Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00988 and MPMX19_00989 are separated by 409 nucleotides MPMX19_00989 and MPMX19_00990 are separated by 149 nucleotides
MPMX19_00988: MPMX19_00988 - hypothetical protein, at 1,029,345 to 1,030,127
_00988
MPMX19_00989: MPMX19_00989 - 30S ribosomal protein S2, at 1,030,537 to 1,031,319
_00989
MPMX19_00990: MPMX19_00990 - Elongation factor Ts, at 1,031,469 to 1,032,401
_00990
Position (kb) 1030
1031
1032 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1029.632 kb on + strand, within MPMX19_00988 at 1029.632 kb on + strand, within MPMX19_00988 at 1029.632 kb on + strand, within MPMX19_00988 at 1029.632 kb on + strand, within MPMX19_00988 at 1029.632 kb on + strand, within MPMX19_00988 at 1029.632 kb on + strand, within MPMX19_00988 at 1029.632 kb on + strand, within MPMX19_00988 at 1029.632 kb on + strand, within MPMX19_00988 at 1029.633 kb on - strand, within MPMX19_00988 at 1029.633 kb on - strand, within MPMX19_00988 at 1029.633 kb on - strand, within MPMX19_00988 at 1029.633 kb on - strand, within MPMX19_00988 at 1029.633 kb on - strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.878 kb on + strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.879 kb on - strand, within MPMX19_00988 at 1029.880 kb on + strand, within MPMX19_00988 at 1029.880 kb on + strand, within MPMX19_00988 at 1029.880 kb on + strand, within MPMX19_00988 at 1029.880 kb on + strand, within MPMX19_00988 at 1029.880 kb on + strand, within MPMX19_00988 at 1029.880 kb on + strand, within MPMX19_00988 at 1029.880 kb on + strand, within MPMX19_00988 at 1029.880 kb on + strand, within MPMX19_00988 at 1029.880 kb on + strand, within MPMX19_00988 at 1029.881 kb on - strand, within MPMX19_00988 at 1029.881 kb on - strand, within MPMX19_00988 at 1029.881 kb on - strand, within MPMX19_00988 at 1029.881 kb on - strand, within MPMX19_00988 at 1029.881 kb on - strand, within MPMX19_00988 at 1029.881 kb on - strand, within MPMX19_00988 at 1029.881 kb on - strand, within MPMX19_00988 at 1029.881 kb on - strand, within MPMX19_00988 at 1029.881 kb on - strand, within MPMX19_00988 at 1029.990 kb on - strand, within MPMX19_00988 at 1029.990 kb on - strand, within MPMX19_00988 at 1029.990 kb on - strand, within MPMX19_00988 at 1029.990 kb on - strand, within MPMX19_00988 at 1029.990 kb on - strand, within MPMX19_00988 at 1030.075 kb on + strand at 1030.075 kb on + strand at 1030.075 kb on + strand at 1030.075 kb on + strand at 1030.075 kb on + strand at 1030.075 kb on + strand at 1030.075 kb on + strand at 1030.075 kb on + strand at 1030.075 kb on + strand at 1030.075 kb on + strand at 1030.075 kb on + strand at 1030.075 kb on + strand at 1030.075 kb on + strand at 1030.075 kb on + strand at 1030.075 kb on + strand at 1030.075 kb on + strand at 1030.075 kb on + strand at 1030.075 kb on + strand