Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02704

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
2,830,916	+		MPMX19_02703	0.69	-0.3
2,830,916	+		MPMX19_02703	0.69	+1.4
2,830,916	+		MPMX19_02703	0.69	+0.0
2,830,916	+		MPMX19_02703	0.69	+0.6
2,830,916	+		MPMX19_02703	0.69	-0.5
2,830,917	-		MPMX19_02703	0.69	-1.9
2,830,917	-		MPMX19_02703	0.69	-0.8
2,831,221	+				+0.5
2,831,424	-				-0.3
2,831,517	+				-0.8
2,831,518	-				-1.5
2,831,591	+				+0.7
2,831,592	-				-0.9
2,831,592	-				-1.5
2,831,592	-				-1.2
2,831,620	-				-0.0
2,831,632	+				+0.1
2,831,632	+				-0.3
2,831,632	+				-2.0
2,831,632	+				+0.3
2,831,632	+				+1.0
2,831,632	+				+1.7
2,831,673	+				-1.0
2,831,674	-				-1.1
2,831,674	-				+0.5
2,831,674	-				-0.5
2,831,674	-				-0.2
2,831,674	-				-0.7
2,831,674	-				-0.3
2,831,692	+				-1.6
2,831,692	+				-1.9
2,831,693	-				-0.3
2,831,693	-				-1.2
2,831,693	-				-0.4
2,831,693	-				+1.1
2,831,733	+				+0.5
2,831,734	-				+0.3
2,831,793	+		MPMX19_02704	0.10	-0.4
2,831,793	+		MPMX19_02704	0.10	-0.9
2,831,793	+		MPMX19_02704	0.10	+0.2
2,831,793	+		MPMX19_02704	0.10	-0.2
2,831,813	-		MPMX19_02704	0.11	+1.2
2,831,848	-		MPMX19_02704	0.13	-0.7
2,831,848	-		MPMX19_02704	0.13	-0.2
2,831,849	-		MPMX19_02704	0.13	-0.5
2,831,983	+		MPMX19_02704	0.21	-0.6
2,831,983	+		MPMX19_02704	0.21	-0.6
2,831,983	+		MPMX19_02704	0.21	-1.5
2,832,426	+		MPMX19_02704	0.46	-1.3
2,832,426	+		MPMX19_02704	0.46	+0.3
2,832,426	+		MPMX19_02704	0.46	+0.5
2,832,426	+		MPMX19_02704	0.46	-0.9
2,832,426	+		MPMX19_02704	0.46	-0.9
2,832,426	+		MPMX19_02704	0.46	-2.5
2,832,426	+		MPMX19_02704	0.46	-2.2
2,832,426	+		MPMX19_02704	0.46	-2.4
2,832,426	+		MPMX19_02704	0.46	-1.8
2,832,427	-		MPMX19_02704	0.46	-1.3
2,832,427	-		MPMX19_02704	0.46	-1.8
2,832,427	-		MPMX19_02704	0.46	+0.1
2,832,427	-		MPMX19_02704	0.46	-2.0
2,832,427	-		MPMX19_02704	0.46	+0.7
2,832,427	-		MPMX19_02704	0.46	-0.5
2,832,427	-		MPMX19_02704	0.46	-2.5
2,832,427	-		MPMX19_02704	0.46	-2.1
2,832,427	-		MPMX19_02704	0.46	+0.1
2,832,427	-		MPMX19_02704	0.46	-0.3
2,832,427	-		MPMX19_02704	0.46	-0.9
2,832,427	-		MPMX19_02704	0.46	+0.1
2,832,427	-		MPMX19_02704	0.46	-0.7
2,832,427	-		MPMX19_02704	0.46	-3.4
