Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00873 and MPMX19_00874 are separated by 195 nucleotides MPMX19_00874 and MPMX19_00875 are separated by 63 nucleotides
MPMX19_00873: MPMX19_00873 - hypothetical protein, at 905,327 to 907,258
_00873
MPMX19_00874: MPMX19_00874 - hypothetical protein, at 907,454 to 907,651
_00874
MPMX19_00875: MPMX19_00875 - hypothetical protein, at 907,715 to 908,668
_00875
Position (kb) 907
908 Strain fitness (log2 ratio) -2
-1
0
1
2 at 906.645 kb on + strand, within MPMX19_00873 at 906.645 kb on + strand, within MPMX19_00873 at 906.645 kb on + strand, within MPMX19_00873 at 906.645 kb on + strand, within MPMX19_00873 at 906.645 kb on + strand, within MPMX19_00873 at 906.645 kb on + strand, within MPMX19_00873 at 906.646 kb on - strand, within MPMX19_00873 at 906.646 kb on - strand, within MPMX19_00873 at 906.646 kb on - strand, within MPMX19_00873 at 906.646 kb on - strand, within MPMX19_00873 at 906.646 kb on - strand, within MPMX19_00873 at 906.646 kb on - strand, within MPMX19_00873 at 906.657 kb on + strand, within MPMX19_00873 at 906.657 kb on + strand, within MPMX19_00873 at 906.658 kb on - strand, within MPMX19_00873 at 906.730 kb on + strand, within MPMX19_00873 at 906.730 kb on + strand, within MPMX19_00873 at 906.730 kb on + strand, within MPMX19_00873 at 906.730 kb on + strand, within MPMX19_00873 at 906.730 kb on + strand, within MPMX19_00873 at 906.730 kb on + strand, within MPMX19_00873 at 906.731 kb on - strand, within MPMX19_00873 at 906.731 kb on - strand, within MPMX19_00873 at 906.731 kb on - strand, within MPMX19_00873 at 906.731 kb on - strand, within MPMX19_00873 at 906.731 kb on - strand, within MPMX19_00873 at 906.731 kb on - strand, within MPMX19_00873 at 906.731 kb on - strand, within MPMX19_00873 at 906.731 kb on - strand, within MPMX19_00873 at 906.731 kb on - strand, within MPMX19_00873 at 906.731 kb on - strand, within MPMX19_00873 at 906.731 kb on - strand, within MPMX19_00873 at 906.731 kb on - strand, within MPMX19_00873 at 906.731 kb on - strand, within MPMX19_00873 at 906.732 kb on + strand, within MPMX19_00873 at 906.732 kb on + strand, within MPMX19_00873 at 906.732 kb on + strand, within MPMX19_00873 at 906.732 kb on + strand, within MPMX19_00873 at 906.732 kb on + strand, within MPMX19_00873 at 906.732 kb on + strand, within MPMX19_00873 at 906.733 kb on - strand, within MPMX19_00873 at 906.733 kb on - strand, within MPMX19_00873 at 906.733 kb on - strand, within MPMX19_00873 at 906.733 kb on - strand, within MPMX19_00873 at 906.733 kb on - strand, within MPMX19_00873 at 906.733 kb on - strand, within MPMX19_00873 at 906.733 kb on - strand, within MPMX19_00873 at 906.733 kb on - strand, within MPMX19_00873 at 906.733 kb on - strand, within MPMX19_00873 at 906.733 kb on - strand, within MPMX19_00873 at 906.733 kb on - strand, within MPMX19_00873 at 906.812 kb on - strand, within MPMX19_00873 at 906.812 kb on - strand, within MPMX19_00873 at 906.813 kb on + strand, within MPMX19_00873 at 906.813 kb on + strand, within MPMX19_00873 at 906.813 kb on + strand, within MPMX19_00873 at 906.813 kb on + strand, within MPMX19_00873 at 906.813 kb on + strand, within MPMX19_00873 at 906.813 