Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00428 and MPMX19_00429 are separated by 118 nucleotides MPMX19_00429 and MPMX19_00430 are separated by 111 nucleotides MPMX19_00430 and MPMX19_00431 are separated by 12 nucleotides MPMX19_00431 and MPMX19_00432 are separated by 313 nucleotides MPMX19_00432 and MPMX19_00433 are separated by 214 nucleotides
MPMX19_00428: MPMX19_00428 - hypothetical protein, at 429,281 to 430,783
_00428
MPMX19_00429: MPMX19_00429 - hypothetical protein, at 430,902 to 431,135
_00429
MPMX19_00430: MPMX19_00430 - hypothetical protein, at 431,247 to 431,609
_00430
MPMX19_00431: MPMX19_00431 - hypothetical protein, at 431,622 to 432,335
_00431
MPMX19_00432: MPMX19_00432 - hypothetical protein, at 432,649 to 432,861
_00432
MPMX19_00433: MPMX19_00433 - Lysine/ornithine decarboxylase, at 433,076 to 434,212
_00433
Position (kb) 431
432
433 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.781 kb on + strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.782 kb on - strand at 430.859 kb on + strand at 430.861 kb on + strand at 430.862 kb on - strand at 430.869 kb on + strand at 430.957 kb on + strand, within MPMX19_00429 at 430.957 kb on + strand, within MPMX19_00429 at 430.957 kb on + strand, within MPMX19_00429 at 430.957 kb on + strand, within MPMX19_00429 at 430.957 kb on + strand, within MPMX19_00429 at 430.958 kb on - strand, within MPMX19_00429 at 430.958 kb on - strand, within MPMX19_00429 at 430.958 kb on - strand, within MPMX19_00429 at 430.958 kb on - strand, within MPMX19_00429 at 430.958 kb on - strand, within MPMX19_00429 at 430.958 kb on - strand, within MPMX19_00429 at 430.958 kb on - strand, within MPMX19_00429 at 431.217 kb on + strand at 431.217 kb on + strand at 431.217 kb on + strand at 431.217 kb on + strand at 431.217 kb on + strand at 431.217 kb on + strand at 431.217 kb on + strand at 431.217 kb on + strand at 431.217 kb on + strand at 431.218 kb on + strand at 431.218 kb on - strand at 431.218 kb on - strand at 431.218 kb on - strand at 431.218 kb on - strand at 431.218 kb on - strand at 431.218 kb on - strand at 431.218 kb on - strand at 431.235 kb on + strand at 431.235 kb on + strand at 431.235 kb on + strand at 431.235 kb on + strand at 431.266 kb on + strand at 431.266 kb on + strand at 431.266 kb on + strand at 431.266 kb on + strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.267 kb on - strand at 431.404 kb on + strand, within MPMX19_00430 at 431.404 kb on + strand, within MPMX19_00430 at 431.404 kb on + strand, within MPMX19_00430 at 431.404 kb on + strand, within MPMX19_00430 at 431.405 kb on - strand, within MPMX19_00430 at 431.405 kb on - strand, within MPMX19_00430 at 431.405 kb on - strand, within MPMX19_00430 at 431.405 kb on - strand, within MPMX19_00430 at 431.405 kb on - strand, within MPMX19_00430 at 431.405 kb on - strand, within MPMX19_00430 at 431.405 kb on - strand, within MPMX19_00430 at 431.405 kb on - strand, within MPMX19_00430 at 431.419 kb on + strand, within MPMX19_00430 at 431.419 kb on + strand, within MPMX19_00430 at 431.419 kb on + strand, within MPMX19_00430 at 431.419 kb on + strand, within MPMX19_00430 at 431.419 kb on + strand, within MPMX19_00430 at 431.420 kb on - strand, within MPMX19_00430 at 431.420 kb on - strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.488 kb on + strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.489 kb on - strand, within MPMX19_00430 at 431.675 kb on - strand at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.722 kb on + strand, within MPMX19_00431 at 431.723 kb on - strand, within MPMX19_00431 at 431.723 kb on - strand, within MPMX19_00431 at 431.723 kb on - strand, within MPMX19_00431 at 431.723 kb on - strand, within MPMX19_00431 at 431.723 kb on - strand, within MPMX19_00431 at 431.723 kb on - strand, within MPMX19_00431 at 431.723 kb on - strand, within MPMX19_00431 at 431.723 kb on - strand, within MPMX19_00431 at 431.729 kb on + strand, within MPMX19_00431 at 431.729 kb on + strand, within MPMX19_00431 at 431.729 kb on + strand, within MPMX19_00431 at 431.729 kb on + strand, within MPMX19_00431 at 431.730 kb on - strand, within MPMX19_00431 at 431.730 kb on - strand, within MPMX19_00431 at 431.842 kb on + strand, within MPMX19_00431 at 431.842 kb on + strand, within MPMX19_00431 at 431.843 kb on - strand, within MPMX19_00431 at 431.843 kb on - strand, within MPMX19_00431 at 431.843 kb on - strand, within MPMX19_00431 at 431.843 kb on - strand, within MPMX19_00431 at 431.843 kb on - strand, within MPMX19_00431 at 432.136 kb on + strand, within MPMX19_00431 at 432.136 kb on + strand, within MPMX19_00431 at 432.136 kb on + strand, within MPMX19_00431 at 432.137 kb on - strand, within MPMX19_00431 at 432.137 kb on - strand, within MPMX19_00431 at 432.137 kb on - strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.142 kb on + strand, within MPMX19_00431 at 432.143 kb on - strand, within MPMX19_00431 at 432.143 kb on - strand, within MPMX19_00431 at 432.143 kb on - strand, within MPMX19_00431 at 432.143 kb on - strand, within MPMX19_00431 at 432.143 kb on - strand, within MPMX19_00431 at 432.143 kb on - strand, within MPMX19_00431 at 432.143 kb on - strand, within MPMX19_00431 at 432.143 kb on - strand, within MPMX19_00431 at 432.143 kb on - strand, within MPMX19_00431 at 432.143 kb on - strand, within MPMX19_00431 at 432.143 kb on - strand, within MPMX19_00431 at 432.143 kb on - strand, within MPMX19_00431 at 432.143 kb on - strand, within MPMX19_00431 at 432.380 kb on + strand at 432.381 kb on - strand at 432.381 kb on - strand at 432.459 kb on + strand at 432.459 kb on + strand at 432.570 kb on + strand at 432.570 kb on + strand at 432.570 kb on + strand at 432.571 kb on - strand at 432.571 kb on - strand at 432.571 kb on - strand at 432.571 kb on - strand at 432.571 kb on - strand at 432.571 kb on - strand at 432.571 kb on - strand at 432.574 kb on + strand at 432.574 kb on + strand at 432.574 kb on + strand at 