at 1030.075 kb on + strand at 1030.075 kb on + strand at 1030.075 kb on + strand at 1030.075 kb on + strand at 1030.076 kb on - strand at 1030.076 kb on - strand at 1030.076 kb on - strand at 1030.076 kb on - strand at 1030.076 kb on - strand at 1030.076 kb on - strand at 1030.076 kb on - strand at 1030.076 kb on - strand at 1030.076 kb on - strand at 1030.076 kb on - strand at 1030.076 kb on - strand at 1030.076 kb on - strand at 1030.076 kb on - strand at 1030.076 kb on - strand at 1030.076 kb on - strand at 1030.076 kb on - strand at 1030.076 kb on - strand at 1030.076 kb on - strand at 1030.076 kb on - strand at 1030.076 kb on - strand at 1030.076 kb on - strand at 1030.166 kb on + strand at 1030.166 kb on + strand at 1030.166 kb on + strand at 1030.166 kb on + strand at 1030.166 kb on + strand at 1030.166 kb on + strand at 1030.166 kb on + strand at 1030.166 kb on + strand at 1030.166 kb on + strand at 1030.166 kb on + strand at 1030.166 kb on + strand at 1030.166 kb on + strand at 1030.166 kb on + strand at 1030.166 kb on + strand at 1030.166 kb on + strand at 1030.166 kb on + strand at 1030.166 kb on + strand at 1030.167 kb on - strand at 1030.167 kb on - strand at 1030.167 kb on - strand at 1030.167 kb on - strand at 1030.167 kb on - strand at 1030.167 kb on - strand at 1030.167 kb on - strand at 1030.167 kb on - strand at 1030.167 kb on - strand at 1030.167 kb on - strand at 1030.167 kb on - strand at 1030.167 kb on - strand at 1030.167 kb on - strand at 1030.167 kb on - strand at 1030.167 kb on - strand at 1030.167 kb on - strand at 1030.167 kb on - strand at 1030.167 kb on - strand at 1030.173 kb on + strand at 1030.173 kb on + strand at 1030.173 kb on + strand at 1030.173 kb on + strand at 1030.173 kb on + strand at 1030.173 kb on + strand at 1030.173 kb on + strand at 1030.173 kb on + strand at 1030.173 kb on + strand at 1030.173 kb on + strand at 1030.173 kb on + strand at 1030.173 kb on + strand at 1030.174 kb on - strand at 1030.174 kb on - strand at 1030.174 kb on - strand at 1030.174 kb on - strand at 1030.174 kb on - strand at 1030.174 kb on - strand at 1030.174 kb on - strand at 1030.174 kb on - strand at 1030.174 kb on - strand at 1030.174 kb on - strand at 1030.174 kb on - strand at 1030.304 kb on + strand at 1030.304 kb on + strand at 1030.304 kb on + strand at 1030.304 kb on + strand at 1030.304 kb on + strand at 1030.304 kb on + strand at 1030.304 kb on + strand at 1030.304 kb on + strand at 1030.304 kb on + strand at 1030.305 kb on - strand at 1030.305 kb on - strand at 1030.305 kb on - strand at 1030.305 kb on - strand at 1030.394 kb on + strand at 1030.394 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 1,029,632 + MPMX19_00988 0.37 +0.2 1,029,632 + MPMX19_00988 0.37 +0.0 1,029,632 + MPMX19_00988 0.37 -1.5 1,029,632 + MPMX19_00988 0.37 -0.3 1,029,632 + MPMX19_00988 0.37 -0.7 