Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03424 and MPMX19_03425 are separated by 16 nucleotides MPMX19_03425 and MPMX19_03426 are separated by 12 nucleotides MPMX19_03426 and MPMX19_03427 are separated by 159 nucleotides MPMX19_03427 and MPMX19_03428 are separated by 3 nucleotides
MPMX19_03424: MPMX19_03424 - hypothetical protein, at 815,986 to 816,651
_03424
MPMX19_03425: MPMX19_03425 - hypothetical protein, at 816,668 to 816,979
_03425
MPMX19_03426: MPMX19_03426 - Trans-aconitate 2-methyltransferase, at 816,992 to 818,419
_03426
MPMX19_03427: MPMX19_03427 - hypothetical protein, at 818,579 to 819,355
_03427
MPMX19_03428: MPMX19_03428 - hypothetical protein, at 819,359 to 821,287
_03428
Position (kb) 816
817
818
819 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 816.077 kb on + strand, within MPMX19_03424 at 816.077 kb on + strand, within MPMX19_03424 at 816.077 kb on + strand, within MPMX19_03424 at 816.077 kb on + strand, within MPMX19_03424 at 816.077 kb on + strand, within MPMX19_03424 at 816.077 kb on + strand, within MPMX19_03424 at 816.077 kb on + strand, within MPMX19_03424 at 816.077 kb on + strand, within MPMX19_03424 at 816.077 kb on + strand, within MPMX19_03424 at 816.077 kb on + strand, within MPMX19_03424 at 816.077 kb on + strand, within MPMX19_03424 at 816.077 kb on + strand, within MPMX19_03424 at 816.077 kb on + strand, within MPMX19_03424 at 816.077 kb on + strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.078 kb on - strand, within MPMX19_03424 at 816.155 kb on + strand, within MPMX19_03424 at 816.155 kb on + strand, within MPMX19_03424 at 816.155 kb on + strand, within MPMX19_03424 at 816.155 kb on + strand, within MPMX19_03424 at 816.155 kb on + strand, within MPMX19_03424 at 816.155 kb on + strand, within MPMX19_03424 at 816.155 kb on + strand, within MPMX19_03424 at 816.155 kb on + strand, within MPMX19_03424 at 816.155 kb on + strand, within MPMX19_03424 at 816.155 kb on + strand, within MPMX19_03424 at 816.155 kb on + strand, within MPMX19_03424 at 816.156 kb on - strand, within MPMX19_03424 at 816.156 kb on - strand, within MPMX19_03424 at 816.156 kb on - strand, within MPMX19_03424 at 816.156 kb on - strand, within MPMX19_03424 at 816.156 kb on - strand, within MPMX19_03424 at 816.156 kb on - strand, within MPMX19_03424 at 816.156 kb on - strand, within MPMX19_03424 at 816.156 kb on - strand, within MPMX19_03424 at 816.447 kb on - strand, within MPMX19_03424 at 816.662 kb on + strand at 816.662 kb on + strand at 816.662 kb on + strand at 816.662 kb on + strand at 816.662 kb on + strand at 816.663 kb on - strand at 816.663 kb on - strand at 816.663 kb on - strand at 816.834 kb on + strand, within MPMX19_03425 at 816.835 kb on - strand, within MPMX19_03425 at 816.835 kb on - strand, within MPMX19_03425 at 817.033 kb on - strand at 817.033 kb on - strand at 817.033 kb on - strand at 817.033 kb on - strand at 817.140 kb on + strand, within MPMX19_03426 at 817.140 kb on + strand, within MPMX19_03426 at 817.140 kb on + strand, within MPMX19_03426 at 817.140 kb on + strand, within MPMX19_03426 at 817.141 kb on - strand, within MPMX19_03426 at 817.263 kb on + strand, within MPMX19_03426 at 817.263 kb on + strand, within MPMX19_03426 at 817.263 kb on + strand, within MPMX19_03426 at 817.263 kb on + strand, within MPMX19_03426 at 817.263 kb on + strand, within MPMX19_03426 at 817.264 kb on - strand, within MPMX19_03426 at 817.264 kb on - strand, within MPMX19_03426 at 817.264 kb on - strand, within MPMX19_03426 at 817.271 kb on + strand, within MPMX19_03426 at 817.271 kb on + strand, within MPMX19_03426 at 817.271 kb on + strand, within MPMX19_03426 at 817.271 kb on + strand, within MPMX19_03426 at 817.271 kb on + strand, within MPMX19_03426 at 817.271 kb on + strand, within MPMX19_03426 at 817.271 kb on + strand, within MPMX19_03426 at 817.271 kb on + strand, within MPMX19_03426 at 817.272 kb on - strand, within MPMX19_03426 at 817.272 kb on - strand, within MPMX19_03426 at 817.272 kb on - strand, within MPMX19_03426 at 817.272 kb on - strand, within MPMX19_03426 at 817.353 kb on + strand, within MPMX19_03426 at 817.353 kb on + strand, within MPMX19_03426 at 817.353 kb on + strand, within MPMX19_03426 at 817.353 kb on + strand, within MPMX19_03426 at 817.354 kb on - strand, within MPMX19_03426 at 817.354 kb on - strand, within MPMX19_03426 at 817.354 kb on - strand, within MPMX19_03426 at 817.354 kb on - strand, within MPMX19_03426 at 817.496 kb on + strand, within MPMX19_03426 at 817.525 kb on + strand, within MPMX19_03426 at 817.551 kb on + strand, within MPMX19_03426 at 817.551 kb on + strand, within MPMX19_03426 at 817.551 kb on + strand, within MPMX19_03426 at 817.551 kb on + strand, within MPMX19_03426 at 817.552 kb on - strand, within MPMX19_03426 at 817.552 kb on - strand, within MPMX19_03426 at 817.552 kb on - strand, within MPMX19_03426 at 817.552 kb on - strand, within MPMX19_03426 at 817.552 kb on - strand, within MPMX19_03426 at 817.593 kb on + strand, within MPMX19_03426 at 817.593 kb on + strand, within MPMX19_03426 at 817.594 kb on - strand, within MPMX19_03426 at 817.594 kb on - strand, within MPMX19_03426 at 817.617 kb on + strand, within MPMX19_03426 at 817.617 kb on + strand, within MPMX19_03426 at 817.617 kb on + strand, within MPMX19_03426 at 817.617 kb on + strand, within MPMX19_03426 at 817.617 kb on + strand, within MPMX19_03426 at 817.617 kb on + strand, within MPMX19_03426 at 817.617 kb on + strand, within MPMX19_03426 at 817.618 kb on - strand, within MPMX19_03426 at 817.618 kb on - strand, within MPMX19_03426 at 817.618 kb on - strand, within MPMX19_03426 at 817.618 kb on - strand, within MPMX19_03426 at 817.618 kb on - strand, within MPMX19_03426 at 817.618 kb on - strand, within MPMX19_03426 at 817.618 kb on - strand, within MPMX19_03426 at 817.618 kb on - strand, within MPMX19_03426 at 817.618 kb on - strand, within MPMX19_03426 at 817.618 kb on - strand, within MPMX19_03426 at 817.618 kb on - strand, within MPMX19_03426 at 817.618 kb on - strand, within MPMX19_03426 at 817.618 kb on - strand, within MPMX19_03426 at 817.714 kb on - strand, within MPMX19_03426 at 817.952 kb on + strand, within MPMX19_03426 at 817.952 kb on + strand, within MPMX19_03426 at 817.953 kb on - strand, within MPMX19_03426 at 817.953 kb on - strand, within MPMX19_03426 at 818.092 kb on - strand, within MPMX19_03426 at 818.181 kb on + strand, within MPMX19_03426 at 818.181 kb on + strand, within MPMX19_03426 at 818.181 kb on + strand, within MPMX19_03426 at 818.181 kb on + strand, within MPMX19_03426 at 818.181 kb on + strand, within MPMX19_03426 at 818.181 kb on + strand, within MPMX19_03426 at 818.182 kb on - strand, within MPMX19_03426 