Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03250 and MPMX19_03251 are separated by 266 nucleotides MPMX19_03251 and MPMX19_03252 are separated by 268 nucleotides MPMX19_03252 and MPMX19_03253 are separated by 2 nucleotides
MPMX19_03250: MPMX19_03250 - Glycine cleavage system transcriptional activator, at 590,886 to 591,812
_03250
MPMX19_03251: MPMX19_03251 - hypothetical protein, at 592,079 to 592,546
_03251
MPMX19_03252: MPMX19_03252 - hypothetical protein, at 592,815 to 593,522
_03252
MPMX19_03253: MPMX19_03253 - 4-hydroxy-tetrahydrodipicolinate synthase, at 593,525 to 594,436
_03253
Position (kb) 592
593 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 591.307 kb on + strand, within MPMX19_03250 at 591.307 kb on + strand, within MPMX19_03250 at 591.307 kb on + strand, within MPMX19_03250 at 591.307 kb on + strand, within MPMX19_03250 at 591.307 kb on + strand, within MPMX19_03250 at 591.308 kb on - strand, within MPMX19_03250 at 591.308 kb on - strand, within MPMX19_03250 at 591.308 kb on - strand, within MPMX19_03250 at 591.308 kb on - strand, within MPMX19_03250 at 591.591 kb on - strand, within MPMX19_03250 at 591.595 kb on + strand, within MPMX19_03250 at 591.595 kb on + strand, within MPMX19_03250 at 591.595 kb on + strand, within MPMX19_03250 at 591.595 kb on + strand, within MPMX19_03250 at 591.596 kb on - strand, within MPMX19_03250 at 591.596 kb on - strand, within MPMX19_03250 at 591.596 kb on - strand, within MPMX19_03250 at 591.596 kb on - strand, within MPMX19_03250 at 591.596 kb on - strand, within MPMX19_03250 at 591.596 kb on - strand, within MPMX19_03250 at 591.596 kb on - strand, within MPMX19_03250 at 591.911 kb on + strand at 591.911 kb on + strand at 591.981 kb on + strand at 591.982 kb on - strand at 591.982 kb on - strand at 591.982 kb on - strand at 591.982 kb on - strand at 592.090 kb on + strand at 592.090 kb on + strand at 592.090 kb on + strand at 592.091 kb on - strand at 592.190 kb on + strand, within MPMX19_03251 at 592.190 kb on + strand, within MPMX19_03251 at 592.190 kb on + strand, within MPMX19_03251 at 592.190 kb on + strand, within MPMX19_03251 at 592.190 kb on + strand, within MPMX19_03251 at 592.190 kb on + strand, within MPMX19_03251 at 592.191 kb on - strand, within MPMX19_03251 at 592.191 kb on - strand, within MPMX19_03251 at 592.191 kb on - strand, within MPMX19_03251 at 592.295 kb on + strand, within MPMX19_03251 at 592.295 kb on + strand, within MPMX19_03251 at 592.295 kb on + strand, within MPMX19_03251 at 592.296 kb on - strand, within MPMX19_03251 at 592.792 kb on - strand at 592.839 kb on + strand at 592.920 kb on + strand, within MPMX19_03252 at 592.920 kb on + strand, within MPMX19_03252 at 592.920 kb on + strand, within MPMX19_03252 at 592.920 kb on + strand, within MPMX19_03252 at 592.921 kb on - strand, within MPMX19_03252 at 592.977 kb on + strand, within MPMX19_03252 at 592.978 kb on - strand, within MPMX19_03252 at 593.025 kb on + strand, within MPMX19_03252 at 593.025 kb on + strand, within MPMX19_03252 at 593.026 kb on - strand, within MPMX19_03252 at 593.067 kb on + strand, within MPMX19_03252 at 593.067 kb on + strand, within MPMX19_03252 at 593.067 kb on + strand, within MPMX19_03252 at 593.068 kb on - strand, within MPMX19_03252 at 593.068 kb on - strand, within MPMX19_03252 at 593.068 kb on - strand, within MPMX19_03252 at 593.270 kb on - strand, within MPMX19_03252 at 593.540 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 591,307 + MPMX19_03250 0.45 +0.4 591,307 + MPMX19_03250 0.45 -2.1 591,307 + MPMX19_03250 0.45 -0.2 591,307 + MPMX19_03250 0.45 +0.1 591,307 + MPMX19_03250 0.45 -1.2 591,308 - MPMX19_03250 0.46 +1.8 591,308 - MPMX19_03250 0.46 +0.8 591,308 - MPMX19_03250 0.46 +0.1 591,308 - MPMX19_03250 0.46 +0.3 591,591 - MPMX19_03250 0.76 -1.2 591,595 + MPMX19_03250 0.76 +0.2 591,595 + MPMX19_03250 0.76 -0.6 591,595 + MPMX19_03250 0.76 +0.8 591,595 + MPMX19_03250 0.76 +0.9 591,596 - MPMX19_03250 0.77 -1.8 591,596 - MPMX19_03250 0.77 +1.1 591,596 - MPMX19_03250 0.77 +1.2 591,596 - MPMX19_03250 0.77 +0.9 591,596 - MPMX19_03250 0.77 -1.5 591,596 - MPMX19_03250 0.77 -0.1 591,596 - MPMX19_03250 0.77 -0.6 591,911 + -0.7 591,911 + -0.2 591,981 + -0.3 591,982 - -1.2 591,982 - -0.8 591,982 - -1.5 591,982 - +0.0 592,090 + +0.8 592,090 + -1.1 592,090 + -0.5 592,091 - +1.3 592,190 + MPMX19_03251 0.24 -0.5 592,190 + MPMX19_03251 0.24 +0.5 592,190 + MPMX19_03251 0.24 -1.4 592,190 + MPMX19_03251 0.24 -1.3 592,190 + MPMX19_03251 0.24 -1.9 592,190 + MPMX19_03251 0.24 -1.8 592,191 - MPMX19_03251 0.24 +0.3 592,191 - MPMX19_03251 0.24 -0.9 592,191 - MPMX19_03251 0.24 -1.1 592,295 + MPMX19_03251 0.46 -0.1 592,295 + MPMX19_03251 0.46 -0.7 592,295 + MPMX19_03251 0.46 -0.9 592,296 - MPMX19_03251 0.46 -1.9 592,792 - -2.9 592,839 + -0.1 592,920 + MPMX19_03252 0.15 +0.8 592,920 + MPMX19_03252 0.15 -1.7 592,920 + MPMX19_03252 0.15 +0.4 592,920 + MPMX19_03252 0.15 -1.3 592,921 - MPMX19_03252 0.15 -1.2 592,977 + MPMX19_03252 0.23 -0.3 592,978 - MPMX19_03252 0.23 -2.2 593,025 + MPMX19_03252 0.30 -0.9 593,025 + MPMX19_03252 0.30 +0.5 593,026 - MPMX19_03252 0.30 -1.7 593,067 + MPMX19_03252 0.36 -1.3 593,067 + MPMX19_03252 0.36 -2.0 593,067 + MPMX19_03252 0.36 -0.3 593,068 - MPMX19_03252 0.36 -1.3 593,068 - MPMX19_03252 0.36 +0.3 593,068 - MPMX19_03252 0.36 -0.8 593,270 - MPMX19_03252 0.64 -1.8 593,540 - -1.1
Or see this region's nucleotide sequence