1,029,632 + MPMX19_00988 0.37 +0.5 1,029,632 + MPMX19_00988 0.37 -0.4 1,029,632 + MPMX19_00988 0.37 +0.7 1,029,633 - MPMX19_00988 0.37 -1.5 1,029,633 - MPMX19_00988 0.37 -1.0 1,029,633 - MPMX19_00988 0.37 -1.0 1,029,633 - MPMX19_00988 0.37 -0.3 1,029,633 - MPMX19_00988 0.37 -0.5 1,029,878 + MPMX19_00988 0.68 -0.5 1,029,878 + MPMX19_00988 0.68 +0.1 1,029,878 + MPMX19_00988 0.68 +0.6 1,029,878 + MPMX19_00988 0.68 -0.4 1,029,878 + MPMX19_00988 0.68 -1.1 1,029,878 + MPMX19_00988 0.68 +0.3 1,029,878 + MPMX19_00988 0.68 -1.5 1,029,878 + MPMX19_00988 0.68 +1.1 1,029,878 + MPMX19_00988 0.68 -0.5 1,029,878 + MPMX19_00988 0.68 -0.9 1,029,878 + MPMX19_00988 0.68 -0.5 1,029,878 + MPMX19_00988 0.68 -0.9 1,029,878 + MPMX19_00988 0.68 -0.9 1,029,878 + MPMX19_00988 0.68 +0.1 1,029,878 + MPMX19_00988 0.68 -0.5 1,029,878 + MPMX19_00988 0.68 +1.6 1,029,878 + MPMX19_00988 0.68 -1.2 1,029,878 + MPMX19_00988 0.68 -2.3 1,029,878 + MPMX19_00988 0.68 -2.6 1,029,878 + MPMX19_00988 0.68 -0.6 1,029,878 + MPMX19_00988 0.68 -0.7 1,029,878 + MPMX19_00988 0.68 -1.4 1,029,878 + MPMX19_00988 0.68 -1.1 1,029,878 + MPMX19_00988 0.68 -1.1 1,029,878 + MPMX19_00988 0.68 -1.3 1,029,878 + MPMX19_00988 0.68 -1.9 1,029,878 + MPMX19_00988 0.68 +0.5 1,029,878 + MPMX19_00988 0.68 -0.4 1,029,878 + MPMX19_00988 0.68 -0.2 1,029,878 + MPMX19_00988 0.68 +1.3 1,029,878 + MPMX19_00988 0.68 -0.7 1,029,878 + MPMX19_00988 0.68 +0.5 1,029,878 + MPMX19_00988 0.68 -1.0 1,029,878 + MPMX19_00988 0.68 -1.0 1,029,878 + MPMX19_00988 0.68 -0.2 1,029,879 - MPMX19_00988 0.68 +0.1 1,029,879 - MPMX19_00988 0.68 +0.1 1,029,879 - MPMX19_00988 0.68 -2.1 1,029,879 - MPMX19_00988 0.68 -0.8 1,029,879 - MPMX19_00988 0.68 +0.1 1,029,879 - MPMX19_00988 0.68 +1.1 1,029,879 - MPMX19_00988 0.68 -1.8 1,029,879 - MPMX19_00988 0.68 -1.2 1,029,879 - MPMX19_00988 0.68 -0.3 1,029,879 - MPMX19_00988 0.68 +0.1 1,029,879 - MPMX19_00988 0.68 -0.5 1,029,879 - MPMX19_00988 0.68 -1.7 1,029,879 - MPMX19_00988 0.68 +0.5 1,029,879 - MPMX19_00988 0.68 -0.5 1,029,879 - MPMX19_00988 0.68 -0.1 1,029,879 - MPMX19_00988 0.68 -1.6 1,029,879 - MPMX19_00988 0.68 +0.5 1,029,879 - MPMX19_00988 0.68 -1.1 1,029,879 - MPMX19_00988 0.68 -1.2 1,029,879 - MPMX19_00988 0.68 +0.3 1,029,879 - MPMX19_00988 0.68 -0.3 1,029,879 - MPMX19_00988 0.68 -0.7 1,029,879 - MPMX19_00988 0.68 -0.1 1,029,879 - MPMX19_00988 0.68 -0.6 1,029,879 - MPMX19_00988 0.68 +0.1 1,029,879 - MPMX19_00988 0.68 -2.0 1,029,879 - MPMX19_00988 0.68 +0.1 1,029,879 - MPMX19_00988 0.68 +1.1 1,029,879 - MPMX19_00988 0.68 -2.0 1,029,879 - MPMX19_00988 0.68 -0.8 1,029,879 - MPMX19_00988 0.68 +0.4 1,029,879 - MPMX19_00988 0.68 -0.8 1,029,879 - MPMX19_00988 0.68 -0.8 1,029,879 - MPMX19_00988 0.68 -2.3 1,029,879 - MPMX19_00988 0.68 +0.2 1,029,879 - MPMX19_00988 0.68 -2.1 1,029,879 - MPMX19_00988 0.68 -1.1 1,029,879 - MPMX19_00988 0.68 -0.2 1,029,879 - MPMX19_00988 