Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01667

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01666 and MPMX19_01667 overlap by 4 nucleotidesMPMX19_01667 and MPMX19_01668 are separated by 7 nucleotides MPMX19_01666: MPMX19_01666 - ABC transporter ATP-binding protein uup, at 1,751,685 to 1,753,517 _01666 MPMX19_01667: MPMX19_01667 - putative amino-acid metabolite efflux pump, at 1,753,514 to 1,754,392 _01667 MPMX19_01668: MPMX19_01668 - N-acetylmuramoyl-L-alanine amidase AmiD, at 1,754,400 to 1,755,092 _01668 Position (kb) 1753 1754 1755Strain fitness (log2 ratio) -2 -1 0 1at 1752.753 kb on + strand, within MPMX19_01666at 1752.754 kb on - strand, within MPMX19_01666at 1752.754 kb on - strand, within MPMX19_01666at 1752.754 kb on - strand, within MPMX19_01666at 1752.867 kb on + strand, within MPMX19_01666at 1752.867 kb on + strand, within MPMX19_01666at 1752.867 kb on + strand, within MPMX19_01666at 1752.867 kb on + strand, within MPMX19_01666at 1752.867 kb on + strand, within MPMX19_01666at 1752.867 kb on + strand, within MPMX19_01666at 1752.867 kb on + strand, within MPMX19_01666at 1752.868 kb on - strand, within MPMX19_01666at 1752.868 kb on - strand, within MPMX19_01666at 1752.868 kb on - strand, within MPMX19_01666at 1752.868 kb on - strand, within MPMX19_01666at 1753.056 kb on + strand, within MPMX19_01666at 1753.056 kb on + strand, within MPMX19_01666at 1753.056 kb on + strand, within MPMX19_01666at 1753.056 kb on + strand, within MPMX19_01666at 1753.056 kb on + strand, within MPMX19_01666at 1753.056 kb on + strand, within MPMX19_01666at 1753.057 kb on - strand, within MPMX19_01666at 1753.057 kb on - strand, within MPMX19_01666at 1753.057 kb on - strand, within MPMX19_01666at 1753.057 kb on - strand, within MPMX19_01666at 1753.057 kb on - strand, within MPMX19_01666at 1753.155 kb on + strand, within MPMX19_01666at 1753.155 kb on + strand, within MPMX19_01666at 1753.155 kb on + strand, within MPMX19_01666at 1753.156 kb on - strand, within MPMX19_01666at 1753.156 kb on - strand, within MPMX19_01666at 1753.156 kb on - strand, within MPMX19_01666at 1753.156 kb on - strand, within MPMX19_01666at 1753.176 kb on + strand, within MPMX19_01666at 1753.176 kb on + strand, within MPMX19_01666at 1753.176 kb on + strand, within MPMX19_01666at 1753.177 kb on - strand, within MPMX19_01666at 1753.177 kb on - strand, within MPMX19_01666at 1753.177 kb on - strand, within MPMX19_01666at 1753.177 kb on - strand, within MPMX19_01666at 1753.177 kb on - strand, within MPMX19_01666at 1753.177 kb on - strand, within MPMX19_01666at 1753.284 kb on + strand, within MPMX19_01666at 1753.284 kb on + strand, within