Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03861

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
106,670	+		MPMX19_03860	0.11	-0.5
106,670	+		MPMX19_03860	0.11	-2.3
106,671	-		MPMX19_03860	0.12	-0.3
106,671	-		MPMX19_03860	0.12	+0.3
106,671	-		MPMX19_03860	0.12	-0.0
106,671	-		MPMX19_03860	0.12	-0.5
106,693	+		MPMX19_03860	0.15	-0.6
106,693	+		MPMX19_03860	0.15	+0.2
106,693	+		MPMX19_03860	0.15	-0.4
106,693	+		MPMX19_03860	0.15	-1.8
106,730	+		MPMX19_03860	0.21	-1.2
106,736	+		MPMX19_03860	0.22	-0.8
106,736	+		MPMX19_03860	0.22	-0.5
106,736	+		MPMX19_03860	0.22	-0.4
106,737	-		MPMX19_03860	0.22	-0.2
106,737	-		MPMX19_03860	0.22	-0.4
106,737	-		MPMX19_03860	0.22	+0.1
106,769	+		MPMX19_03860	0.27	+0.3
106,769	+		MPMX19_03860	0.27	-1.8
106,769	+		MPMX19_03860	0.27	-0.2
106,769	+		MPMX19_03860	0.27	-0.5
106,769	+		MPMX19_03860	0.27	+0.2
106,769	+		MPMX19_03860	0.27	-1.7
106,769	+		MPMX19_03860	0.27	+0.8
106,769	+		MPMX19_03860	0.27	-0.6
106,769	+		MPMX19_03860	0.27	-2.4
106,769	+		MPMX19_03860	0.27	-1.9
106,769	+		MPMX19_03860	0.27	-1.1
106,770	-		MPMX19_03860	0.27	-0.4
106,770	-		MPMX19_03860	0.27	+0.8
106,770	-		MPMX19_03860	0.27	-0.1
106,770	-		MPMX19_03860	0.27	-0.9
106,770	-		MPMX19_03860	0.27	-1.0
106,770	-		MPMX19_03860	0.27	-1.2
106,770	-		MPMX19_03860	0.27	-0.1
106,770	-		MPMX19_03860	0.27	-1.4
106,770	-		MPMX19_03860	0.27	-0.2
106,770	-		MPMX19_03860	0.27	-1.5
106,770	-		MPMX19_03860	0.27	-0.1
106,770	-		MPMX19_03860	0.27	+2.0
106,770	-		MPMX19_03860	0.27	-0.2
106,770	-		MPMX19_03860	0.27	-0.4
106,770	-		MPMX19_03860	0.27	-1.6
106,770	-		MPMX19_03860	0.27	-0.7
106,770	-		MPMX19_03860	0.27	-0.4
106,770	-		MPMX19_03860	0.27	-0.4
106,770	-		MPMX19_03860	0.27	-1.0
106,770	-		MPMX19_03860	0.27	-0.9
106,770	-		MPMX19_03860	0.27	+0.2
106,770	-		MPMX19_03860	0.27	+1.9
106,845	+		MPMX19_03860	0.39	-1.6
106,845	+		MPMX19_03860	0.39	-0.7
106,845	+		MPMX19_03860	0.39	-0.1
106,845	+		MPMX19_03860	0.39	+0.6
106,868	+		MPMX19_03860	0.43	-1.9
106,869	-		MPMX19_03860	0.43	+0.5
106,881	+		MPMX19_03860	0.45	-0.6
106,881	+		MPMX19_03860	0.45	+0.1
106,881	+		MPMX19_03860	0.45	-1.3
106,881	+		MPMX19_03860	0.45	+0.6
106,881	+		MPMX19_03860	0.45	-1.4
106,881	+		MPMX19_03860	0.45	-0.1
106,881	+		MPMX19_03860	0.45	-1.5
106,882	-		MPMX19_03860	0.45	-1.4
106,882	-		MPMX19_03860	0.45	-1.2
106,882	-		MPMX19_03860	0.45	+1.1
106,882	-		MPMX19_03860	0.45	+0.6
