Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04890 and MPMX19_04891 are separated by 66 nucleotides MPMX19_04891 and MPMX19_04892 are separated by 209 nucleotides MPMX19_04892 and MPMX19_04893 are separated by 37 nucleotides MPMX19_04893 and MPMX19_04894 are separated by 33 nucleotides
MPMX19_04890: MPMX19_04890 - hypothetical protein, at 340,116 to 340,778
_04890
MPMX19_04891: MPMX19_04891 - hypothetical protein, at 340,845 to 341,318
_04891
MPMX19_04892: MPMX19_04892 - Adenine DNA glycosylase, at 341,528 to 342,586
_04892
MPMX19_04893: MPMX19_04893 - hypothetical protein, at 342,624 to 343,346
_04893
MPMX19_04894: MPMX19_04894 - FAD-dependent catabolic D-arginine dehydrogenase DauA, at 343,380 to 344,519
_04894
Position (kb) 341
342
343 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 340.583 kb on - strand, within MPMX19_04890 at 340.750 kb on + strand at 340.751 kb on - strand at 340.793 kb on + strand at 340.794 kb on - strand at 340.794 kb on - strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.810 kb on + strand at 340.810 kb on + strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.822 kb on + strand at 340.822 kb on + strand at 340.822 kb on + strand at 340.822 kb on + strand at 340.822 kb on + strand at 340.823 kb on - strand at 340.823 kb on - strand at 340.823 kb on - strand at 340.823 kb on - strand at 340.823 kb on - strand at 341.389 kb on + strand at 341.389 kb on + strand at 341.390 kb on - strand at 341.514 kb on + strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.515 kb on - strand at 341.573 kb on + strand at 341.634 kb on - strand, within MPMX19_04892 at 341.693 kb on + strand, within MPMX19_04892 at 341.693 kb on + strand, within MPMX19_04892 at 341.693 kb on + strand, within MPMX19_04892 at 341.693 kb on + strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.694 kb on - strand, within MPMX19_04892 at 341.787 kb on - strand, within MPMX19_04892 at 341.787 kb on - strand, within MPMX19_04892 at 341.789 kb on + strand, within MPMX19_04892 at 341.789 kb on + strand, within MPMX19_04892 at 341.789 kb on + strand, within MPMX19_04892 at 341.789 kb on + strand, within MPMX19_04892 at 341.789 kb on + strand, within MPMX19_04892 at 341.790 kb on - strand, within MPMX19_04892 at 341.790 kb on - strand, within MPMX19_04892 at 341.790 kb on - strand, within MPMX19_04892 at 341.900 kb on + strand, within MPMX19_04892 at 341.900 kb on + strand, within MPMX19_04892 at 341.900 kb on + strand, within MPMX19_04892 at 341.900 kb on + strand, within MPMX19_04892 at 341.900 kb on + strand, within MPMX19_04892 at 341.901 kb on - strand, within MPMX19_04892 at 341.901 kb on - strand, within MPMX19_04892 at 341.901 kb on - strand, within MPMX19_04892 at 341.901 kb on - strand, within MPMX19_04892 at 342.027 kb on + strand, within MPMX19_04892 at 342.027 kb on + strand, within MPMX19_04892 at 342.027 kb on + strand, within MPMX19_04892 at 342.027 kb on + strand, within MPMX19_04892 at 342.027 kb on + strand, within MPMX19_04892 at 342.028 kb on - strand, within MPMX19_04892 at 342.028 kb on - strand, within MPMX19_04892 at 342.028 kb on - strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.074 kb on + strand, within MPMX19_04892 at 342.075 kb on - strand, within