MPMX19_01666at 1753.284 kb on + strand, within MPMX19_01666at 1753.284 kb on + strand, within MPMX19_01666at 1753.284 kb on + strand, within MPMX19_01666at 1753.284 kb on + strand, within MPMX19_01666at 1753.285 kb on - strand, within MPMX19_01666at 1753.285 kb on - strand, within MPMX19_01666at 1753.285 kb on - strand, within MPMX19_01666at 1753.285 kb on - strand, within MPMX19_01666at 1753.285 kb on - strand, within MPMX19_01666at 1753.285 kb on - strand, within MPMX19_01666at 1753.285 kb on - strand, within MPMX19_01666at 1753.285 kb on - strand, within MPMX19_01666at 1754.067 kb on + strand, within MPMX19_01667at 1754.067 kb on + strand, within MPMX19_01667at 1754.068 kb on - strand, within MPMX19_01667at 1754.068 kb on - strand, within MPMX19_01667at 1754.068 kb on - strand, within MPMX19_01667at 1754.068 kb on - strand, within MPMX19_01667at 1754.068 kb on - strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.171 kb on + strand, within MPMX19_01667at 1754.171 kb on + strand, within MPMX19_01667at 1754.171 kb on + strand, within MPMX19_01667at 1754.171 kb on + strand, within MPMX19_01667at 1754.172 kb on - strand, within MPMX19_01667at 1754.172 kb on - strand, within MPMX19_01667at 1754.172 kb on - strand, within MPMX19_01667at 1754.201 kb on + strand, within MPMX19_01667at 1754.201 kb on + strand, within MPMX19_01667at 1754.201 kb on + strand, within MPMX19_01667at 1754.201 kb on + strand, within MPMX19_01667at 1754.202 kb on - strand, within MPMX19_01667at 1754.202 kb on - strand, within MPMX19_01667at 1754.202 kb on - strand, within MPMX19_01667at 1754.202 kb on - strand, within MPMX19_01667at 1754.225 kb on + strand, within MPMX19_01667at 1754.225 kb on + strand, within MPMX19_01667at 1754.225 kb on + strand, within MPMX19_01667at 1754.225 kb on + strand, within MPMX19_01667at 1754.225 kb on + strand, within MPMX19_01667at 1754.225 kb on + strand, within MPMX19_01667at 1754.225 kb on + strand, within MPMX19_01667at 1754.225 kb on + strand, within MPMX19_01667at 1754.225 kb on + strand, within MPMX19_01667at 1754.225 kb on + strand, within MPMX19_01667at 1754.225 kb on + strand, within MPMX19_01667at 1754.226 kb on - strand, within MPMX19_01667at 1754.226 kb on - strand, within MPMX19_01667at 1754.226 kb on - strand, within MPMX19_01667at 1754.226 kb on - strand, within MPMX19_01667at 1754.226 kb on - strand, within MPMX19_01667at 1754.226 kb on - strand, within MPMX19_01667at 1754.226 kb on - strand, within MPMX19_01667at 1754.226 kb on - strand, within MPMX19_01667at 1754.226 kb on - strand, within MPMX19_01667at 1754.226 kb on - strand, within MPMX19_01667at 1754.226 kb on - strand, within MPMX19_01667at 