kb on + strand, within MPMX19_00873 at 906.813 kb on + strand, within MPMX19_00873 at 906.813 kb on + strand, within MPMX19_00873 at 906.813 kb on + strand, within MPMX19_00873 at 906.813 kb on + strand, within MPMX19_00873 at 906.813 kb on + strand, within MPMX19_00873 at 906.813 kb on + strand, within MPMX19_00873 at 906.814 kb on - strand, within MPMX19_00873 at 906.814 kb on - strand, within MPMX19_00873 at 906.814 kb on - strand, within MPMX19_00873 at 906.814 kb on - strand, within MPMX19_00873 at 906.814 kb on - strand, within MPMX19_00873 at 906.814 kb on - strand, within MPMX19_00873 at 906.814 kb on - strand, within MPMX19_00873 at 906.814 kb on - strand, within MPMX19_00873 at 906.879 kb on + strand, within MPMX19_00873 at 906.879 kb on + strand, within MPMX19_00873 at 906.880 kb on - strand, within MPMX19_00873 at 906.880 kb on - strand, within MPMX19_00873 at 906.921 kb on + strand, within MPMX19_00873 at 906.921 kb on + strand, within MPMX19_00873 at 906.927 kb on + strand, within MPMX19_00873 at 906.927 kb on + strand, within MPMX19_00873 at 906.928 kb on - strand, within MPMX19_00873 at 906.928 kb on - strand, within MPMX19_00873 at 906.990 kb on + strand, within MPMX19_00873 at 906.990 kb on + strand, within MPMX19_00873 at 906.990 kb on + strand, within MPMX19_00873 at 906.990 kb on + strand, within MPMX19_00873 at 906.991 kb on - strand, within MPMX19_00873 at 906.991 kb on - strand, within MPMX19_00873 at 907.065 kb on + strand at 907.065 kb on + strand at 907.065 kb on + strand at 907.065 kb on + strand at 907.065 kb on + strand at 907.065 kb on + strand at 907.065 kb on + strand at 907.065 kb on + strand at 907.065 kb on + strand at 907.065 kb on + strand at 907.065 kb on + strand at 907.065 kb on + strand at 907.065 kb on + strand at 907.066 kb on - strand at 907.066 kb on - strand at 907.066 kb on - strand at 907.066 kb on - strand at 907.066 kb on - strand at 907.066 kb on - strand at 907.066 kb on - strand at 907.066 kb on - strand at 907.066 kb on - strand at 907.066 kb on - strand at 907.066 kb on - strand at 907.066 kb on - strand at 907.066 kb on - strand at 907.107 kb on + strand at 907.107 kb on + strand at 907.107 kb on + strand at 907.108 kb on - strand at 907.108 kb on - strand at 907.108 kb on - strand at 907.113 kb on + strand at 907.113 kb on + strand at 907.113 kb on + strand at 907.113 kb on + strand at 907.114 kb on - strand at 907.114 kb on - strand at 907.314 kb on + strand at 907.314 kb on + strand at 907.315 kb on - strand at 907.319 kb on - strand at 907.716 kb on + strand at 907.717 kb on - strand at 907.717 kb on - strand at 907.788 kb on + strand at 907.788 kb on + strand at 907.788 kb on + strand at 907.788 kb on + strand at 907.788 kb on + strand at 907.788 kb on + strand at 907.788 kb on + strand at 907.788 kb on + strand at 907.788 kb on + strand at 907.788 kb on + strand at 907.788 kb on + strand at 907.788 kb on + strand at 907.788 kb on + strand at 907.788 kb on + strand at 907.788 kb on + strand at 907.788 kb on + strand at 907.788 kb on + strand at 907.788 kb on + strand at 907.788 kb on + strand at 907.788 kb on + strand at 907.789 kb on - strand at 907.789 kb on - strand at 907.789 kb