Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04699 and MPMX19_04700 are separated by 235 nucleotides MPMX19_04700 and MPMX19_04701 overlap by 4 nucleotides MPMX19_04701 and MPMX19_04702 are separated by 10 nucleotides
MPMX19_04699: MPMX19_04699 - hypothetical protein, at 84,746 to 85,615
_04699
MPMX19_04700: MPMX19_04700 - Adaptive-response sensory-kinase SasA, at 85,851 to 87,530
_04700
MPMX19_04701: MPMX19_04701 - Transcriptional regulatory protein FixJ, at 87,527 to 88,171
_04701
MPMX19_04702: MPMX19_04702 - hypothetical protein, at 88,182 to 88,931
_04702
Position (kb) 85
86
87
88 Strain fitness (log2 ratio) -2
-1
0
1
2 at 84.919 kb on - strand, within MPMX19_04699 at 84.919 kb on - strand, within MPMX19_04699 at 84.919 kb on - strand, within MPMX19_04699 at 84.919 kb on - strand, within MPMX19_04699 at 85.192 kb on - strand, within MPMX19_04699 at 85.192 kb on - strand, within MPMX19_04699 at 85.341 kb on + strand, within MPMX19_04699 at 85.473 kb on + strand, within MPMX19_04699 at 85.474 kb on - strand, within MPMX19_04699 at 85.745 kb on + strand at 85.746 kb on - strand at 85.746 kb on - strand at 85.788 kb on - strand at 85.791 kb on - strand at 85.794 kb on - strand at 85.839 kb on + strand at 85.840 kb on - strand at 85.893 kb on + strand at 85.894 kb on - strand at 85.894 kb on - strand at 86.080 kb on + strand, within MPMX19_04700 at 86.080 kb on + strand, within MPMX19_04700 at 86.081 kb on - strand, within MPMX19_04700 at 86.325 kb on + strand, within MPMX19_04700 at 86.325 kb on + strand, within MPMX19_04700 at 86.326 kb on - strand, within MPMX19_04700 at 86.547 kb on + strand, within MPMX19_04700 at 86.547 kb on + strand, within MPMX19_04700 at 86.548 kb on - strand, within MPMX19_04700 at 86.726 kb on + strand, within MPMX19_04700 at 86.726 kb on + strand, within MPMX19_04700 at 86.726 kb on + strand, within MPMX19_04700 at 86.726 kb on + strand, within MPMX19_04700 at 86.727 kb on - strand, within MPMX19_04700 at 86.727 kb on - strand, within MPMX19_04700 at 86.841 kb on + strand, within MPMX19_04700 at 87.645 kb on + strand, within MPMX19_04701 at 87.646 kb on - strand, within MPMX19_04701 at 88.397 kb on + strand, within MPMX19_04702 at 88.398 kb on - strand, within MPMX19_04702 at 88.398 kb on - strand, within MPMX19_04702
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 84,919 - MPMX19_04699 0.20 +1.1 84,919 - MPMX19_04699 0.20 -0.4 84,919 - MPMX19_04699 0.20 -0.3 84,919 - MPMX19_04699 0.20 -2.0 85,192 - MPMX19_04699 0.51 -1.3 85,192 - MPMX19_04699 0.51 +1.0 85,341 + MPMX19_04699 0.68 -1.3 85,473 + MPMX19_04699 0.84 -2.4 85,474 - MPMX19_04699 0.84 -0.4 85,745 + +1.3 85,746 - +1.5 85,746 - -0.2 85,788 - -0.1 85,791 - -0.3 85,794 - -0.8 85,839 + -1.1 85,840 - -2.1 85,893 + -1.6 85,894 - -0.6 85,894 - -1.0 86,080 + MPMX19_04700 0.14 -0.7 86,080 + MPMX19_04700 0.14 +0.5 86,081 - MPMX19_04700 0.14 -1.1 86,325 + MPMX19_04700 0.28 -0.5 86,325 + MPMX19_04700 0.28 +0.2 86,326 - MPMX19_04700 0.28 -0.7 86,547 + MPMX19_04700 0.41 +0.4 86,547 + MPMX19_04700 0.41 -1.3 86,548 - MPMX19_04700 0.41 -0.1 86,726 + MPMX19_04700 0.52 +1.0 86,726 + MPMX19_04700 0.52 -0.5 86,726 + MPMX19_04700 0.52 +0.0 86,726 + MPMX19_04700 0.52 +2.2 86,727 - MPMX19_04700 0.52 -0.5 86,727 - MPMX19_04700 0.52 +0.7 86,841 + MPMX19_04700 0.59 +1.1 87,645 + MPMX19_04701 0.18 -0.8 87,646 - MPMX19_04701 0.18 -1.1 88,397 + MPMX19_04702 0.29 -0.4 88,398 - MPMX19_04702 0.29 -1.0 88,398 - MPMX19_04702 0.29 +0.0
Or see this region's nucleotide sequence