2,832,427	-		MPMX19_02704	0.46	-0.0
2,832,427	-		MPMX19_02704	0.46	+0.1
2,832,427	-		MPMX19_02704	0.46	-0.5
2,832,427	-		MPMX19_02704	0.46	-1.0
2,832,427	-		MPMX19_02704	0.46	-0.1
2,832,428	+		MPMX19_02704	0.46	+0.7
2,832,428	+		MPMX19_02704	0.46	-0.1
2,832,428	+		MPMX19_02704	0.46	-0.8
2,832,428	+		MPMX19_02704	0.46	-0.7
2,832,428	+		MPMX19_02704	0.46	-1.2
2,832,428	+		MPMX19_02704	0.46	-0.2
2,832,428	+		MPMX19_02704	0.46	+0.5
2,832,428	+		MPMX19_02704	0.46	-2.2
2,832,428	+		MPMX19_02704	0.46	-0.8
2,832,428	+		MPMX19_02704	0.46	-1.3
2,832,428	+		MPMX19_02704	0.46	+0.5
2,832,428	+		MPMX19_02704	0.46	+1.1
2,832,428	+		MPMX19_02704	0.46	-0.3
2,832,428	+		MPMX19_02704	0.46	-0.8
2,832,428	+		MPMX19_02704	0.46	+0.4
2,832,428	+		MPMX19_02704	0.46	-0.7
2,832,428	+		MPMX19_02704	0.46	-0.8
2,832,428	+		MPMX19_02704	0.46	+0.6
2,832,428	+		MPMX19_02704	0.46	+0.3
2,832,428	+		MPMX19_02704	0.46	-0.6
2,832,428	+		MPMX19_02704	0.46	-0.1
2,832,428	+		MPMX19_02704	0.46	-2.2
2,832,428	+		MPMX19_02704	0.46	-1.7
2,832,428	+		MPMX19_02704	0.46	-1.6
2,832,428	+		MPMX19_02704	0.46	-2.1
2,832,429	-		MPMX19_02704	0.46	-0.1
2,832,429	-		MPMX19_02704	0.46	+0.7
2,832,429	-		MPMX19_02704	0.46	-0.1
2,832,429	-		MPMX19_02704	0.46	-1.1
2,832,429	-		MPMX19_02704	0.46	-1.1
2,832,429	-		MPMX19_02704	0.46	-0.6
2,832,429	-		MPMX19_02704	0.46	+0.6
2,832,429	-		MPMX19_02704	0.46	-0.1
2,832,429	-		MPMX19_02704	0.46	-1.0
2,832,429	-		MPMX19_02704	0.46	-0.5
2,832,429	-		MPMX19_02704	0.46	-0.6
2,832,429	-		MPMX19_02704	0.46	-1.7
2,832,429	-		MPMX19_02704	0.46	-0.2
2,832,429	-		MPMX19_02704	0.46	-0.7
2,832,429	-		MPMX19_02704	0.46	+0.3
2,832,429	-		MPMX19_02704	0.46	+0.7
2,832,429	-		MPMX19_02704	0.46	-2.2
2,832,429	-		MPMX19_02704	0.46	+0.5
2,832,429	-		MPMX19_02704	0.46	-0.0
2,832,459	+		MPMX19_02704	0.48	-0.2
2,832,459	+		MPMX19_02704	0.48	+1.0
2,832,459	+		MPMX19_02704	0.48	-0.7
2,832,459	+		MPMX19_02704	0.48	-1.6
2,832,459	+		MPMX19_02704	0.48	-1.4
2,832,459	+		MPMX19_02704	0.48	+0.4
2,832,459	+		MPMX19_02704	0.48	+0.7
2,832,459	+		MPMX19_02704	0.48	+0.0
2,832,459	+		MPMX19_02704	0.48	-3.2
2,832,459	+		MPMX19_02704	0.48	-0.1
2,832,459	+		MPMX19_02704	0.48	-1.2
