Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS04435

Experiment: Galactan from Potato 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS04430 and HMPREF1181_RS04435 are separated by 201 nucleotidesHMPREF1181_RS04435 and HMPREF1181_RS04440 are separated by 46 nucleotides HMPREF1181_RS04430: HMPREF1181_RS04430 - class I mannose-6-phosphate isomerase, at 121,834 to 122,808 _RS04430 HMPREF1181_RS04435: HMPREF1181_RS04435 - galactose mutarotase, at 123,010 to 124,107 _RS04435 HMPREF1181_RS04440: HMPREF1181_RS04440 - MFS transporter, at 124,154 to 125,464 _RS04440 Position (kb) 123 124 125Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 122.046 kb on - strand, within HMPREF1181_RS04430at 122.048 kb on - strand, within HMPREF1181_RS04430at 122.109 kb on - strand, within HMPREF1181_RS04430at 122.949 kb on + strandat 123.009 kb on + strandat 123.021 kb on + strandat 123.077 kb on + strandat 123.077 kb on + strandat 123.098 kb on + strandat 123.098 kb on + strandat 123.099 kb on - strandat 123.146 kb on - strand, within HMPREF1181_RS04435at 123.224 kb on + strand, within HMPREF1181_RS04435at 123.225 kb on - strand, within HMPREF1181_RS04435at 123.233 kb on + strand, within HMPREF1181_RS04435at 123.234 kb on - strand, within HMPREF1181_RS04435at 123.236 kb on + strand, within HMPREF1181_RS04435at 123.236 kb on + strand, within HMPREF1181_RS04435at 123.311 kb on + strand, within HMPREF1181_RS04435at 123.311 kb on + strand, within HMPREF1181_RS04435at 123.312 kb on - strand, within HMPREF1181_RS04435at 123.436 kb on + strand, within HMPREF1181_RS04435at 123.438 kb on + strand, within HMPREF1181_RS04435at 123.438 kb on + strand, within HMPREF1181_RS04435at 123.476 kb on + strand, within HMPREF1181_RS04435at 123.493 kb on + strand, within HMPREF1181_RS04435at 123.525 kb on + strand, within HMPREF1181_RS04435at 123.528 kb on - strand, within HMPREF1181_RS04435at 123.532 kb on + strand, within HMPREF1181_RS04435at 123.563 kb on + strand, within HMPREF1181_RS04435at 123.600 kb on + strand, within HMPREF1181_RS04435at 123.634 kb on - strand, within HMPREF1181_RS04435at 123.659 kb on - strand, within HMPREF1181_RS04435at 123.659 kb on - strand, within HMPREF1181_RS04435at 123.663 kb on - strand, within HMPREF1181_RS04435at 123.677 kb on + strand, within HMPREF1181_RS04435at 123.715 kb on - strand, within HMPREF1181_RS04435at 123.720 kb on + strand, within HMPREF1181_RS04435at 123.809 kb on - strand, within HMPREF1181_RS04435at 123.859 kb on - strand, within HMPREF1181_RS04435at 123.859 kb on - strand, within HMPREF1181_RS04435at 123.890 kb on + strand, within HMPREF1181_RS04435at 123.892 kb on + strand, within HMPREF1181_RS04435at 123.919 kb on + strand, within HMPREF1181_RS04435at 123.986 kb on + strand, within HMPREF1181_RS04435at 123.987 kb on - strand, within HMPREF1181_RS04435at 124.076 kb on + strandat 124.129 kb on + strandat 124.308 kb on + strand, within HMPREF1181_RS04440at 124.358 kb on - strand, within HMPREF1181_RS04440at 124.376 kb on + strand, within HMPREF1181_RS04440at 124.379 kb on - strand, within HMPREF1181_RS04440at 124.402 kb on + strand, within HMPREF1181_RS04440at 124.507 kb on - strand, within HMPREF1181_RS04440at 124.507 kb on - strand, within HMPREF1181_RS04440at 124.510 kb on + strand, within HMPREF1181_RS04440at 124.513 kb on + strand, within HMPREF1181_RS04440at 124.513 kb on + strand, within HMPREF1181_RS04440at 124.638 kb on + strand, within HMPREF1181_RS04440at 124.639 kb on - strand, within HMPREF1181_RS04440at 124.688 kb on + strand, within HMPREF1181_RS04440at 124.845 kb on + strand, within HMPREF1181_RS04440at 124.852 kb on - strand, within HMPREF1181_RS04440at 124.852 kb on - strand, within HMPREF1181_RS04440at 124.914 kb on + strand, within HMPREF1181_RS04440at 124.915 kb on - strand, within HMPREF1181_RS04440at 124.915 kb on - strand, within HMPREF1181_RS04440at 125.067 kb on + strand, within HMPREF1181_RS04440