106,882	-		MPMX19_03860	0.45	+0.4
106,882	-		MPMX19_03860	0.45	+0.3
106,882	-		MPMX19_03860	0.45	-2.2
106,882	-		MPMX19_03860	0.45	-0.8
106,883	-		MPMX19_03860	0.45	-1.5
106,962	-		MPMX19_03860	0.58	-0.7
107,004	+		MPMX19_03860	0.64	+0.1
107,004	+		MPMX19_03860	0.64	-2.2
107,004	+		MPMX19_03860	0.64	+0.1
107,004	+		MPMX19_03860	0.64	-0.5
107,004	+		MPMX19_03860	0.64	-0.5
107,005	-		MPMX19_03860	0.64	-1.3
107,034	+		MPMX19_03860	0.69	-1.1
107,034	+		MPMX19_03860	0.69	-1.1
107,035	-		MPMX19_03860	0.69	+0.5
107,127	+		MPMX19_03860	0.84	+0.5
107,127	+		MPMX19_03860	0.84	-1.8
107,127	+		MPMX19_03860	0.84	+0.6
107,127	+		MPMX19_03860	0.84	+1.0
107,127	+		MPMX19_03860	0.84	-0.9
107,127	+		MPMX19_03860	0.84	-0.7
107,127	+		MPMX19_03860	0.84	-1.2
107,127	+		MPMX19_03860	0.84	-0.2
107,127	+		MPMX19_03860	0.84	+0.9
107,127	+		MPMX19_03860	0.84	+1.2
107,128	-		MPMX19_03860	0.84	-0.0
107,128	-		MPMX19_03860	0.84	+0.2
107,128	-		MPMX19_03860	0.84	-0.8
107,128	-		MPMX19_03860	0.84	+0.6
107,128	-		MPMX19_03860	0.84	-0.4
107,128	-		MPMX19_03860	0.84	-0.1
107,128	-		MPMX19_03860	0.84	-0.7
107,128	-		MPMX19_03860	0.84	-0.4
107,128	-		MPMX19_03860	0.84	-1.7
107,129	+		MPMX19_03860	0.84	-0.6
107,129	+		MPMX19_03860	0.84	+0.4
107,129	+		MPMX19_03860	0.84	-1.0
107,129	+		MPMX19_03860	0.84	-1.7
107,130	-		MPMX19_03860	0.84	-0.1
107,130	-		MPMX19_03860	0.84	-0.8
107,130	-		MPMX19_03860	0.84	-1.4
107,207	+				-1.1
107,208	-				-1.2
107,326	+				+0.5
107,327	-				-0.6
107,327	-				+0.8
107,327	-				+0.2
107,327	-				-0.4
107,327	-				-0.2
107,561	+				+0.4
107,562	-				-1.5
107,562	-				-1.9
107,562	-				+0.4
107,562	-				+1.5
107,562	-				-0.2
107,574	+				+0.6
107,574	+				-0.6
107,574	+				+1.2
107,574	+				-0.2
107,575	-				+1.2
107,575	-				+0.6
107,575	-				-0.1
107,575	-				-1.3
107,700	+				-0.4
107,700	+				-1.8
107,700	+				+0.1
107,700	+				+0.3
107,700	+				+2.2
107,701	-				+0.8
107,701	-				+0.8
107,701	-				-1.4
107,701	-				+0.6
107,703	+				-0.5
107,703	+				-0.2
107,703	+				-1.1
107,703	+				-1.6
107,703	+				+0.2
107,703	+				+0.6
107,703	+				+1.0
107,703	+				-0.7
107,703	+				-0.2
107,704	-				-0.4
107,704	-				-0.2
107,704	-				-1.2
107,704	-				+0.5
107,704	-				+1.6
107,704	-				-0.2
107,704	-				+0.1
107,704	-				+0.5
107,704	-				+0.2
107,704	-				+0.6
107,704	-				+0.9
107,704	-				-1.2
107,704	-				-1.7
107,705	-				-0.9
107,712	+				-2.4
107,772	+		MPMX19_03861	0.16	+1.3