1754.487 kb on + strand, within MPMX19_01668at 1754.488 kb on - strand, within MPMX19_01668at 1754.559 kb on + strand, within MPMX19_01668at 1754.586 kb on + strand, within MPMX19_01668at 1754.959 kb on - strand, within MPMX19_01668at 1754.964 kb on + strand, within MPMX19_01668at 1755.033 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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1,752,753 + MPMX19_01666 0.58 +1.0
1,752,754 - MPMX19_01666 0.58 -0.0
1,752,754 - MPMX19_01666 0.58 +0.4
1,752,754 - MPMX19_01666 0.58 +0.8
1,752,867 + MPMX19_01666 0.64 -1.5
1,752,867 + MPMX19_01666 0.64 +1.5
1,752,867 + MPMX19_01666 0.64 -0.3
1,752,867 + MPMX19_01666 0.64 -0.7
1,752,867 + MPMX19_01666 0.64 +0.3
1,752,867 + MPMX19_01666 0.64 -0.8
1,752,867 + MPMX19_01666 0.64 +1.5
1,752,868 - MPMX19_01666 0.65 +0.1
1,752,868 - MPMX19_01666 0.65 -0.5
1,752,868 - MPMX19_01666 0.65 +0.1
1,752,868 - MPMX19_01666 0.65 -0.7
1,753,056 + MPMX19_01666 0.75 -2.0
1,753,056 + MPMX19_01666 0.75 +0.1
1,753,056 + MPMX19_01666 0.75 -0.8
1,753,056 + MPMX19_01666 0.75 +0.7
1,753,056 + MPMX19_01666 0.75 -0.0
1,753,056 + MPMX19_01666 0.75 -0.3
1,753,057 - MPMX19_01666 0.75 +1.3
1,753,057 - MPMX19_01666 0.75 -2.2
1,753,057 - MPMX19_01666 0.75 -0.2
1,753,057 - MPMX19_01666 0.75 -0.1
1,753,057 - MPMX19_01666 0.75 -0.2
1,753,155 + MPMX19_01666 0.80 -1.3
1,753,155 + MPMX19_01666 0.80 +0.9
1,753,155 + MPMX19_01666 0.80 -0.0
1,753,156 - MPMX19_01666 0.80 +1.3
1,753,156 - MPMX19_01666 0.80 -0.1
1,753,156 - MPMX19_01666 0.80 -0.0
1,753,156 - MPMX19_01666 0.80 +1.6
1,753,176 + MPMX19_01666 0.81 -1.6
1,753,176 + MPMX19_01666 0.81 +0.8
1,753,176 + MPMX19_01666 0.81 -1.0
1,753,177 - MPMX19_01666 0.81 -1.8
1,753,177 - MPMX19_01666 0.81 -1.5
1,753,177 - MPMX19_01666 0.81 -1.8
1,753,177 - MPMX19_01666 0.81 -0.3
1,753,177 - MPMX19_01666 0.81 -1.0
1,753,177 - MPMX19_01666 0.81 +0.5
1,753,284 + MPMX19_01666 0.87 -0.9
1,753,284 + MPMX19_01666 0.87 -0.1
1,753,284 + MPMX19_01666 0.87 +0.1
1,753,284 + MPMX19_01666 0.87 -0.7
1,753,284 + MPMX19_01666 0.87 -0.0
1,753,284 + MPMX19_01666 0.87 +0.3
1,753,285 - MPMX19_01666 0.87 -0.7
1,753,285 - MPMX19_01666 0.87 +0.3
1,753,285 - MPMX19_01666 0.87 +0.2
1,753,285 - MPMX19_01666 0.87 -0.3
1,753,285 - MPMX19_01666 0.87 -2.3
1,753,285 - MPMX19_01666 0.87 -1.4
1,753,285 - MPMX19_01666 0.87 -0.4
1,753,285 - MPMX19_01666 0.87 -1.2
1,754,067 + MPMX19_01667 0.63 +1.5
1,754,067 + MPMX19_01667 0.63 -0.7
1,754,068 - MPMX19_01667 0.63 -2.3
1,754,068 - MPMX19_01667 0.63 +1.1
1,754,068 - MPMX19_01667 0.63 +0.7
1,754,068 - MPMX19_01667 0.63 +0.5
1,754,068 - MPMX19_01667 0.63 -1.3
1,754,141 + MPMX19_01667 0.71 +1.1
1,754,141 + MPMX19_01667 0.71 -0.1