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C)
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122,046 - HMPREF1181_RS04430 0.22 +0.3
122,048 - HMPREF1181_RS04430 0.22 +0.3
122,109 - HMPREF1181_RS04430 0.28 -1.0
122,949 + -1.5
123,009 + -1.8
123,021 + -2.8
123,077 + -3.3
123,077 + -5.1
123,098 + -7.9
123,098 + -2.9
123,099 - -3.5
123,146 - HMPREF1181_RS04435 0.12 -1.7
123,224 + HMPREF1181_RS04435 0.19 -5.7
123,225 - HMPREF1181_RS04435 0.20 +0.7
123,233 + HMPREF1181_RS04435 0.20 -7.0
123,234 - HMPREF1181_RS04435 0.20 +0.3
123,236 + HMPREF1181_RS04435 0.21 -5.3
123,236 + HMPREF1181_RS04435 0.21 -2.0
123,311 + HMPREF1181_RS04435 0.27 -4.0
123,311 + HMPREF1181_RS04435 0.27 -0.3
123,312 - HMPREF1181_RS04435 0.28 -4.2
123,436 + HMPREF1181_RS04435 0.39 -4.0
123,438 + HMPREF1181_RS04435 0.39 -2.5
123,438 + HMPREF1181_RS04435 0.39 -3.4
123,476 + HMPREF1181_RS04435 0.42 -7.0
123,493 + HMPREF1181_RS04435 0.44 -3.3
123,525 + HMPREF1181_RS04435 0.47 -6.4
123,528 - HMPREF1181_RS04435 0.47 -2.0
123,532 + HMPREF1181_RS04435 0.48 -4.0
123,563 + HMPREF1181_RS04435 0.50 -5.0
123,600 + HMPREF1181_RS04435 0.54 -2.7
123,634 - HMPREF1181_RS04435 0.57 -2.1
123,659 - HMPREF1181_RS04435 0.59 -2.6
123,659 - HMPREF1181_RS04435 0.59 -4.3
123,663 - HMPREF1181_RS04435 0.59 -5.2
123,677 + HMPREF1181_RS04435 0.61 -6.1
123,715 - HMPREF1181_RS04435 0.64 -1.0
123,720 + HMPREF1181_RS04435 0.65 -1.7
123,809 - HMPREF1181_RS04435 0.73 -3.4
123,859 - HMPREF1181_RS04435 0.77 -2.3
123,859 - HMPREF1181_RS04435 0.77 -1.0
123,890 + HMPREF1181_RS04435 0.80 -5.5
123,892 + HMPREF1181_RS04435 0.80 -1.0
123,919 + HMPREF1181_RS04435 0.83 -3.5
123,986 + HMPREF1181_RS04435 0.89 -4.2
123,987 - HMPREF1181_RS04435 0.89 -1.8
124,076 + -3.6
124,129 + -0.1
124,308 + HMPREF1181_RS04440 0.12 -1.8
124,358 - HMPREF1181_RS04440 0.16 -2.3
124,376 + HMPREF1181_RS04440 0.17 -1.3
124,379 - HMPREF1181_RS04440 0.17 -4.3
124,402 + HMPREF1181_RS04440 0.19 -1.3
124,507 - HMPREF1181_RS04440 0.27 -3.3
124,507 - HMPREF1181_RS04440 0.27 -1.5
124,510 + HMPREF1181_RS04440 0.27 -3.2
124,513 + HMPREF1181_RS04440 0.27 -0.3
124,513 + HMPREF1181_RS04440 0.27 -0.7
124,638 + HMPREF1181_RS04440 0.37 -1.3
124,639 - HMPREF1181_RS04440 0.37 -6.2
124,688 + HMPREF1181_RS04440 0.41 -1.5
124,845 + HMPREF1181_RS04440 0.53 -0.3
124,852 - HMPREF1181_RS04440 0.53 -3.1
124,852 - HMPREF1181_RS04440 0.53 -3.8
124,914 + HMPREF1181_RS04440 0.58 -1.7
124,915 - HMPREF1181_RS04440 0.58 -3.5
124,915 - HMPREF1181_RS04440 0.58 -0.3
125,067 + HMPREF1181_RS04440 0.70 -0.3

Or see this region's nucleotide sequence