107,772	+		MPMX19_03861	0.16	-1.5
107,772	+		MPMX19_03861	0.16	+0.2
107,772	+		MPMX19_03861	0.16	-1.2
107,772	+		MPMX19_03861	0.16	-2.7
107,772	+		MPMX19_03861	0.16	-1.4
107,772	+		MPMX19_03861	0.16	-0.7
107,772	+		MPMX19_03861	0.16	-1.9
107,772	+		MPMX19_03861	0.16	-0.4
107,772	+		MPMX19_03861	0.16	-1.9
107,772	+		MPMX19_03861	0.16	-0.6
107,772	+		MPMX19_03861	0.16	+0.1
107,773	-		MPMX19_03861	0.16	-1.2
107,773	-		MPMX19_03861	0.16	-0.2
107,773	-		MPMX19_03861	0.16	-0.7
107,773	-		MPMX19_03861	0.16	-1.1
107,773	-		MPMX19_03861	0.16	-0.7
107,773	-		MPMX19_03861	0.16	-2.1
107,773	-		MPMX19_03861	0.16	+0.4
107,773	-		MPMX19_03861	0.16	-1.3
107,773	-		MPMX19_03861	0.16	-0.7
107,773	-		MPMX19_03861	0.16	-1.4
107,773	-		MPMX19_03861	0.16	+0.6
107,799	+		MPMX19_03861	0.19	-0.4
107,799	+		MPMX19_03861	0.19	+0.9
107,799	+		MPMX19_03861	0.19	-1.4
107,799	+		MPMX19_03861	0.19	-1.3
107,799	+		MPMX19_03861	0.19	+0.1
107,799	+		MPMX19_03861	0.19	+1.1
107,799	+		MPMX19_03861	0.19	-0.7
107,799	+		MPMX19_03861	0.19	-0.5
107,799	+		MPMX19_03861	0.19	-2.7
107,800	-		MPMX19_03861	0.19	-0.4
107,800	-		MPMX19_03861	0.19	-1.5
107,800	-		MPMX19_03861	0.19	-0.2
107,800	-		MPMX19_03861	0.19	-0.2
107,800	-		MPMX19_03861	0.19	+1.2
107,800	-		MPMX19_03861	0.19	-1.7
107,800	-		MPMX19_03861	0.19	+0.1
107,800	-		MPMX19_03861	0.19	-0.9
107,800	-		MPMX19_03861	0.19	+0.8
107,800	-		MPMX19_03861	0.19	+0.3
107,800	-		MPMX19_03861	0.19	-1.7
107,800	-		MPMX19_03861	0.19	+1.2
107,916	+		MPMX19_03861	0.32	+0.6
107,916	+		MPMX19_03861	0.32	+1.0
107,916	+		MPMX19_03861	0.32	+0.4
107,917	-		MPMX19_03861	0.32	+0.1
108,006	+		MPMX19_03861	0.42	-0.2
108,006	+		MPMX19_03861	0.42	-0.2
108,006	+		MPMX19_03861	0.42	-0.9
108,006	+		MPMX19_03861	0.42	+0.3
108,007	-		MPMX19_03861	0.42	+2.4
108,052	+		MPMX19_03861	0.47	+0.1
108,052	+		MPMX19_03861	0.47	-1.3
108,136	-		MPMX19_03861	0.56	-1.1
108,136	-		MPMX19_03861	0.56	-1.7
108,168	+		MPMX19_03861	0.60	-1.0
108,169	-		MPMX19_03861	0.60	-0.9
108,219	+		MPMX19_03861	0.66	-0.7
108,219	+		MPMX19_03861	0.66	-1.2
108,219	+		MPMX19_03861	0.66	+0.5
108,219	+		MPMX19_03861	0.66	-0.4
108,219	+		MPMX19_03861	0.66	-0.2
108,219	+		MPMX19_03861	0.66	-0.5
108,219	+		MPMX19_03861	0.66	+0.4
108,219	+		MPMX19_03861	0.66	-1.6
108,220	-		MPMX19_03861	0.66	-0.9
108,220	-		MPMX19_03861	0.66	-0.9
108,220	-		MPMX19_03861	0.66	+1.6
108,220	-		MPMX19_03861	0.66	+0.2
108,220	-		MPMX19_03861	0.66	+0.2