MPMX19_04892 at 342.075 kb on - strand, within MPMX19_04892 at 342.075 kb on - strand, within MPMX19_04892 at 342.075 kb on - strand, within MPMX19_04892 at 342.155 kb on + strand, within MPMX19_04892 at 342.155 kb on + strand, within MPMX19_04892 at 342.155 kb on + strand, within MPMX19_04892 at 342.156 kb on - strand, within MPMX19_04892 at 342.156 kb on - strand, within MPMX19_04892 at 342.242 kb on + strand, within MPMX19_04892 at 342.242 kb on + strand, within MPMX19_04892 at 342.243 kb on - strand, within MPMX19_04892 at 342.424 kb on + strand, within MPMX19_04892 at 342.424 kb on + strand, within MPMX19_04892 at 342.424 kb on + strand, within MPMX19_04892 at 342.424 kb on + strand, within MPMX19_04892 at 342.424 kb on + strand, within MPMX19_04892 at 342.424 kb on + strand, within MPMX19_04892 at 342.424 kb on + strand, within MPMX19_04892 at 342.424 kb on + strand, within MPMX19_04892 at 342.424 kb on + strand, within MPMX19_04892 at 342.424 kb on + strand, within MPMX19_04892 at 342.425 kb on - strand, within MPMX19_04892 at 342.425 kb on - strand, within MPMX19_04892 at 342.425 kb on - strand, within MPMX19_04892 at 342.425 kb on - strand, within MPMX19_04892 at 342.425 kb on - strand, within MPMX19_04892 at 342.425 kb on - strand, within MPMX19_04892 at 342.425 kb on - strand, within MPMX19_04892 at 342.599 kb on - strand at 342.609 kb on + strand at 342.609 kb on + strand at 342.609 kb on + strand at 342.609 kb on + strand at 342.609 kb on + strand at 342.609 kb on + strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.610 kb on - strand at 342.873 kb on + strand, within MPMX19_04893 at 342.873 kb on + strand, within MPMX19_04893 at 342.873 kb on + strand, within MPMX19_04893 at 342.873 kb on + strand, within MPMX19_04893 at 342.874 kb on - strand, within MPMX19_04893 at 343.194 kb on + strand, within MPMX19_04893 at 343.194 kb on + strand, within MPMX19_04893 at 343.194 kb on + strand, within MPMX19_04893 at 343.194 kb on + strand, within MPMX19_04893 at 343.194 kb on + strand, within MPMX19_04893 at 343.195 kb on - strand, within MPMX19_04893 at 343.195 kb on - strand, within MPMX19_04893 at 343.195 kb on - strand, within MPMX19_04893 at 343.195 kb on - strand, within MPMX19_04893 at 343.195 kb on - strand, within MPMX19_04893 at 343.195 kb on - strand, within MPMX19_04893 at 343.344 kb on + strand at 343.344 kb on + strand at 343.345 kb on - strand at 343.345 kb on - strand at 343.437 kb on + strand at 343.437 kb on + strand at 343.438 kb on - strand at 343.438 kb on - strand at 343.438 kb on - strand at 343.495 kb on - strand, within MPMX19_04894 at 343.524 kb on + strand, within MPMX19_04894 at 343.524 kb on + strand, within MPMX19_04894 at 343.525 kb on - strand, within MPMX19_04894 at 343.525 kb on - strand, within MPMX19_04894 at 343.525 kb on - strand, within MPMX19_04894 at 343.525 kb on - strand, within MPMX19_04894 at 343.525 kb on - strand, within MPMX19_04894 at 343.525 kb on - strand, within MPMX19_04894 at 343.536 kb on + strand, within MPMX19_04894 at 343.536 kb on + strand, within MPMX19_04894 at 343.536 kb on + strand, within MPMX19_04894 at 343.536 kb on + strand, within MPMX19_04894 at 343.536 kb on + strand, within MPMX19_04894 at 343.537 kb on - strand, within