Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03306

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03304 and MPMX19_03305 are separated by 19 nucleotidesMPMX19_03305 and MPMX19_03306 are separated by 31 nucleotidesMPMX19_03306 and MPMX19_03307 are separated by 24 nucleotides MPMX19_03304: MPMX19_03304 - Pyridoxal 4-dehydrogenase, at 650,919 to 651,947 _03304 MPMX19_03305: MPMX19_03305 - L-fucose mutarotase, at 651,967 to 652,422 _03305 MPMX19_03306: MPMX19_03306 - hypothetical protein, at 652,454 to 653,635 _03306 MPMX19_03307: MPMX19_03307 - Galactarate dehydratase (L-threo-forming), at 653,660 to 655,186 _03307 Position (kb) 652 653 654Strain fitness (log2 ratio) -2 -1 0 1at 651.681 kb on + strand, within MPMX19_03304at 651.681 kb on + strand, within MPMX19_03304at 651.681 kb on + strand, within MPMX19_03304at 651.682 kb on - strand, within MPMX19_03304at 651.682 kb on - strand, within MPMX19_03304at 651.687 kb on + strand, within MPMX19_03304at 651.688 kb on - strand, within MPMX19_03304at 651.875 kb on + strandat 651.959 kb on + strandat 651.959 kb on + strandat 651.959 kb on + strandat 651.959 kb on + strandat 651.960 kb on - strandat 651.960 kb on - strandat 651.960 kb on - strandat 651.960 kb on - strandat 651.960 kb on - strandat 652.318 kb on + strand, within MPMX19_03305at 652.318 kb on + strand, within MPMX19_03305at 652.318 kb on + strand, within MPMX19_03305at 652.318 kb on + strand, within MPMX19_03305at 652.318 kb on + strand, within MPMX19_03305at 652.319 kb on - strand, within MPMX19_03305at 652.319 kb on - strand, within MPMX19_03305at 652.319 kb on - strand, within MPMX19_03305at 652.319 kb on - strand, within MPMX19_03305at 652.319 kb on - strand, within MPMX19_03305at 652.372 kb on + strand, within MPMX19_03305at 652.372 kb on + strand, within MPMX19_03305at 652.373 kb on - strand, within MPMX19_03305at 652.420 kb on + strandat 652.502 kb on + strandat 652.502 kb on + strandat 652.502 kb on + strandat 652.580 kb on + strand, within MPMX19_03306at 652.580 kb on + strand, within MPMX19_03306at 652.580 kb on + strand, within MPMX19_03306at 652.580 kb on + strand, within MPMX19_03306at 652.581 kb on - strand, within MPMX19_03306at 652.941 kb on + strand, within MPMX19_03306at 652.942 kb on - strand, within MPMX19_03306at 652.942 kb on - strand, within MPMX19_03306at 652.942 kb on - strand, within MPMX19_03306at 652.967 kb on + strand, within MPMX19_03306at 652.968 kb on - strand, within MPMX19_03306at 653.850 kb on + strand, within MPMX19_03307at 653.850 kb on + strand, within MPMX19_03307at 653.850 kb on + strand, within MPMX19_03307at 653.850 kb on + strand, within MPMX19_03307at 653.850 kb on + strand, within MPMX19_03307at 653.850 kb on + strand, within MPMX19_03307at 653.851 kb on - strand, within MPMX19_03307at 653.851 kb on - strand, within MPMX19_03307at 653.851 kb on - strand, within MPMX19_03307at 653.851 kb on - strand, within MPMX19_03307at 653.851 kb on - strand, within MPMX19_03307at 653.851 kb on - strand, within MPMX19_03307at 653.851 kb on - strand, within MPMX19_03307at 653.901 kb on + strand, within MPMX19_03307at 653.901 kb on + strand, within MPMX19_03307at 653.902 kb on - strand, within MPMX19_03307at 653.902 kb on - strand, within MPMX19_03307at 653.980 kb on - strand, within MPMX19_03307at 654.030 kb on + strand, within MPMX19_03307at 654.031 kb on - strand, within MPMX19_03307at 654.168 kb on + strand, within MPMX19_03307at 654.168 kb on + strand, within MPMX19_03307at 654.168 kb on + strand, within MPMX19_03307at 654.168 kb on + strand, within MPMX19_03307at 654.168 kb on + strand, within MPMX19_03307at 654.168 kb on + strand, within MPMX19_03307at 654.168 kb on + strand, within MPMX19_03307at 654.168 kb on + strand, within MPMX19_03307at 654.168 kb on + strand, within MPMX19_03307at 654.169 kb on - strand, within MPMX19_03307at 654.169 kb on - strand, within MPMX19_03307at 654.169 kb on - strand, within MPMX19_03307at 654.169 kb on - strand, within MPMX19_03307at 654.169 kb on - strand, within MPMX19_03307at 654.169 kb on - strand, within MPMX19_03307at 654.169 kb on - strand, within MPMX19_03307at 654.169 kb on - strand, within MPMX19_03307at 654.169 kb on - strand, within MPMX19_03307at 654.169 kb on - strand, within MPMX19_03307at 654.169 kb on - strand, within MPMX19_03307at 654.169 kb on - strand, within MPMX19_03307at 654.169 kb on - strand, within MPMX19_03307at 654.255 kb on + strand, within MPMX19_03307at 654.255 kb on + strand, within MPMX19_03307at 654.255 kb on + strand, within MPMX19_03307at 654.352 kb on - strand, within MPMX19_03307