432.574 kb on + strand at 432.574 kb on + strand at 432.574 kb on + strand at 432.575 kb on - strand at 432.575 kb on - strand at 432.575 kb on - strand at 432.575 kb on - strand at 432.575 kb on - strand at 432.575 kb on - strand at 432.575 kb on - strand at 432.575 kb on - strand at 432.575 kb on - strand at 432.577 kb on - strand at 432.577 kb on - strand at 432.776 kb on - strand, within MPMX19_00432 at 432.789 kb on + strand, within MPMX19_00432 at 432.789 kb on + strand, within MPMX19_00432 at 432.789 kb on + strand, within MPMX19_00432 at 432.789 kb on + strand, within MPMX19_00432 at 432.789 kb on + strand, within MPMX19_00432 at 432.789 kb on + strand, within MPMX19_00432 at 432.789 kb on + strand, within MPMX19_00432 at 432.789 kb on + strand, within MPMX19_00432 at 432.789 kb on + strand, within MPMX19_00432 at 432.789 kb on + strand, within MPMX19_00432 at 432.789 kb on + strand, within MPMX19_00432 at 432.790 kb on - strand, within MPMX19_00432 at 432.790 kb on - strand, within MPMX19_00432 at 432.790 kb on - strand, within MPMX19_00432 at 432.790 kb on - strand, within MPMX19_00432 at 432.790 kb on - strand, within MPMX19_00432 at 432.790 kb on - strand, within MPMX19_00432 at 432.790 kb on - strand, within MPMX19_00432 at 432.870 kb on - strand at 432.939 kb on + strand at 432.939 kb on + strand at 432.939 kb on + strand at 432.940 kb on - strand at 432.940 kb on - strand at 432.940 kb on - strand at 433.086 kb on + strand at 433.086 kb on + strand at 433.086 kb on + strand at 433.086 kb on + strand at 433.086 kb on + strand at 433.087 kb on - strand at 433.087 kb on - strand at 433.128 kb on + strand at 433.128 kb on + strand at 433.129 kb on - strand at 433.140 kb on + strand at 433.140 kb on + strand at 433.141 kb on - strand at 433.201 kb on - strand, within MPMX19_00433 at 433.201 kb on - strand, within MPMX19_00433 at 433.201 kb on - strand, within MPMX19_00433 at 433.215 kb on + strand, within MPMX19_00433 at 433.215 kb on + strand, within MPMX19_00433 at 433.216 kb on - strand, within MPMX19_00433 at 433.216 kb on - strand, within MPMX19_00433 at 433.216 kb on - strand, within MPMX19_00433 at 433.216 kb on - strand, within MPMX19_00433
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 430,781 + -0.4 430,781 + -0.2 430,781 + -2.4 430,781 + -0.3 430,781 + -0.1 430,781 + -0.2 430,781 + -0.4 430,781 + -0.0 430,781 + -0.6 430,781 + -0.8 430,781 + +0.1 430,781 + +1.0 430,782 - -2.8 430,782 - +1.6 430,782 - +0.3 430,782 - -1.0 430,782 - +1.7 430,782 - -0.3 430,782 - +0.8 430,782 - +0.7 430,782 - +2.0 430,782 - -0.4 430,859 + -0.0 430,861 + -0.5 430,862 - -0.7 430,869 + +0.3 430,957 + MPMX19_00429 0.24 -0.9 430,957 + MPMX19_00429 0.24 +0.2 430,957 + MPMX19_00429 0.24 -0.4 430,957 + MPMX19_00429 0.24 -0.4 430,957 + MPMX19_00429 0.24 -1.0 430,958 - MPMX19_00429 0.24 -1.3 430,958 - MPMX19_00429 0.24 -0.8 430,958 - MPMX19_00429 0.24 -0.0 430,958 - MPMX19_00429 0.24 -0.6 430,958 - MPMX19_00429 0.24 -0.1 430,958 - MPMX19_00429 