2,832,459	+		MPMX19_02704	0.48	-1.2
2,832,459	+		MPMX19_02704	0.48	-0.5
2,832,459	+		MPMX19_02704	0.48	-0.1
2,832,459	+		MPMX19_02704	0.48	-0.3
2,832,459	+		MPMX19_02704	0.48	+0.9
2,832,459	+		MPMX19_02704	0.48	-0.6
2,832,460	-		MPMX19_02704	0.48	+0.7
2,832,460	-		MPMX19_02704	0.48	-0.7
2,832,460	-		MPMX19_02704	0.48	-2.0
2,832,460	-		MPMX19_02704	0.48	+1.7
2,832,460	-		MPMX19_02704	0.48	-0.6
2,832,460	-		MPMX19_02704	0.48	-1.2
2,832,460	-		MPMX19_02704	0.48	+0.1
2,832,460	-		MPMX19_02704	0.48	-0.1
2,832,460	-		MPMX19_02704	0.48	+0.0
2,832,546	+		MPMX19_02704	0.53	-0.1
2,832,547	-		MPMX19_02704	0.53	+0.1
2,832,570	+		MPMX19_02704	0.54	+0.6
2,832,570	+		MPMX19_02704	0.54	+0.3
2,832,571	-		MPMX19_02704	0.54	-0.5
2,832,746	+		MPMX19_02704	0.64	-0.8
2,832,746	+		MPMX19_02704	0.64	-0.7
2,832,746	+		MPMX19_02704	0.64	+0.1
2,832,746	+		MPMX19_02704	0.64	-1.3
2,832,746	+		MPMX19_02704	0.64	+1.0
2,832,746	+		MPMX19_02704	0.64	+0.4
2,832,747	-		MPMX19_02704	0.64	-0.3
2,832,747	-		MPMX19_02704	0.64	+0.1
2,832,747	-		MPMX19_02704	0.64	-1.6
2,832,747	-		MPMX19_02704	0.64	+0.2
2,832,747	-		MPMX19_02704	0.64	-0.2
2,832,747	-		MPMX19_02704	0.64	+1.2
2,832,747	-		MPMX19_02704	0.64	+0.0
2,832,747	-		MPMX19_02704	0.64	-0.6
2,832,747	-		MPMX19_02704	0.64	-1.2
2,832,831	+		MPMX19_02704	0.69	+0.6
2,832,832	-		MPMX19_02704	0.69	-0.1
2,832,832	-		MPMX19_02704	0.69	-1.4
2,832,832	-		MPMX19_02704	0.69	-1.5
2,832,832	-		MPMX19_02704	0.69	+0.9
2,832,832	-		MPMX19_02704	0.69	-2.0
2,832,900	+		MPMX19_02704	0.73	-1.1
2,832,900	+		MPMX19_02704	0.73	-1.5
2,832,900	+		MPMX19_02704	0.73	+0.9
2,832,900	+		MPMX19_02704	0.73	-0.2
2,832,900	+		MPMX19_02704	0.73	-1.1
2,832,900	+		MPMX19_02704	0.73	+1.0
2,832,900	+		MPMX19_02704	0.73	-1.1
2,832,900	+		MPMX19_02704	0.73	-0.9
2,832,900	+		MPMX19_02704	0.73	+0.7
2,832,900	+		MPMX19_02704	0.73	-0.6
2,832,900	+		MPMX19_02704	0.73	-1.5
2,832,901	-		MPMX19_02704	0.73	-0.9
2,832,901	-		MPMX19_02704	0.73	-0.2
2,832,901	-		MPMX19_02704	0.73	-0.3
2,832,901	-		MPMX19_02704	0.73	-1.1
2,832,901	-		MPMX19_02704	0.73	-1.3
2,832,901	-		MPMX19_02704	0.73	-0.0
2,832,901	-		MPMX19_02704	0.73	-1.3
2,832,901	-		MPMX19_02704	0.73	+0.2
2,832,901	-		MPMX19_02704	0.73	+0.5