on - strand at 907.789 kb on - strand at 907.789 kb on - strand at 907.789 kb on - strand at 907.789 kb on - strand at 907.789 kb on - strand at 907.789 kb on - strand at 907.789 kb on - strand at 907.789 kb on - strand at 907.789 kb on - strand at 907.789 kb on - strand at 907.789 kb on - strand at 907.800 kb on + strand at 907.800 kb on + strand at 907.800 kb on + strand at 907.800 kb on + strand at 907.800 kb on + strand at 907.800 kb on + strand at 907.800 kb on + strand at 907.800 kb on + strand at 907.800 kb on + strand at 907.801 kb on - strand at 907.801 kb on - strand at 907.801 kb on - strand at 907.801 kb on - strand at 907.801 kb on - strand at 907.801 kb on - strand at 907.801 kb on - strand at 907.801 kb on - strand at 907.801 kb on - strand at 907.801 kb on - strand at 907.801 kb on - strand at 907.801 kb on - strand at 908.445 kb on + strand, within MPMX19_00875 at 908.445 kb on + strand, within MPMX19_00875 at 908.445 kb on + strand, within MPMX19_00875 at 908.445 kb on + strand, within MPMX19_00875 at 908.445 kb on + strand, within MPMX19_00875 at 908.445 kb on + strand, within MPMX19_00875 at 908.446 kb on - strand, within MPMX19_00875 at 908.446 kb on - strand, within MPMX19_00875 at 908.446 kb on - strand, within MPMX19_00875 at 908.446 kb on - strand, within MPMX19_00875 at 908.446 kb on - strand, within MPMX19_00875 at 908.446 kb on - strand, within MPMX19_00875 at 908.446 kb on - strand, within MPMX19_00875
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 906,645 + MPMX19_00873 0.68 +0.4 906,645 + MPMX19_00873 0.68 -0.3 906,645 + MPMX19_00873 0.68 -0.2 906,645 + MPMX19_00873 0.68 +1.2 906,645 + MPMX19_00873 0.68 +0.7 906,645 + MPMX19_00873 0.68 +0.1 906,646 - MPMX19_00873 0.68 -0.2 906,646 - MPMX19_00873 0.68 -1.1 906,646 - MPMX19_00873 0.68 +1.1 906,646 - MPMX19_00873 0.68 -1.3 906,646 - MPMX19_00873 0.68 +0.6 906,646 - MPMX19_00873 0.68 -0.7 906,657 + MPMX19_00873 0.69 -0.7 906,657 + MPMX19_00873 0.69 -1.2 906,658 - MPMX19_00873 0.69 +0.0 906,730 + MPMX19_00873 0.73 -1.3 906,730 + MPMX19_00873 0.73 -0.4 906,730 + MPMX19_00873 0.73 +1.2 906,730 + MPMX19_00873 0.73 -0.5 906,730 + MPMX19_00873 0.73 -0.1 906,730 + MPMX19_00873 0.73 -0.4 906,731 - MPMX19_00873 0.73 +0.7 906,731 - MPMX19_00873 0.73 -0.6 906,731 - MPMX19_00873 0.73 +0.5 906,731 - MPMX19_00873 0.73 +0.7 906,731 - MPMX19_00873 0.73 -1.0 906,731 - MPMX19_00873 0.73 -1.7 906,731 - MPMX19_00873 0.73 +1.2 906,731 - MPMX19_00873 0.73 +1.1 906,731 - MPMX19_00873 0.73 +0.5 906,731 - MPMX19_00873 0.73 -0.3 906,731 - MPMX19_00873 0.73 -0.0 906,731 - MPMX19_00873 0.73 +0.5 906,731 - MPMX19_00873 0.73 -1.8 906,732 + MPMX19_00873 0.73 -0.5 906,732 + MPMX19_00873 0.73 -0.6 906,732 + MPMX19_00873 0.73 +0.2 906,732 + MPMX19_00873 0.73 +0.2 906,732 + MPMX19_00873 0.73 -0.1 906,732 + MPMX19_00873 0.73 -0.5 906,733 - MPMX19_00873 0.73 -0.5 906,733 - MPMX19_00873 0.73 +0.7 906,733 - MPMX19_00873 0.73 -0.8 906,733 - MPMX19_00873 0.73 -0.4 906,733 - MPMX19_00873 0.73 -0.4 906,733 - MPMX19_00873 0.73 -0.4 906,733 - MPMX19_00873 0.73 -0.1 906,733 - MPMX19_00873 0.73 -2.2 906,733 - MPMX19_00873 0.73 -0.4 906,733 - MPMX19_00873 0.73 +0.7 906,733 - MPMX19_00873 0.73 -1.7 906,812 - MPMX19_00873 