Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS06000 and HMPREF1181_RS06005 are separated by 22 nucleotides HMPREF1181_RS06005 and HMPREF1181_RS06010 are separated by 141 nucleotides
HMPREF1181_RS06000: HMPREF1181_RS06000 - GH92 family glycosyl hydrolase, at 533,800 to 536,091
_RS06000
HMPREF1181_RS06005: HMPREF1181_RS06005 - glycoside hydrolase family 130 protein, at 536,114 to 537,097
_RS06005
HMPREF1181_RS06010: HMPREF1181_RS06010 - MFS transporter, at 537,239 to 538,558
_RS06010
Position (kb) 536
537
538 Strain fitness (log2 ratio) -2
-1
0
1 at 535.172 kb on - strand, within HMPREF1181_RS06000 at 535.262 kb on - strand, within HMPREF1181_RS06000 at 535.465 kb on + strand, within HMPREF1181_RS06000 at 535.481 kb on + strand, within HMPREF1181_RS06000 at 535.482 kb on - strand, within HMPREF1181_RS06000 at 535.587 kb on + strand, within HMPREF1181_RS06000 at 535.588 kb on - strand, within HMPREF1181_RS06000 at 535.663 kb on - strand, within HMPREF1181_RS06000 at 535.686 kb on - strand, within HMPREF1181_RS06000 at 535.686 kb on - strand, within HMPREF1181_RS06000 at 535.737 kb on - strand, within HMPREF1181_RS06000 at 535.886 kb on + strand at 535.887 kb on - strand at 535.977 kb on + strand at 536.065 kb on + strand at 536.129 kb on - strand at 536.202 kb on + strand at 536.203 kb on - strand at 536.255 kb on + strand, within HMPREF1181_RS06005 at 536.255 kb on + strand, within HMPREF1181_RS06005 at 536.260 kb on + strand, within HMPREF1181_RS06005 at 536.380 kb on - strand, within HMPREF1181_RS06005 at 536.484 kb on - strand, within HMPREF1181_RS06005 at 536.576 kb on - strand, within HMPREF1181_RS06005 at 536.576 kb on - strand, within HMPREF1181_RS06005 at 536.662 kb on + strand, within HMPREF1181_RS06005 at 536.704 kb on + strand, within HMPREF1181_RS06005 at 536.754 kb on + strand, within HMPREF1181_RS06005 at 536.797 kb on - strand, within HMPREF1181_RS06005 at 536.908 kb on + strand, within HMPREF1181_RS06005 at 537.036 kb on - strand at 537.085 kb on + strand at 537.092 kb on - strand at 537.112 kb on - strand at 537.141 kb on + strand at 537.142 kb on - strand at 537.145 kb on + strand at 537.148 kb on - strand at 537.150 kb on - strand at 537.240 kb on + strand at 537.260 kb on + strand at 537.274 kb on - strand at 537.278 kb on - strand at 537.295 kb on + strand at 537.458 kb on + strand, within HMPREF1181_RS06010 at 537.561 kb on + strand, within HMPREF1181_RS06010 at 537.562 kb on - strand, within HMPREF1181_RS06010 at 537.564 kb on - strand, within HMPREF1181_RS06010 at 537.564 kb on - strand, within HMPREF1181_RS06010 at 537.578 kb on - strand, within HMPREF1181_RS06010 at 537.578 kb on - strand, within HMPREF1181_RS06010 at 537.580 kb on - strand, within HMPREF1181_RS06010 at 537.651 kb on + strand, within HMPREF1181_RS06010 at 537.651 kb on + strand, within HMPREF1181_RS06010 at 537.706 kb on - strand, within HMPREF1181_RS06010 at 537.709 kb on - strand, within HMPREF1181_RS06010 at 537.716 kb on + strand, within HMPREF1181_RS06010 at 537.716 kb on + strand, within HMPREF1181_RS06010 at 537.830 kb on - strand, within HMPREF1181_RS06010 at 537.831 kb on + strand, within HMPREF1181_RS06010 at 537.831 kb on + strand, within HMPREF1181_RS06010 at 537.831 kb on + strand, within HMPREF1181_RS06010 at 537.832 kb on - strand, within HMPREF1181_RS06010 at 537.834 kb on + strand, within HMPREF1181_RS06010 at 537.835 kb on - strand, within HMPREF1181_RS06010 at 537.840 kb on - strand, within HMPREF1181_RS06010 at 537.840 kb on - strand, within HMPREF1181_RS06010 at 537.842 kb on - strand, within HMPREF1181_RS06010 at 537.969 kb on - strand, within HMPREF1181_RS06010 at 537.969 kb on - strand, within HMPREF1181_RS06010 at 537.995 kb on + strand, within HMPREF1181_RS06010 at 537.995 kb on + strand, within HMPREF1181_RS06010 at 537.996 kb on - strand, within HMPREF1181_RS06010 at 538.065 kb on + strand, within HMPREF1181_RS06010
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 535,172 - HMPREF1181_RS06000 0.60 +0.6 535,262 - HMPREF1181_RS06000 0.64 -0.0 535,465 + HMPREF1181_RS06000 0.73 +0.1 535,481 + HMPREF1181_RS06000 0.73 -2.5 535,482 - HMPREF1181_RS06000 0.73 -0.3 535,587 + HMPREF1181_RS06000 0.78 +0.5 535,588 - HMPREF1181_RS06000 0.78 -0.9 535,663 - HMPREF1181_RS06000 0.81 +0.7 535,686 - HMPREF1181_RS06000 0.82 +0.2 535,686 - HMPREF1181_RS06000 0.82 -0.6 535,737 - HMPREF1181_RS06000 0.85 +0.2 535,886 + +0.0 535,887 - -0.1 535,977 + +0.9 536,065 + +1.4 536,129 - +1.0 536,202 + +0.1 536,203 - +0.3 536,255 + HMPREF1181_RS06005 0.14 -0.2 536,255 + HMPREF1181_RS06005 0.14 +0.2 536,260 + HMPREF1181_RS06005 0.15 +0.2 536,380 - HMPREF1181_RS06005 0.27 +0.5 536,484 - HMPREF1181_RS06005 0.38 +0.8 536,576 - HMPREF1181_RS06005 0.47 +1.0 536,576 - HMPREF1181_RS06005 0.47 -0.2 536,662 + HMPREF1181_RS06005 0.56 -0.1 536,704 + HMPREF1181_RS06005 0.60 +0.4 536,754 + HMPREF1181_RS06005 0.65 +0.3 536,797 - HMPREF1181_RS06005 0.69 +0.0 536,908 + HMPREF1181_RS06005 0.81 +0.2 537,036 - +0.1 537,085 + +0.9 537,092 - +0.5 537,112 - -0.6 537,141 + -0.1 537,142 - +0.3 537,145 + -0.5 537,148 - +0.2 537,150 - -0.6 537,240 + -0.5 537,260 + +0.1 537,274 - +0.0 537,278 - +0.1 537,295 + -0.1 537,458 + HMPREF1181_RS06010 0.17 -0.9 537,561 + HMPREF1181_RS06010 0.24 -1.0 537,562 - HMPREF1181_RS06010 0.24 +0.0 537,564 - HMPREF1181_RS06010 0.25 +0.6 537,564 - HMPREF1181_RS06010 0.25 -1.5 537,578 - HMPREF1181_RS06010 0.26 -1.6 537,578 - HMPREF1181_RS06010 0.26 +0.4 537,580 - HMPREF1181_RS06010 0.26 +0.2 537,651 + HMPREF1181_RS06010 0.31 +0.4 537,651 + HMPREF1181_RS06010 0.31 +0.6 537,706 - HMPREF1181_RS06010 0.35 +0.6 537,709 - HMPREF1181_RS06010 0.36 -0.8 537,716 + HMPREF1181_RS06010 0.36 -0.9 537,716 + HMPREF1181_RS06010 0.36 -0.3 537,830 - HMPREF1181_RS06010 0.45 -1.0 537,831 + HMPREF1181_RS06010 0.45 -0.2 537,831 + HMPREF1181_RS06010 0.45 +0.5 537,831 + HMPREF1181_RS06010 0.45 -0.8 537,832 - HMPREF1181_RS06010 0.45 +0.0 537,834 + HMPREF1181_RS06010 0.45 -1.3 537,835 - HMPREF1181_RS06010 0.45 +0.1 537,840 - HMPREF1181_RS06010 0.46 -1.4 537,840 - HMPREF1181_RS06010 0.46 +0.5 537,842 - HMPREF1181_RS06010 0.46 +0.4 537,969 - HMPREF1181_RS06010 0.55 -0.5 537,969 - HMPREF1181_RS06010 0.55 -1.2 537,995 + HMPREF1181_RS06010 0.57 -0.2 537,995 + HMPREF1181_RS06010 0.57 -1.0 537,996 - HMPREF1181_RS06010 0.57 -0.3 538,065 + HMPREF1181_RS06010 0.63 -0.1
Or see this region's nucleotide sequence