108,292	+		MPMX19_03861	0.74	-0.4
108,293	+		MPMX19_03861	0.74	-1.5
108,293	+		MPMX19_03861	0.74	-0.2
108,293	+		MPMX19_03861	0.74	-1.7
108,293	+		MPMX19_03861	0.74	-1.2
108,293	+		MPMX19_03861	0.74	-0.2
108,293	+		MPMX19_03861	0.74	-2.4
108,294	-		MPMX19_03861	0.74	+2.1
108,294	-		MPMX19_03861	0.74	-1.0
108,294	-		MPMX19_03861	0.74	-0.9
108,294	-		MPMX19_03861	0.74	-0.1
108,294	-		MPMX19_03861	0.74	-0.4
108,294	-		MPMX19_03861	0.74	-0.5
108,545	-				+1.5
108,567	+				-0.3
108,567	+				+0.1
108,590	+				+0.6
108,590	+				+0.0
108,590	+				+0.4
108,590	+				-1.9
108,590	+				+0.3
108,590	+				-0.4
108,590	+				-0.1
108,590	+				-0.6
108,590	+				-0.2
108,590	+				-0.7
108,591	-				+0.5
108,591	-				-0.8
108,591	-				+0.9
108,591	-				-0.6
108,591	-				-0.7
108,591	-				+0.6
108,591	-				+0.6
108,591	-				-0.7
108,591	-				-0.4
108,592	+				+0.6
108,592	+				+2.0
108,593	-				-1.2
108,638	-				-2.4
108,790	+				+0.7
108,790	+				-0.4
108,790	+				+2.1
108,790	+				-1.2
108,790	+				-1.8
108,790	+				-0.1
108,790	+				-1.0
108,790	+				-0.5
108,791	-				+0.5
108,791	-				-1.8
108,791	-				-0.5
108,791	-				+1.6
108,791	-				-0.7
108,791	-				+0.6
108,791	-				+1.4
108,791	-				-0.1
108,791	-				-1.6
108,791	-				+0.1
108,791	-				-0.2
108,791	-				-1.4
108,791	-				+1.3
108,995	+				+2.1
108,995	+				+0.9
108,995	+				-1.4
108,996	-				-2.4
109,008	-				-0.2
109,124	+		MPMX19_03862	0.35	+1.2
109,125	-		MPMX19_03862	0.36	+0.8
109,142	+		MPMX19_03862	0.41	-1.9
109,142	+		MPMX19_03862	0.41	-0.9
109,142	+		MPMX19_03862	0.41	-1.8
109,143	-		MPMX19_03862	0.41	+1.1
109,143	-		MPMX19_03862	0.41	+1.6
109,148	+		MPMX19_03862	0.42	+1.2
109,148	+		MPMX19_03862	0.42	-0.2
109,148	+		MPMX19_03862	0.42	-0.7
109,149	-		MPMX19_03862	0.43	-1.8
109,149	-		MPMX19_03862	0.43	-1.2
109,149	-		MPMX19_03862	0.43	+0.1
109,149	-		MPMX19_03862	0.43	+0.6
109,149	-		MPMX19_03862	0.43	+0.3
109,149	-		MPMX19_03862	0.43	-1.5
109,149	-		MPMX19_03862	0.43	+1.4
109,149	-		MPMX19_03862	0.43	+0.3
109,149	-		MPMX19_03862	0.43	-1.5
109,346	+				-0.3
109,346	+				-0.2
109,346	+				+1.4
109,346	+				-0.4
109,346	+				-0.3
109,346	+				-0.4
109,346	+				-0.1
109,346	+				+0.1
109,346	+				-0.8
109,347	-				-1.7
109,347	-				-0.8
109,347	-				+0.6
109,465	+				+0.1
109,465	+				-1.8
109,465	+				-0.5
109,465	+				-1.9
109,465	+				-1.0
109,466	-				+1.1
109,466	-				-1.2
109,466	-				-0.4
109,466	-				+1.2