1,754,141 + MPMX19_01667 0.71 -0.7
1,754,141 + MPMX19_01667 0.71 -0.6
1,754,141 + MPMX19_01667 0.71 +0.5
1,754,141 + MPMX19_01667 0.71 -1.9
1,754,141 + MPMX19_01667 0.71 +0.6
1,754,141 + MPMX19_01667 0.71 +0.5
1,754,141 + MPMX19_01667 0.71 -0.7
1,754,141 + MPMX19_01667 0.71 +1.0
1,754,141 + MPMX19_01667 0.71 +0.1
1,754,141 + MPMX19_01667 0.71 +0.8
1,754,141 + MPMX19_01667 0.71 +0.1
1,754,141 + MPMX19_01667 0.71 -2.1
1,754,141 + MPMX19_01667 0.71 -1.6
1,754,142 - MPMX19_01667 0.71 +0.5
1,754,142 - MPMX19_01667 0.71 +1.3
1,754,142 - MPMX19_01667 0.71 -0.0
1,754,142 - MPMX19_01667 0.71 +0.2
1,754,142 - MPMX19_01667 0.71 -0.6
1,754,142 - MPMX19_01667 0.71 +0.4
1,754,142 - MPMX19_01667 0.71 -0.6
1,754,142 - MPMX19_01667 0.71 -0.5
1,754,142 - MPMX19_01667 0.71 -0.0
1,754,142 - MPMX19_01667 0.71 +0.1
1,754,142 - MPMX19_01667 0.71 -0.0
1,754,142 - MPMX19_01667 0.71 -0.3
1,754,142 - MPMX19_01667 0.71 -1.6
1,754,142 - MPMX19_01667 0.71 +0.4
1,754,142 - MPMX19_01667 0.71 -1.0
1,754,142 - MPMX19_01667 0.71 -0.5
1,754,142 - MPMX19_01667 0.71 -0.3
1,754,142 - MPMX19_01667 0.71 -1.3
1,754,171 + MPMX19_01667 0.75 +0.8
1,754,171 + MPMX19_01667 0.75 +1.2
1,754,171 + MPMX19_01667 0.75 +0.2
1,754,171 + MPMX19_01667 0.75 -0.7
1,754,172 - MPMX19_01667 0.75 +0.4
1,754,172 - MPMX19_01667 0.75 -0.7
1,754,172 - MPMX19_01667 0.75 -0.0
1,754,201 + MPMX19_01667 0.78 +0.5
1,754,201 + MPMX19_01667 0.78 +1.4
1,754,201 + MPMX19_01667 0.78 -1.2
1,754,201 + MPMX19_01667 0.78 -0.0
1,754,202 - MPMX19_01667 0.78 -0.5
1,754,202 - MPMX19_01667 0.78 +0.5
1,754,202 - MPMX19_01667 0.78 -0.5
1,754,202 - MPMX19_01667 0.78 -0.6
1,754,225 + MPMX19_01667 0.81 -0.6
1,754,225 + MPMX19_01667 0.81 -0.4
1,754,225 + MPMX19_01667 0.81 -0.4
1,754,225 + MPMX19_01667 0.81 +1.1
1,754,225 + MPMX19_01667 0.81 -0.6
1,754,225 + MPMX19_01667 0.81 +1.1
1,754,225 + MPMX19_01667 0.81 -0.0
1,754,225 + MPMX19_01667 0.81 -0.6
1,754,225 + MPMX19_01667 0.81 -0.5
1,754,225 + MPMX19_01667 0.81 -0.5
1,754,225 + MPMX19_01667 0.81 -0.0
1,754,226 - MPMX19_01667 0.81 -2.0
1,754,226 - MPMX19_01667 0.81 +1.0
1,754,226 - MPMX19_01667 0.81 -1.1
1,754,226 - MPMX19_01667 0.81 -1.1
1,754,226 - MPMX19_01667 0.81 -0.5
1,754,226 - MPMX19_01667 0.81 -0.8
1,754,226 - MPMX19_01667 0.81 -0.3
1,754,226 - MPMX19_01667 0.81 -0.3
1,754,226 - MPMX19_01667 0.81 -0.8
1,754,226 - MPMX19_01667 0.81 -0.6
1,754,226 - MPMX19_01667 0.81 -2.6
1,754,487 + MPMX19_01668 0.13 -1.0
1,754,488 - MPMX19_01668 0.13 +0.5
1,754,559 + MPMX19_01668 0.23 +0.5
1,754,586 + MPMX19_01668 0.27 -0.0
1,754,959 - MPMX19_01668 0.81 +0.5
1,754,964 + MPMX19_01668 0.81 -1.5
1,755,033 - -0.8

Or see this region's nucleotide sequence