MPMX19_04894 at 343.537 kb on - strand, within MPMX19_04894 at 343.584 kb on + strand, within MPMX19_04894 at 343.584 kb on + strand, within MPMX19_04894 at 343.584 kb on + strand, within MPMX19_04894 at 343.584 kb on + strand, within MPMX19_04894 at 343.584 kb on + strand, within MPMX19_04894 at 343.584 kb on + strand, within MPMX19_04894 at 343.584 kb on + strand, within MPMX19_04894 at 343.584 kb on + strand, within MPMX19_04894 at 343.585 kb on - strand, within MPMX19_04894 at 343.585 kb on - strand, within MPMX19_04894 at 343.585 kb on - strand, within MPMX19_04894 at 343.585 kb on - strand, within MPMX19_04894 at 343.585 kb on - strand, within MPMX19_04894 at 343.585 kb on - strand, within MPMX19_04894 at 343.585 kb on - strand, within MPMX19_04894
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 340,583 - MPMX19_04890 0.70 -0.4 340,750 + -2.3 340,751 - +0.6 340,793 + +0.2 340,794 - -1.4 340,794 - +1.6 340,808 + -1.3 340,808 + -2.1 340,808 + -0.9 340,808 + +0.3 340,808 + +0.3 340,808 + -0.8 340,808 + -0.7 340,808 + +0.7 340,808 + -1.4 340,808 + -1.8 340,808 + -0.0 340,808 + -0.3 340,809 - +0.6 340,809 - -2.4 340,809 - -1.3 340,809 - -0.3 340,809 - +0.7 340,809 - -1.0 340,809 - +0.4 340,809 - +0.2 340,809 - -1.6 340,809 - -1.3 340,809 - -0.8 340,809 - +1.3 340,809 - -1.3 340,809 - -0.3 340,810 + -0.6 340,810 + -0.2 340,811 - +0.4 340,811 - -1.0 340,811 - -0.4 340,811 - -1.3 340,811 - +0.1 340,811 - +0.7 340,811 - +1.1 340,811 - +0.2 340,811 - -0.3 340,811 - +0.2 340,822 + +0.3 340,822 + -1.8 340,822 + -1.0 340,822 + -0.6 340,822 + -0.4 340,823 - -1.3 340,823 - -0.1 340,823 - -2.6 340,823 - -2.4 340,823 - +0.2 341,389 + -1.1 341,389 + +0.5 341,390 - -1.0 341,514 + -0.3 341,515 - -1.5 341,515 - -0.7 341,515 - -0.8 341,515 - -1.6 341,515 - -1.6 341,515 - -1.2 341,515 - -0.8 341,515 - -0.3 341,515 - -0.2 341,515 - -0.6 341,573 + -0.3 341,634 - MPMX19_04892 0.10 -1.6 341,693 + MPMX19_04892 0.16 +0.4 341,693 + MPMX19_04892 0.16 -2.5 341,693 + MPMX19_04892 0.16 -0.6 341,693 + MPMX19_04892 0.16 -1.5 341,694 - MPMX19_04892 0.16 -0.3 341,694 - MPMX19_04892 0.16 -0.6 341,694 - MPMX19_04892 0.16 -0.0 341,694 - MPMX19_04892 0.16 +0.8 341,694 - MPMX19_04892 0.16 -0.1 341,694 - MPMX19_04892 0.16 -0.3 341,694 - MPMX19_04892 0.16 +0.7 341,787 - MPMX19_04892 0.24 -0.0 341,787 - MPMX19_04892 0.24 +0.4 341,789 + MPMX19_04892 0.25 -0.4 341,789 + MPMX19_04892 0.25 -1.3 341,789 + MPMX19_04892 0.25 +0.3 341,789 + MPMX19_04892 0.25 -0.9 341,789 + MPMX19_04892 0.25 +1.0 341,790 - MPMX19_04892 0.25 +1.6 341,790 - MPMX19_04892 0.25 +0.4 341,790 - MPMX19_04892 0.25 -0.4 341,900 + MPMX19_04892 0.35 -1.8 341,900 + MPMX19_04892 0.35 -0.3 341,900 + MPMX19_04892 0.35 -1.3 341,900 + MPMX19_04892 0.35 +0.7 341,900 + MPMX19_04892 0.35 -0.7 341,901 - MPMX19_04892 0.35 +0.7 341,901 - MPMX19_04892 0.35 -1.9 341,901 - MPMX19_04892 0.35 -0.6 341,901 - MPMX19_04892 0.35 -0.0 342,027 + MPMX19_04892 0.47 -3.0 342,027 + MPMX19_04892 0.47 -1.5 342,027 + MPMX19_04892 0.47 -1.0 342,027 + MPMX19_04892 0.47 -1.3 342,027 + MPMX19_04892 0.47 +0.0 342,028 - MPMX19_04892 0.47 +0.0 342,028 - MPMX19_04892 0.47 -0.3 342,028 - MPMX19_04892 0.47 -1.9 342,074 + MPMX19_04892 0.52 +0.2 342,074 + MPMX19_04892 0.52 -2.1 342,074 + MPMX19_04892 0.52 -0.8 342,074 + MPMX19_04892 0.52 -0.9 342,074 + MPMX19_04892 0.52 +2.1 342,074 + MPMX19_04892 0.52 -0.9 342,074 + MPMX19_04892 0.52 +1.4 342,074 + MPMX19_04892 0.52 -0.2 342,075 - MPMX19_04892 0.52 +1.3 342,075 - MPMX19_04892 0.52 -0.8 342,075 - MPMX19_04892 0.52 -1.4 342,075 - MPMX19_04892 0.52 +1.0 342,155 + MPMX19_04892 0.59 +1.5 342,155 + MPMX19_04892 0.59 -0.9 342,155 + MPMX19_04892 0.59 -0.3 342,156 - MPMX19_04892 0.59 +0.3 342,156 - MPMX19_04892 0.59 -1.1 342,242 + MPMX19_04892 0.67 -0.0 342,242 + MPMX19_04892 0.67 -1.3 342,243 - MPMX19_04892 0.68 -2.3 342,424 + MPMX19_04892 0.85 -1.1 342,424 + MPMX19_04892 0.85 -0.9 342,424 + MPMX19_04892 0.85 -1.5 342,424 + MPMX19_04892 0.85 -0.4 342,424 + MPMX19_04892 0.85 -1.0 342,424 + MPMX19_04892 0.85 -2.3 342,424 + MPMX19_04892 0.85 -1.0 342,424 + MPMX19_04892 0.85 -1.3 342,424 + MPMX19_04892 0.85 -0.9 342,424 + MPMX19_04892 0.85 -1.5 342,425 - MPMX19_04892 0.85 +0.7 342,425 - MPMX19_04892 0.85 -0.8 342,425 - MPMX19_04892 0.85 -1.6 342,425 - MPMX19_04892 0.85 -0.9 342,425 - MPMX19_04892 0.85 +0.8 342,425 - MPMX19_04892 0.85 -1.4 342,425 - MPMX19_04892 0.85 -0.1 342,599 - -1.8 342,609 + +1.2 342,609 + -0.4 342,609 + -0.1 342,609 + -0.7 342,609 + -0.5 342,609 + -0.8 342,610 - -0.8 342,610 - -0.8 342,610 - +0.1 342,610 - -0.6 342,610 - +0.5 342,610 - -1.0 342,610 - -0.8 342,610 - -0.0 342,610 - -0.1 342,610 - -0.6 342,610 - +1.1 342,610 - +0.3 342,610 - -0.0 342,610 - -0.4 342,610 - +1.3 342,610 - -1.9 342,610 - -0.9 342,610 - -0.3 342,610 - -0.3 342,610 - +0.3 342,873 + MPMX19_04893 0.34 -1.0 342,873 + MPMX19_04893 0.34 -2.9 342,873 + MPMX19_04893 0.34 -0.8 342,873 + MPMX19_04893 0.34 -0.9 342,874 - MPMX19_04893 0.35 -0.4 343,194 + MPMX19_04893 0.79 -0.9 343,194 + MPMX19_04893 0.79 +0.7 343,194 + MPMX19_04893 0.79 -2.6 343,194 + MPMX19_04893 0.79 +0.2 343,194 + MPMX19_04893 0.79 -0.6 343,195 - MPMX19_04893 0.79 -0.8 343,195 - MPMX19_04893 0.79 -0.3 343,195 - MPMX19_04893 0.79 -1.9 343,195 - MPMX19_04893 0.79 -0.5 343,195 - MPMX19_04893 0.79 -0.4 343,195 - MPMX19_04893 0.79 +0.1 343,344 + -0.0 343,344 + -0.7 343,345 - +0.2 343,345 - +0.6 343,437 + +0.6 343,437 + -2.0 343,438 - +0.3 343,438 - -0.4 343,438 - +0.8 343,495 - MPMX19_04894 0.10 +0.3 343,524 + MPMX19_04894 0.13 -0.7 343,524 + MPMX19_04894 0.13 -0.4 343,525 - MPMX19_04894 0.13 +0.6 343,525 - MPMX19_04894 0.13 +1.2 343,525 - MPMX19_04894 0.13 +0.7 343,525 - MPMX19_04894 0.13 +0.4 343,525 - MPMX19_04894 0.13 -0.3 343,525 - MPMX19_04894 0.13 +0.3 343,536 + MPMX19_04894 0.14 +0.7 343,536 + MPMX19_04894 0.14 +0.6 343,536 + MPMX19_04894 0.14 -2.4 343,536 + MPMX19_04894 0.14 +0.6 343,536 + MPMX19_04894 0.14 +0.4 343,537 - MPMX19_04894 0.14 +0.7 343,537 - MPMX19_04894 0.14 -0.0 343,584 + MPMX19_04894 0.18 +0.2 343,584 + MPMX19_04894 0.18 -0.2 343,584 + MPMX19_04894 0.18 -0.4 343,584 + MPMX19_04894 0.18 -0.4 343,584 + MPMX19_04894 0.18 -2.0 343,584 + MPMX19_04894 0.18 -0.3 343,584 + MPMX19_04894 0.18 -1.1 343,584 + MPMX19_04894 0.18 -1.3 343,585 - MPMX19_04894 0.18 -2.3 343,585 - MPMX19_04894 0.18 +0.6 343,585 - MPMX19_04894 0.18 -1.4 343,585 - MPMX19_04894 0.18 +0.3 343,585 - MPMX19_04894 0.18 +1.3 343,585 - MPMX19_04894 0.18 -1.3 343,585 - MPMX19_04894 0.18 +0.4
Or see this region's nucleotide sequence