Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04840 and MPMX19_04841 are separated by 268 nucleotides MPMX19_04841 and MPMX19_04842 are separated by 202 nucleotides MPMX19_04842 and MPMX19_04843 are separated by 207 nucleotides
MPMX19_04840: MPMX19_04840 - Leu/Ile/Val-binding protein, at 248,174 to 249,283
_04840
MPMX19_04841: MPMX19_04841 - Aconitate hydratase B, at 249,552 to 252,143
_04841
MPMX19_04842: MPMX19_04842 - Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase, at 252,346 to 252,873
_04842
MPMX19_04843: MPMX19_04843 - hypothetical protein, at 253,081 to 253,455
_04843
Position (kb) 249
250
251
252
253 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 248.622 kb on + strand, within MPMX19_04840 at 248.622 kb on + strand, within MPMX19_04840 at 248.623 kb on - strand, within MPMX19_04840 at 248.623 kb on - strand, within MPMX19_04840 at 248.623 kb on - strand, within MPMX19_04840 at 248.625 kb on + strand, within MPMX19_04840 at 248.625 kb on + strand, within MPMX19_04840 at 248.625 kb on + strand, within MPMX19_04840 at 248.625 kb on + strand, within MPMX19_04840 at 248.626 kb on - strand, within MPMX19_04840 at 248.626 kb on - strand, within MPMX19_04840 at 248.626 kb on - strand, within MPMX19_04840 at 248.707 kb on - strand, within MPMX19_04840 at 248.769 kb on + strand, within MPMX19_04840 at 248.769 kb on + strand, within MPMX19_04840 at 248.770 kb on - strand, within MPMX19_04840 at 248.770 kb on - strand, within MPMX19_04840 at 248.826 kb on + strand, within MPMX19_04840 at 248.826 kb on + strand, within MPMX19_04840 at 248.826 kb on + strand, within MPMX19_04840 at 248.826 kb on + strand, within MPMX19_04840 at 248.826 kb on + strand, within MPMX19_04840 at 248.826 kb on + strand, within MPMX19_04840 at 248.826 kb on + strand, within MPMX19_04840 at 248.826 kb on + strand, within MPMX19_04840 at 248.826 kb on + strand, within MPMX19_04840 at 248.826 kb on + strand, within MPMX19_04840 at 248.826 kb on + strand, within MPMX19_04840 at 248.827 kb on - strand, within MPMX19_04840 at 248.827 kb on - strand, within MPMX19_04840 at 248.827 kb on - strand, within MPMX19_04840 at 248.827 kb on - strand, within MPMX19_04840 at 248.827 kb on - strand, within MPMX19_04840 at 248.827 kb on - strand, within MPMX19_04840 at 248.827 kb on - strand, within MPMX19_04840 at 248.827 kb on - strand, within MPMX19_04840 at 248.827 kb on - strand, within MPMX19_04840 at 248.952 kb on + strand, within MPMX19_04840 at 248.952 kb on + strand, within MPMX19_04840 at 248.953 kb on - strand, within MPMX19_04840 at 248.953 kb on - strand, within MPMX19_04840 at 249.147 kb on + strand, within MPMX19_04840 at 249.147 kb on + strand, within MPMX19_04840 at 249.148 kb on - strand, within MPMX19_04840 at 249.148 kb on - strand, within MPMX19_04840 at 249.148 kb on - strand, within MPMX19_04840 at 249.148 kb on - strand, within MPMX19_04840 at 249.148 kb on - strand, within MPMX19_04840 at 249.148 kb on - strand, within MPMX19_04840 at 249.204 kb on - strand at 249.204 kb on - strand at 249.204 kb on - strand at 249.204 kb on - strand at 249.323 kb on - strand at 249.530 kb on + strand at 249.550 kb on + strand at 249.550 kb on + strand at 252.159 kb on - strand at 252.222 kb on - strand at 252.224 kb on - strand at 252.224 kb on - strand at 252.233 kb on - strand at 252.263 kb on - strand at 252.263 kb on - strand at 252.263 kb on - strand at 252.263 kb on - strand at 252.307 kb