0.24 -2.1 430,958 - MPMX19_00429 0.24 +0.5 431,217 + -0.9 431,217 + -0.1 431,217 + +0.2 431,217 + +0.4 431,217 + -1.6 431,217 + +0.1 431,217 + +0.1 431,217 + -0.3 431,217 + -0.3 431,218 + -1.0 431,218 - -1.1 431,218 - -0.2 431,218 - -1.0 431,218 - -0.0 431,218 - -1.0 431,218 - -0.9 431,218 - -1.9 431,235 + -0.5 431,235 + -0.6 431,235 + -2.3 431,235 + -0.3 431,266 + -0.5 431,266 + -2.2 431,266 + +1.5 431,266 + +0.5 431,267 - -0.9 431,267 - -0.5 431,267 - -0.2 431,267 - -0.6 431,267 - -0.2 431,267 - +0.3 431,267 - -1.3 431,267 - -1.6 431,267 - -2.4 431,267 - -2.0 431,267 - -1.9 431,404 + MPMX19_00430 0.43 +1.1 431,404 + MPMX19_00430 0.43 +0.1 431,404 + MPMX19_00430 0.43 -0.0 431,404 + MPMX19_00430 0.43 +0.5 431,405 - MPMX19_00430 0.44 -0.4 431,405 - MPMX19_00430 0.44 +0.8 431,405 - MPMX19_00430 0.44 -0.2 431,405 - MPMX19_00430 0.44 -0.1 431,405 - MPMX19_00430 0.44 -1.0 431,405 - MPMX19_00430 0.44 -3.3 431,405 - MPMX19_00430 0.44 -0.1 431,405 - MPMX19_00430 0.44 -2.6 431,419 + MPMX19_00430 0.47 +0.2 431,419 + MPMX19_00430 0.47 -0.9 431,419 + MPMX19_00430 0.47 +1.1 431,419 + MPMX19_00430 0.47 +0.5 431,419 + MPMX19_00430 0.47 -1.6 431,420 - MPMX19_00430 0.48 +0.3 431,420 - MPMX19_00430 0.48 -0.8 431,488 + MPMX19_00430 0.66 -1.0 431,488 + MPMX19_00430 0.66 -1.8 431,488 + MPMX19_00430 0.66 -0.2 431,488 + MPMX19_00430 0.66 -1.8 431,488 + MPMX19_00430 0.66 -1.5 431,488 + MPMX19_00430 0.66 +0.4 431,488 + MPMX19_00430 0.66 -0.7 431,488 + MPMX19_00430 0.66 -0.2 431,488 + MPMX19_00430 0.66 +0.9 431,488 + MPMX19_00430 0.66 -0.4 431,488 + MPMX19_00430 0.66 -1.5 431,488 + MPMX19_00430 0.66 +0.7 431,489 - MPMX19_00430 0.67 -0.9 431,489 - MPMX19_00430 0.67 -1.5 431,489 - MPMX19_00430 0.67 +0.7 431,489 - MPMX19_00430 0.67 +0.5 431,489 - MPMX19_00430 0.67 -0.1 431,489 - MPMX19_00430 0.67 -1.6 431,489 - MPMX19_00430 0.67 -1.3 431,489 - MPMX19_00430 0.67 -0.3 431,489 - MPMX19_00430 0.67 -1.5 431,489 - MPMX19_00430 0.67 -1.0 431,489 - MPMX19_00430 0.67 -0.5 431,675 - -1.1 431,722 + MPMX19_00431 0.14 -0.6 431,722 + MPMX19_00431 0.14 -1.0 431,722 + MPMX19_00431 0.14 -2.1 431,722 + MPMX19_00431 0.14 -1.0 431,722 + MPMX19_00431 0.14 -1.1 431,722 + MPMX19_00431 0.14 -1.3 431,722 + MPMX19_00431 0.14 -2.5 431,722 + MPMX19_00431 0.14 -0.4 431,722 + MPMX19_00431 0.14 -0.8 431,722 + MPMX19_00431 0.14 -0.0 431,723 - MPMX19_00431 0.14 -0.7 431,723 - MPMX19_00431 0.14 -0.4 431,723 - MPMX19_00431 0.14 -0.2 431,723 - MPMX19_00431 0.14 -0.1 431,723 - MPMX19_00431 0.14 -0.7 431,723 - MPMX19_00431 0.14 -0.9 431,723 - MPMX19_00431 0.14 -0.3 431,723 - MPMX19_00431 0.14 -0.3 431,729 + MPMX19_00431 0.15 -1.6 431,729 + MPMX19_00431 0.15 +1.0 431,729 + MPMX19_00431 0.15 -0.3 431,729 + MPMX19_00431 0.15 -1.6 431,730 - MPMX19_00431 0.15 +0.6 431,730 - MPMX19_00431 0.15 +0.6 431,842 + MPMX19_00431 0.31 -0.7 431,842 + MPMX19_00431 0.31 -2.0 431,843 - MPMX19_00431 0.31 -0.2 431,843 - MPMX19_00431 0.31 -0.8 431,843 - MPMX19_00431 0.31 +0.9 431,843 - MPMX19_00431 0.31 -1.8 431,843 - MPMX19_00431 0.31 -0.3 432,136 + MPMX19_00431 0.72 +1.1 432,136 + MPMX19_00431 0.72 -2.0 432,136 + MPMX19_00431 0.72 -0.7 432,137 - MPMX19_00431 0.72 -0.4 432,137 - MPMX19_00431 0.72 +0.9 432,137 - MPMX19_00431 0.72 -0.8 432,142 + MPMX19_00431 0.73 +0.6 432,142 + MPMX19_00431 0.73 -0.3 432,142 + MPMX19_00431 0.73 -1.0 432,142 + MPMX19_00431 0.73 -1.2 432,142 + MPMX19_00431 0.73 -1.0 432,142 + MPMX19_00431 0.73 +0.6 432,142 + MPMX19_00431 0.73 -0.0 432,142 + MPMX19_00431 0.73 -0.8 432,142 + MPMX19_00431 0.73 +0.4 432,142 + MPMX19_00431 0.73 -1.4 432,142 + MPMX19_00431 0.73 -1.3 432,142 + MPMX19_00431 0.73 +0.4 432,142 + MPMX19_00431 0.73 -1.0 432,142 + MPMX19_00431 0.73 +1.0 432,142 + MPMX19_00431 0.73 -1.0 432,142 + MPMX19_00431 0.73 -1.0 432,142 + MPMX19_00431 0.73 -1.9 432,142 + MPMX19_00431 0.73 +0.2 432,143 - MPMX19_00431 0.73 -0.9 432,143 - MPMX19_00431 0.73 -1.8 432,143 - MPMX19_00431 0.73 -0.6 432,143 - MPMX19_00431 0.73 -0.8 432,143 - MPMX19_00431 0.73 -1.0 432,143 - MPMX19_00431 0.73 -1.6 432,143 - MPMX19_00431 0.73 -0.4 432,143 - MPMX19_00431 0.73 +0.6 432,143 - MPMX19_00431 0.73 +1.0 432,143 - MPMX19_00431 0.73 +0.4 432,143 - MPMX19_00431 0.73 +1.9 432,143 - MPMX19_00431 0.73 -0.4 432,143 - MPMX19_00431 0.73 +0.5 432,380 + +0.0 432,381 - -0.4 432,381 - -0.5 432,459 + +0.9 432,459 + +1.0 432,570 + -0.0 432,570 + -0.0 432,570 + -2.7 432,571 - -0.4 432,571 - +0.2 432,571 - +0.3 432,571 - -0.0 432,571 - -0.7 432,571 - -1.1 432,571 - -0.6 432,574 + +0.6 432,574 + -0.9 432,574 + -1.3 432,574 + -0.6 432,574 + -0.4 432,574 + -1.6 432,575 - -0.0 432,575 - -0.2 432,575 - -2.7 432,575 - +0.1 432,575 - -1.0 432,575 - +0.2 432,575 - -0.4 432,575 - -1.3 432,575 - -0.4 432,577 - -0.6 432,577 - -0.2 432,776 - MPMX19_00432 0.60 -1.3 432,789 + MPMX19_00432 0.66 +1.3 432,789 + MPMX19_00432 0.66 +0.4 432,789 + MPMX19_00432 0.66 -0.8 432,789 + MPMX19_00432 0.66 -1.0 432,789 + MPMX19_00432 0.66 -0.3 432,789 + MPMX19_00432 0.66 -0.6 432,789 + MPMX19_00432 0.66 -0.2 432,789 + MPMX19_00432 0.66 -0.0 432,789 + MPMX19_00432 0.66 -0.0 432,789 + MPMX19_00432 0.66 +0.6 432,789 + MPMX19_00432 0.66 -0.7 432,790 - MPMX19_00432 0.66 -0.8 432,790 - MPMX19_00432 0.66 -0.8 432,790 - MPMX19_00432 0.66 -0.1 432,790 - MPMX19_00432 0.66 -1.6 432,790 - MPMX19_00432 0.66 -1.3 432,790 - MPMX19_00432 0.66 -1.9 432,790 - MPMX19_00432 0.66 +0.1 432,870 - -0.4 432,939 + -0.3 432,939 + -0.9 432,939 + -2.0 432,940 - -1.5 432,940 - -0.6 432,940 - -0.8 433,086 + +0.6 433,086 + +0.9 433,086 + -0.6 433,086 + +0.3 433,086 + +0.2 433,087 - +0.1 433,087 - +0.3 433,128 + +0.3 433,128 + -0.8 433,129 - -0.3 433,140 + +0.3 433,140 + +0.0 433,141 - +0.5 433,201 - MPMX19_00433 0.11 -1.6 433,201 - MPMX19_00433 0.11 +0.9 433,201 - MPMX19_00433 0.11 +0.4 433,215 + MPMX19_00433 0.12 -1.4 433,215 + MPMX19_00433 0.12 +1.1 433,216 - MPMX19_00433 0.12 -0.5 433,216 - MPMX19_00433 0.12 -0.8 433,216 - MPMX19_00433 0.12 +0.8 433,216 - MPMX19_00433 0.12 -1.1
Or see this region's nucleotide sequence