0.68 -0.6 1,029,879 - MPMX19_00988 0.68 +0.8 1,029,880 + MPMX19_00988 0.68 +0.3 1,029,880 + MPMX19_00988 0.68 -0.7 1,029,880 + MPMX19_00988 0.68 -0.0 1,029,880 + MPMX19_00988 0.68 -1.6 1,029,880 + MPMX19_00988 0.68 -0.3 1,029,880 + MPMX19_00988 0.68 +0.3 1,029,880 + MPMX19_00988 0.68 +0.7 1,029,880 + MPMX19_00988 0.68 -3.2 1,029,880 + MPMX19_00988 0.68 +0.3 1,029,881 - MPMX19_00988 0.68 -1.2 1,029,881 - MPMX19_00988 0.68 -0.2 1,029,881 - MPMX19_00988 0.68 +0.4 1,029,881 - MPMX19_00988 0.68 +0.1 1,029,881 - MPMX19_00988 0.68 -1.2 1,029,881 - MPMX19_00988 0.68 -0.3 1,029,881 - MPMX19_00988 0.68 +1.5 1,029,881 - MPMX19_00988 0.68 -1.8 1,029,881 - MPMX19_00988 0.68 +0.1 1,029,990 - MPMX19_00988 0.82 -0.6 1,029,990 - MPMX19_00988 0.82 -1.0 1,029,990 - MPMX19_00988 0.82 -1.9 1,029,990 - MPMX19_00988 0.82 -0.1 1,029,990 - MPMX19_00988 0.82 -2.8 1,030,075 + -0.4 1,030,075 + -1.0 1,030,075 + +1.3 1,030,075 + +0.3 1,030,075 + +0.0 1,030,075 + -0.5 1,030,075 + -1.2 1,030,075 + -1.1 1,030,075 + +0.5 1,030,075 + -0.3 1,030,075 + -1.2 1,030,075 + +0.3 1,030,075 + -0.5 1,030,075 + -0.5 1,030,075 + -0.0 1,030,075 + +0.1 1,030,075 + -1.5 1,030,075 + +0.2 1,030,075 + -0.3 1,030,075 + -1.3 1,030,075 + -0.5 1,030,075 + -0.3 1,030,076 - +0.7 1,030,076 - -0.6 1,030,076 - +0.0 1,030,076 - +0.4 1,030,076 - +0.5 1,030,076 - +0.1 1,030,076 - -1.3 1,030,076 - -2.1 1,030,076 - +0.4 1,030,076 - -0.3 1,030,076 - -1.1 1,030,076 - -1.8 1,030,076 - -0.1 1,030,076 - -1.4 1,030,076 - -0.8 1,030,076 - +0.6 1,030,076 - -0.2 1,030,076 - +0.5 1,030,076 - -0.3 1,030,076 - -1.5 1,030,076 - -0.7 1,030,166 + -0.6 1,030,166 + +0.2 1,030,166 + -0.8 1,030,166 + +0.2 1,030,166 + +0.5 1,030,166 + -1.2 1,030,166 + -0.8 1,030,166 + -0.7 1,030,166 + -2.3 1,030,166 + -0.5 1,030,166 + -1.1 1,030,166 + -0.0 1,030,166 + -0.6 1,030,166 + -0.9 1,030,166 + -0.8 1,030,166 + -0.6 1,030,166 + +0.2 1,030,167 - +1.9 1,030,167 - -0.2 1,030,167 - +0.1 1,030,167 - +0.3 1,030,167 - -1.5 1,030,167 - -0.4 1,030,167 - -0.3 1,030,167 - -0.7 1,030,167 - -0.8 1,030,167 - -1.1 1,030,167 - -2.1 1,030,167 - -1.3 1,030,167 - -0.6 1,030,167 - -0.4 1,030,167 - +0.5 1,030,167 - -0.2 1,030,167 - -0.1 1,030,167 - -0.6 1,030,173 + -0.8 1,030,173 + -0.9 1,030,173 + +0.9 1,030,173 + -0.7 1,030,173 + -0.5 1,030,173 + -0.1 1,030,173 + -0.7 1,030,173 + +0.3 1,030,173 + +0.3 1,030,173 + -1.3 1,030,173 + -1.4 1,030,173 + -0.1 1,030,174 - -1.0 1,030,174 - -0.3 1,030,174 - -0.6 1,030,174 - -0.4 1,030,174 - +0.6 1,030,174 - -1.1 1,030,174 - -0.7 1,030,174 - -0.7 1,030,174 - -0.8 1,030,174 - -0.6 1,030,174 - -1.1 1,030,304 + +1.3 1,030,304 + -0.3 1,030,304 + -1.1 1,030,304 + +0.5 1,030,304 + -2.0 1,030,304 + -2.5 1,030,304 + +0.2 1,030,304 + -0.1 1,030,304 + +0.1 1,030,305 - -1.0 1,030,305 - +0.2 1,030,305 - -0.1 1,030,305 - -0.0 1,030,394 + -0.5 1,030,394 + -1.3
Or see this region's nucleotide sequence