Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00992

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00990 and MPMX19_00991 are separated by 66 nucleotidesMPMX19_00991 and MPMX19_00992 are separated by 4 nucleotidesMPMX19_00992 and MPMX19_00993 are separated by 6 nucleotidesMPMX19_00993 and MPMX19_00994 overlap by 59 nucleotides MPMX19_00990: MPMX19_00990 - Elongation factor Ts, at 1,031,469 to 1,032,401 _00990 MPMX19_00991: MPMX19_00991 - Uridylate kinase, at 1,032,468 to 1,033,223 _00991 MPMX19_00992: MPMX19_00992 - Ribosome-recycling factor, at 1,033,228 to 1,033,785 _00992 MPMX19_00993: MPMX19_00993 - Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific), at 1,033,792 to 1,034,532 _00993 MPMX19_00994: MPMX19_00994 - hypothetical protein, at 1,034,474 to 1,035,367 _00994 Position (kb) 1033 1034Strain fitness (log2 ratio) -1 0 1at 1032.422 kb on + strandat 1032.422 kb on + strandat 1032.422 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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1,032,422 + +1.5
1,032,422 + -0.1
1,032,422 + +1.5

Or see this region's nucleotide sequence