2,832,901	-		MPMX19_02704	0.73	-1.5
2,832,901	-		MPMX19_02704	0.73	-2.5
2,832,901	-		MPMX19_02704	0.73	-0.4
2,833,002	+		MPMX19_02704	0.78	+0.5
2,833,002	+		MPMX19_02704	0.78	-0.7
2,833,002	+		MPMX19_02704	0.78	-0.5
2,833,002	+		MPMX19_02704	0.78	-1.4
2,833,003	-		MPMX19_02704	0.78	-0.4
2,833,003	-		MPMX19_02704	0.78	-1.8
2,833,003	-		MPMX19_02704	0.78	-0.2
2,833,003	-		MPMX19_02704	0.78	+0.0
2,833,003	-		MPMX19_02704	0.78	+0.5
2,833,003	-		MPMX19_02704	0.78	-0.1
2,833,050	+		MPMX19_02704	0.81	+0.4
2,833,050	+		MPMX19_02704	0.81	+0.3
2,833,050	+		MPMX19_02704	0.81	-1.4
2,833,050	+		MPMX19_02704	0.81	-0.9
2,833,050	+		MPMX19_02704	0.81	-1.9
2,833,051	-		MPMX19_02704	0.81	-0.7
2,833,051	-		MPMX19_02704	0.81	+1.1
2,833,051	-		MPMX19_02704	0.81	-2.2
2,833,051	-		MPMX19_02704	0.81	+0.5
2,833,051	-		MPMX19_02704	0.81	-0.5
2,833,203	+		MPMX19_02704	0.90	-0.1
2,833,203	+		MPMX19_02704	0.90	-1.4
2,833,203	+		MPMX19_02704	0.90	-0.7
2,833,203	+		MPMX19_02704	0.90	-0.9
2,833,204	-		MPMX19_02704	0.90	-1.1
2,833,204	-		MPMX19_02704	0.90	-0.3
2,833,204	-		MPMX19_02704	0.90	-1.0
2,833,204	-		MPMX19_02704	0.90	+0.7
2,833,204	-		MPMX19_02704	0.90	-0.4
2,833,204	-		MPMX19_02704	0.90	+0.3
2,833,204	-		MPMX19_02704	0.90	+0.6
2,833,398	+				+0.3
2,833,398	+				-1.7
2,833,398	+				-0.3
2,833,398	+				-0.0
2,833,399	-				-0.7
2,833,399	-				-1.0
2,833,399	-				-0.6
2,833,399	-				-1.7
2,833,399	-				-0.3
2,833,399	-				+0.4
2,833,483	+				-0.9
2,833,586	+				-0.1
2,833,773	+		MPMX19_02705	0.17	-0.5
2,833,773	+		MPMX19_02705	0.17	-0.2
2,834,064	+		MPMX19_02705	0.31	+1.1
2,834,064	+		MPMX19_02705	0.31	-0.3
2,834,065	-		MPMX19_02705	0.31	-1.6
2,834,065	-		MPMX19_02705	0.31	-0.9
2,834,065	-		MPMX19_02705	0.31	-0.4
2,834,065	-		MPMX19_02705	0.31	-0.4
2,834,065	-		MPMX19_02705	0.31	-1.5
2,834,169	+		MPMX19_02705	0.36	+1.5
2,834,169	+		MPMX19_02705	0.36	-0.3
2,834,170	-		MPMX19_02705	0.36	+1.6
2,834,170	-		MPMX19_02705	0.36	-1.3
2,834,170	-		MPMX19_02705	0.36	+0.3
2,834,170	-		MPMX19_02705	0.36	+0.3
2,834,170	-		MPMX19_02705	0.36	-0.5
2,834,170	-		MPMX19_02705	0.36	-0.3
2,834,170	-		MPMX19_02705	0.36	+1.1
2,834,170	-		MPMX19_02705	0.36	+0.1
2,834,170	-		MPMX19_02705	0.36	-1.3