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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651,681 + MPMX19_03304 0.74 -1.1
651,681 + MPMX19_03304 0.74 -0.2
651,681 + MPMX19_03304 0.74 -0.7
651,682 - MPMX19_03304 0.74 -0.1
651,682 - MPMX19_03304 0.74 +0.9
651,687 + MPMX19_03304 0.75 +0.2
651,688 - MPMX19_03304 0.75 -0.8
651,875 + -0.5
651,959 + +0.2
651,959 + -0.2
651,959 + +0.5
651,959 + -0.2
651,960 - +0.3
651,960 - -0.5
651,960 - -1.7
651,960 - -2.6
651,960 - -0.4
652,318 + MPMX19_03305 0.77 -1.5
652,318 + MPMX19_03305 0.77 -0.5
652,318 + MPMX19_03305 0.77 -0.3
652,318 + MPMX19_03305 0.77 -0.1
652,318 + MPMX19_03305 0.77 -1.0
652,319 - MPMX19_03305 0.77 -1.3
652,319 - MPMX19_03305 0.77 -0.0
652,319 - MPMX19_03305 0.77 +1.7
652,319 - MPMX19_03305 0.77 +1.0
652,319 - MPMX19_03305 0.77 -0.6
652,372 + MPMX19_03305 0.89 +0.6
652,372 + MPMX19_03305 0.89 -2.0
652,373 - MPMX19_03305 0.89 +1.5
652,420 + -2.3
652,502 + +0.1
652,502 + -1.7
652,502 + -0.7
652,580 + MPMX19_03306 0.11 -0.3
652,580 + MPMX19_03306 0.11 -0.8
652,580 + MPMX19_03306 0.11 -0.9
652,580 + MPMX19_03306 0.11 -1.7
652,581 - MPMX19_03306 0.11 -0.7
652,941 + MPMX19_03306 0.41 -1.8
652,942 - MPMX19_03306 0.41 -0.3
652,942 - MPMX19_03306 0.41 -0.9
652,942 - MPMX19_03306 0.41 -0.4
652,967 + MPMX19_03306 0.43 -0.3
652,968 - MPMX19_03306 0.43 -2.0
653,850 + MPMX19_03307 0.12 -1.4
653,850 + MPMX19_03307 0.12 +0.4
653,850 + MPMX19_03307 0.12 +1.1
653,850 + MPMX19_03307 0.12 -1.1
653,850 + MPMX19_03307 0.12 +0.1
653,850 + MPMX19_03307 0.12 +0.5
653,851 - MPMX19_03307 0.13 -0.3
653,851 - MPMX19_03307 0.13 -0.3
653,851 - MPMX19_03307 0.13 -1.1
653,851 - MPMX19_03307 0.13 -0.1
653,851 - MPMX19_03307 0.13 -0.2
653,851 - MPMX19_03307 0.13 -0.7
653,851 - MPMX19_03307 0.13 +0.1
653,901 + MPMX19_03307 0.16 +0.3
653,901 + MPMX19_03307 0.16 +1.2
653,902 - MPMX19_03307 0.16 +0.1
653,902 - MPMX19_03307 0.16 -0.3
653,980 - MPMX19_03307 0.21 +0.9
654,030 + MPMX19_03307 0.24 +0.6
654,031 - MPMX19_03307 0.24 +0.0
654,168 + MPMX19_03307 0.33 -0.7
654,168 + MPMX19_03307 0.33 +0.2
654,168 + MPMX19_03307 0.33 -0.9
654,168 + MPMX19_03307 0.33 -1.0
654,168 + MPMX19_03307 0.33 -2.3
654,168 + MPMX19_03307 0.33 +0.6
654,168 + MPMX19_03307 0.33 -1.7
654,168 + MPMX19_03307 0.33 -0.6
654,168 + MPMX19_03307 0.33 +0.1
654,169 - MPMX19_03307 0.33 +0.5
654,169 - MPMX19_03307 0.33 -0.8
654,169 - MPMX19_03307 0.33 -1.0
654,169 - MPMX19_03307 0.33 +1.5
654,169 - MPMX19_03307 0.33 +0.3
654,169 - MPMX19_03307 0.33 -0.2
654,169 - MPMX19_03307 0.33 -0.3
654,169 - MPMX19_03307 0.33 -1.1
654,169 - MPMX19_03307 0.33 +0.7
654,169 - MPMX19_03307 0.33 +0.5
654,169 - MPMX19_03307 0.33 +0.9
654,169 - MPMX19_03307 0.33 -0.1
654,169 - MPMX19_03307 0.33 +0.2
654,255 + MPMX19_03307 0.39 -1.9
654,255 + MPMX19_03307 0.39 -0.7
654,255 + MPMX19_03307 0.39 -0.1
654,352 - MPMX19_03307 0.45 -0.7

Or see this region's nucleotide sequence