on - strand at 252.309 kb on + strand at 252.322 kb on + strand at 252.322 kb on + strand at 252.347 kb on + strand at 252.348 kb on - strand at 252.785 kb on + strand, within MPMX19_04842 at 252.785 kb on + strand, within MPMX19_04842 at 252.785 kb on + strand, within MPMX19_04842 at 252.785 kb on + strand, within MPMX19_04842 at 252.786 kb on - strand, within MPMX19_04842 at 252.786 kb on - strand, within MPMX19_04842 at 252.786 kb on - strand, within MPMX19_04842 at 252.902 kb on + strand at 253.041 kb on + strand at 253.041 kb on + strand at 253.041 kb on + strand at 253.041 kb on + strand at 253.041 kb on + strand at 253.041 kb on + strand at 253.041 kb on + strand at 253.041 kb on + strand at 253.042 kb on - strand at 253.042 kb on - strand at 253.042 kb on - strand at 253.042 kb on - strand at 253.042 kb on - strand at 253.042 kb on - strand at 253.042 kb on - strand at 253.050 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 248,622 + MPMX19_04840 0.40 +1.0 248,622 + MPMX19_04840 0.40 +0.1 248,623 - MPMX19_04840 0.40 +0.2 248,623 - MPMX19_04840 0.40 -0.0 248,623 - MPMX19_04840 0.40 +0.7 248,625 + MPMX19_04840 0.41 +0.3 248,625 + MPMX19_04840 0.41 -0.0 248,625 + MPMX19_04840 0.41 -0.6 248,625 + MPMX19_04840 0.41 -0.2 248,626 - MPMX19_04840 0.41 -1.0 248,626 - MPMX19_04840 0.41 -0.9 248,626 - MPMX19_04840 0.41 -0.1 248,707 - MPMX19_04840 0.48 -0.0 248,769 + MPMX19_04840 0.54 -0.5 248,769 + MPMX19_04840 0.54 +0.6 248,770 - MPMX19_04840 0.54 +0.2 248,770 - MPMX19_04840 0.54 +0.6 248,826 + MPMX19_04840 0.59 +0.6 248,826 + MPMX19_04840 0.59 -0.8 248,826 + MPMX19_04840 0.59 -1.8 248,826 + MPMX19_04840 0.59 +0.8 248,826 + MPMX19_04840 0.59 -2.2 248,826 + MPMX19_04840 0.59 +1.3 248,826 + MPMX19_04840 0.59 -0.2 248,826 + MPMX19_04840 0.59 +0.6 248,826 + MPMX19_04840 0.59 -0.1 248,826 + MPMX19_04840 0.59 -0.0 248,826 + MPMX19_04840 0.59 +1.0 248,827 - MPMX19_04840 0.59 -1.1 248,827 - MPMX19_04840 0.59 -0.7 248,827 - MPMX19_04840 0.59 -1.5 248,827 - MPMX19_04840 0.59 -1.0 248,827 - MPMX19_04840 0.59 -0.3 248,827 - MPMX19_04840 0.59 +1.0 248,827 - MPMX19_04840 0.59 -0.9 248,827 - MPMX19_04840 0.59 -0.4 248,827 - MPMX19_04840 0.59 -0.6 248,952 + MPMX19_04840 0.70 -0.1 248,952 + MPMX19_04840 0.70 -1.2 248,953 - MPMX19_04840 0.70 -0.3 248,953 - MPMX19_04840 0.70 -1.1 249,147 + MPMX19_04840 0.88 -1.2 249,147 + MPMX19_04840 0.88 -0.3 249,148 - MPMX19_04840 0.88 +0.8 249,148 - MPMX19_04840 0.88 +0.2 249,148 - MPMX19_04840 0.88 -0.6 249,148 - MPMX19_04840 0.88 +1.0 249,148 - MPMX19_04840 0.88 -1.1 249,148 - MPMX19_04840 0.88 -1.8 249,204 - -0.5 249,204 - +0.1 249,204 - +0.5 249,204 - +1.1 249,323 - -0.5 249,530 + -1.4 249,550 + -1.2 249,550 + -1.9 252,159 - -0.3 252,222 - -2.3 252,224 - -1.0 252,224 - -1.3 252,233 - +0.6 252,263 - -0.8 252,263 - -0.3 252,263 - +0.1 252,263 - -0.9 252,307 - -1.8 252,309 + -1.4 252,322 + +0.7 252,322 + -1.3 252,347 + -0.2 252,348 - -0.8 252,785 + MPMX19_04842 0.83 -1.3 252,785 + MPMX19_04842 0.83 -0.1 252,785 + MPMX19_04842 0.83 -0.6 252,785 + MPMX19_04842 0.83 -1.1 252,786 - MPMX19_04842 0.83 -0.4 252,786 - MPMX19_04842 0.83 -1.6 252,786 - MPMX19_04842 0.83 -0.4 252,902 + +0.4 253,041 + -0.0 253,041 + +0.9 253,041 + -0.2 253,041 + -1.9 253,041 + +0.8 253,041 + -3.1 253,041 + -1.0 253,041 + -1.5 253,042 - -1.2 253,042 - -0.2 253,042 - -1.0 253,042 - -1.3 253,042 - -0.0 253,042 - +1.6 253,042 - -1.3 253,050 + -0.1
Or see this region's nucleotide sequence