0.77 -0.5 906,812 - MPMX19_00873 0.77 -0.9 906,813 + MPMX19_00873 0.77 -0.5 906,813 + MPMX19_00873 0.77 -0.6 906,813 + MPMX19_00873 0.77 -0.3 906,813 + MPMX19_00873 0.77 -0.8 906,813 + MPMX19_00873 0.77 -0.8 906,813 + MPMX19_00873 0.77 +1.5 906,813 + MPMX19_00873 0.77 +0.5 906,813 + MPMX19_00873 0.77 +0.1 906,813 + MPMX19_00873 0.77 -1.4 906,813 + MPMX19_00873 0.77 -0.4 906,813 + MPMX19_00873 0.77 -1.1 906,813 + MPMX19_00873 0.77 +0.3 906,814 - MPMX19_00873 0.77 -0.3 906,814 - MPMX19_00873 0.77 +0.5 906,814 - MPMX19_00873 0.77 +1.2 906,814 - MPMX19_00873 0.77 -0.6 906,814 - MPMX19_00873 0.77 +0.6 906,814 - MPMX19_00873 0.77 -1.2 906,814 - MPMX19_00873 0.77 +1.2 906,814 - MPMX19_00873 0.77 -0.5 906,879 + MPMX19_00873 0.80 -1.3 906,879 + MPMX19_00873 0.80 -0.5 906,880 - MPMX19_00873 0.80 -1.1 906,880 - MPMX19_00873 0.80 -0.5 906,921 + MPMX19_00873 0.83 +0.0 906,921 + MPMX19_00873 0.83 -0.5 906,927 + MPMX19_00873 0.83 -0.5 906,927 + MPMX19_00873 0.83 +0.5 906,928 - MPMX19_00873 0.83 -2.2 906,928 - MPMX19_00873 0.83 +0.9 906,990 + MPMX19_00873 0.86 -1.4 906,990 + MPMX19_00873 0.86 -1.8 906,990 + MPMX19_00873 0.86 +0.2 906,990 + MPMX19_00873 0.86 -0.2 906,991 - MPMX19_00873 0.86 +0.4 906,991 - MPMX19_00873 0.86 -0.6 907,065 + -0.5 907,065 + -1.8 907,065 + +0.1 907,065 + +1.2 907,065 + -0.9 907,065 + +0.5 907,065 + -0.1 907,065 + -0.2 907,065 + +0.9 907,065 + -1.6 907,065 + +0.8 907,065 + -0.6 907,065 + -1.7 907,066 - -0.8 907,066 - -0.8 907,066 - +0.9 907,066 - -1.5 907,066 - +1.0 907,066 - -0.5 907,066 - -1.9 907,066 - -0.6 907,066 - -0.6 907,066 - -0.3 907,066 - -0.6 907,066 - +0.5 907,066 - -0.4 907,107 + -0.1 907,107 + -0.8 907,107 + -0.5 907,108 - -1.7 907,108 - -0.5 907,108 - -0.3 907,113 + +0.2 907,113 + +0.8 907,113 + +0.0 907,113 + -0.8 907,114 - -0.5 907,114 - +0.9 907,314 + -0.1 907,314 + -0.5 907,315 - +0.2 907,319 - +0.6 907,716 + -0.2 907,717 - -0.5 907,717 - +1.0 907,788 + -0.4 907,788 + -0.1 907,788 + -0.2 907,788 + +0.3 907,788 + -2.6 907,788 + +0.4 907,788 + -0.0 907,788 + +0.5 907,788 + -0.5 907,788 + +0.6 907,788 + +0.5 907,788 + -0.5 907,788 + +0.7 907,788 + -0.1 907,788 + -1.2 907,788 + -1.6 907,788 + +1.2 907,788 + -1.1 907,788 + -2.0 907,788 + -0.3 907,789 - +0.7 907,789 - +1.6 907,789 - -1.5 907,789 - +0.3 907,789 - +0.1 907,789 - -0.0 907,789 - -2.7 907,789 - -0.6 907,789 - +1.0 907,789 - -1.7 907,789 - -0.8 907,789 - -1.2 907,789 - +0.0 907,789 - -0.4 907,800 + -0.4 907,800 + -0.2 907,800 + -0.8 907,800 + -0.1 907,800 + +0.5 907,800 + +0.0 907,800 + -0.1 907,800 + +0.2 907,800 + +0.5 907,801 - +1.3 907,801 - -0.8 907,801 - +0.1 907,801 - -1.1 907,801 - +0.5 907,801 - -0.5 907,801 - +0.1 907,801 - -1.1 907,801 - -1.1 907,801 - -1.4 907,801 - -1.2 907,801 - +0.0 908,445 + MPMX19_00875 0.77 +0.8 908,445 + MPMX19_00875 0.77 +0.0 908,445 + MPMX19_00875 0.77 -0.5 908,445 + MPMX19_00875 0.77 +0.9 908,445 + MPMX19_00875 0.77 +1.5 908,445 + MPMX19_00875 0.77 +0.1 908,446 - MPMX19_00875 0.77 -0.7 908,446 - MPMX19_00875 0.77 -0.4 908,446 - MPMX19_00875 0.77 +0.5 908,446 - MPMX19_00875 0.77 -1.3 908,446 - MPMX19_00875 0.77 -1.4 908,446 - MPMX19_00875 0.77 -1.2 908,446 - MPMX19_00875 0.77 +1.9
Or see this region's nucleotide sequence