at 818.182 kb on - strand, within MPMX19_03426 at 818.182 kb on - strand, within MPMX19_03426 at 818.182 kb on - strand, within MPMX19_03426 at 818.398 kb on + strand at 818.399 kb on - strand at 818.399 kb on - strand at 818.445 kb on + strand at 818.446 kb on - strand at 818.455 kb on + strand at 818.455 kb on + strand at 818.455 kb on + strand at 818.455 kb on + strand at 818.455 kb on + strand at 818.456 kb on - strand at 818.557 kb on + strand at 818.557 kb on + strand at 818.558 kb on - strand at 818.558 kb on - strand at 819.183 kb on + strand, within MPMX19_03427 at 819.183 kb on + strand, within MPMX19_03427 at 819.184 kb on - strand, within MPMX19_03427 at 819.184 kb on - strand, within MPMX19_03427 at 819.184 kb on - strand, within MPMX19_03427 at 819.184 kb on - strand, within MPMX19_03427 at 819.194 kb on + strand, within MPMX19_03427 at 819.194 kb on + strand, within MPMX19_03427 at 819.194 kb on + strand, within MPMX19_03427 at 819.194 kb on + strand, within MPMX19_03427 at 819.194 kb on + strand, within MPMX19_03427 at 819.195 kb on - strand, within MPMX19_03427 at 819.195 kb on - strand, within MPMX19_03427 at 819.195 kb on - strand, within MPMX19_03427 at 819.353 kb on + strand at 819.354 kb on - strand at 819.354 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 816,077 + MPMX19_03424 0.14 -0.3 816,077 + MPMX19_03424 0.14 -0.8 816,077 + MPMX19_03424 0.14 -0.7 816,077 + MPMX19_03424 0.14 -0.6 816,077 + MPMX19_03424 0.14 -0.4 816,077 + MPMX19_03424 0.14 -2.5 816,077 + MPMX19_03424 0.14 -0.5 816,077 + MPMX19_03424 0.14 +0.5 816,077 + MPMX19_03424 0.14 +0.0 816,077 + MPMX19_03424 0.14 +1.5 816,077 + MPMX19_03424 0.14 -0.4 816,077 + MPMX19_03424 0.14 -0.7 816,077 + MPMX19_03424 0.14 -0.5 816,077 + MPMX19_03424 0.14 -1.4 816,078 - MPMX19_03424 0.14 -0.5 816,078 - MPMX19_03424 0.14 -1.6 816,078 - MPMX19_03424 0.14 -0.0 816,078 - MPMX19_03424 0.14 -1.5 816,078 - MPMX19_03424 0.14 +0.8 816,078 - MPMX19_03424 0.14 -0.1 816,078 - MPMX19_03424 0.14 -0.3 816,078 - MPMX19_03424 0.14 -1.3 816,078 - MPMX19_03424 0.14 -1.1 816,078 - MPMX19_03424 0.14 +0.0 816,078 - MPMX19_03424 0.14 -1.1 816,078 - MPMX19_03424 0.14 -1.2 816,078 - MPMX19_03424 0.14 -1.2 816,078 - MPMX19_03424 0.14 -0.5 816,155 + MPMX19_03424 0.25 +1.5 816,155 + MPMX19_03424 0.25 -1.0 816,155 + MPMX19_03424 0.25 +0.2 816,155 + MPMX19_03424 0.25 -0.5 816,155 + MPMX19_03424 0.25 +0.0 816,155 + MPMX19_03424 0.25 -0.3 816,155 + MPMX19_03424 0.25 -0.0 816,155 + MPMX19_03424 0.25 -0.2 816,155 + MPMX19_03424 0.25 +1.6 816,155 + MPMX19_03424 0.25 +0.3 816,155 + MPMX19_03424 0.25 -1.4 816,156 - MPMX19_03424 0.26 -0.7 816,156 - MPMX19_03424 0.26 -0.6 816,156 - MPMX19_03424 0.26 -1.8 816,156 - MPMX19_03424 0.26 -0.4 816,156 - MPMX19_03424 0.26 -1.2 816,156 - MPMX19_03424 0.26 -2.0 816,156 - MPMX19_03424 0.26 +1.3 816,156 - MPMX19_03424 0.26 -0.3 816,447 - MPMX19_03424 0.69 +0.3 816,662 + +0.9 816,662 + -0.4 816,662 + -1.0 816,662 + -2.2 816,662 + -0.8 816,663 - -1.0 816,663 - -2.9 816,663 - -0.4 816,834 + MPMX19_03425 0.53 +0.3 816,835 - MPMX19_03425 0.54 -0.5 816,835 - MPMX19_03425 0.54 -0.4 817,033 - +0.3 817,033 - +1.8 817,033 - +1.0 817,033 - -0.8 817,140 + MPMX19_03426 0.10 -1.2 817,140 + MPMX19_03426 0.10 -1.8 817,140 + MPMX19_03426 0.10 +0.7 817,140 + MPMX19_03426 0.10 -1.8 817,141 - MPMX19_03426 0.10 -0.1 817,263 + MPMX19_03426 0.19 -0.3 817,263 + MPMX19_03426 0.19 +0.8 817,263 + MPMX19_03426 0.19 -0.7 817,263 + MPMX19_03426 0.19 -0.1 817,263 + MPMX19_03426 0.19 -0.5 817,264 - MPMX19_03426 0.19 -1.0 817,264 - MPMX19_03426 0.19 +0.8 817,264 - MPMX19_03426 0.19 -0.8 817,271 + MPMX19_03426 0.20 -0.1 817,271 + MPMX19_03426 0.20 +0.9 817,271 + MPMX19_03426 0.20 -0.4 817,271 + MPMX19_03426 0.20 +2.0 817,271 + MPMX19_03426 0.20 -0.8 817,271 + MPMX19_03426 0.20 +0.8 817,271 + MPMX19_03426 0.20 +0.2 817,271 + MPMX19_03426 0.20 +0.1 817,272 - MPMX19_03426 0.20 -1.1 817,272 - MPMX19_03426 0.20 -0.9 817,272 - MPMX19_03426 0.20 -1.2 817,272 - MPMX19_03426 0.20 -0.4 817,353 + MPMX19_03426 0.25 -1.0 817,353 + MPMX19_03426 0.25 +0.2 817,353 + MPMX19_03426 0.25 -0.1 817,353 + MPMX19_03426 0.25 -0.0 817,354 - MPMX19_03426 0.25 -0.3 817,354 - MPMX19_03426 0.25 +2.2 817,354 - MPMX19_03426 0.25 -2.8 817,354 - MPMX19_03426 0.25 -2.0 817,496 + MPMX19_03426 0.35 +0.4 817,525 + MPMX19_03426 0.37 +0.0 817,551 + MPMX19_03426 0.39 -1.1 817,551 + MPMX19_03426 0.39 +2.0 817,551 + MPMX19_03426 0.39 -1.2 817,551 + MPMX19_03426 0.39 +0.2 817,552 - MPMX19_03426 0.39 +0.3 817,552 - MPMX19_03426 0.39 -1.0 817,552 - MPMX19_03426 0.39 +1.8 817,552 - MPMX19_03426 0.39 -0.4 817,552 - MPMX19_03426 0.39 -0.7 817,593 + MPMX19_03426 0.42 -0.8 817,593 + MPMX19_03426 0.42 -1.3 817,594 - MPMX19_03426 0.42 +0.5 817,594 - MPMX19_03426 0.42 +0.9 817,617 + MPMX19_03426 0.44 -0.1 817,617 + MPMX19_03426 0.44 +0.2 817,617 + MPMX19_03426 0.44 -0.1 817,617 + MPMX19_03426 0.44 -0.8 817,617 + MPMX19_03426 0.44 +0.0 817,617 + MPMX19_03426 0.44 +1.0 817,617 + MPMX19_03426 0.44 +0.8 817,618 - MPMX19_03426 0.44 -0.7 817,618 - MPMX19_03426 0.44 +0.5 817,618 - MPMX19_03426 0.44 -0.1 817,618 - MPMX19_03426 0.44 -0.3 817,618 - MPMX19_03426 0.44 +0.4 817,618 - MPMX19_03426 0.44 -1.7 817,618 - MPMX19_03426 0.44 +0.2 817,618 - MPMX19_03426 0.44 -0.3 817,618 - MPMX19_03426 0.44 +1.6 817,618 - MPMX19_03426 0.44 -0.1 817,618 - MPMX19_03426 0.44 +0.2 817,618 - MPMX19_03426 0.44 -0.8 817,618 - MPMX19_03426 0.44 +1.2 817,714 - MPMX19_03426 0.51 +1.3 817,952 + MPMX19_03426 0.67 -0.5 817,952 + MPMX19_03426 0.67 -0.6 817,953 - MPMX19_03426 0.67 -1.5 817,953 - MPMX19_03426 0.67 +0.8 818,092 - MPMX19_03426 0.77 -2.2 818,181 + MPMX19_03426 0.83 -1.3 818,181 + MPMX19_03426 0.83 -0.3 818,181 + MPMX19_03426 0.83 +1.2 818,181 + MPMX19_03426 0.83 -2.6 818,181 + MPMX19_03426 0.83 +0.5 818,181 + MPMX19_03426 0.83 -0.1 818,182 - MPMX19_03426 0.83 +0.1 818,182 - MPMX19_03426 0.83 -0.4 818,182 - MPMX19_03426 0.83 +0.7 818,182 - MPMX19_03426 0.83 +0.2 818,398 + +0.4 818,399 - -0.2 818,399 - +0.5 818,445 + +0.1 818,446 - +0.5 818,455 + +0.2 818,455 + -1.2 818,455 + -0.9 818,455 + -1.3 818,455 + -0.8 818,456 - -2.1 818,557 + +0.7 818,557 + -0.8 818,558 - -0.8 818,558 - +0.3 819,183 + MPMX19_03427 0.78 +0.5 819,183 + MPMX19_03427 0.78 +0.6 819,184 - MPMX19_03427 0.78 -1.8 819,184 - MPMX19_03427 0.78 -1.1 819,184 - MPMX19_03427 0.78 -0.4 819,184 - MPMX19_03427 0.78 +0.9 819,194 + MPMX19_03427 0.79 -2.3 819,194 + MPMX19_03427 0.79 -0.7 819,194 + MPMX19_03427 0.79 -0.3 819,194 + MPMX19_03427 0.79 +0.2 819,194 + MPMX19_03427 0.79 +0.4 819,195 - MPMX19_03427 0.79 +0.1 819,195 - MPMX19_03427 0.79 -2.0 819,195 - MPMX19_03427 0.79 -0.7 819,353 + -1.5 819,354 - +0.5 819,354 - -1.7
Or see this region's nucleotide sequence