Strain Fitness in Variovorax sp. SCN45 around GFF894

Experiment: M9 with Supernatant from Cyptococcus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF893 and GFF894 are separated by 34 nucleotidesGFF894 and GFF895 are separated by 78 nucleotides GFF893 - FIG138928: iron-regulated membrane protein, at 203,172 to 204,857 GFF893 GFF894 - FIG024006: iron uptake protein, at 204,892 to 205,191 GFF894 GFF895 - Putative transcriptional regulatory protein, at 205,270 to 206,307 GFF895 Position (kb) 204 205 206Strain fitness (log2 ratio) -2 -1 0 1 2 3at 203.911 kb on + strand, within GFF893at 203.912 kb on - strand, within GFF893at 203.912 kb on - strand, within GFF893at 203.923 kb on + strand, within GFF893at 203.923 kb on + strand, within GFF893at 203.923 kb on + strand, within GFF893at 203.923 kb on + strand, within GFF893at 203.923 kb on + strand, within GFF893at 203.924 kb on - strand, within GFF893at 203.924 kb on - strand, within GFF893at 203.924 kb on - strand, within GFF893at 203.924 kb on - strand, within GFF893at 203.924 kb on - strand, within GFF893at 203.924 kb on - strand, within GFF893at 203.924 kb on - strand, within GFF893at 204.142 kb on + strand, within GFF893at 204.142 kb on + strand, within GFF893at 204.142 kb on + strand, within GFF893at 204.142 kb on + strand, within GFF893at 204.143 kb on - strand, within GFF893at 204.143 kb on - strand, within GFF893at 204.355 kb on + strand, within GFF893at 204.356 kb on - strand, within GFF893at 204.356 kb on - strand, within GFF893at 204.356 kb on - strand, within GFF893at 204.388 kb on + strand, within GFF893at 204.388 kb on + strand, within GFF893at 204.389 kb on - strand, within GFF893at 204.389 kb on - strand, within GFF893at 204.517 kb on + strand, within GFF893at 204.517 kb on + strand, within GFF893at 204.517 kb on + strand, within GFF893at 204.518 kb on - strand, within GFF893at 204.560 kb on - strand, within GFF893at 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.819 kb on - strandat 204.819 kb on - strandat 204.819 kb on - strandat 204.819 kb on - strandat 204.819 kb on - strandat 204.819 kb on - strandat 204.819 kb on - strandat 204.819 kb on - strandat 204.819 kb on - strandat 205.034 kb on + strand, within GFF894at 205.034 kb on + strand, within GFF894at 205.035 kb on - strand, within GFF894at 205.035 kb on - strand, within GFF894at 205.035 kb on - strand, within GFF894at 205.122 kb on - strand, within GFF894at 205.122 kb on - strand, within GFF894at 205.122 kb on - strand, within GFF894at 205.258 kb on + strandat 205.265 kb on + strandat 205.265 kb on + strandat 205.266 kb on - strandat 205.277 kb on - strandat 205.382 kb on + strand, within GFF895at 205.706 kb on + strand, within GFF895at 205.707 kb on - strand, within GFF895at 205.782 kb on - strand, within GFF895at 206.106 kb on - strand, within GFF895at 206.106 kb on - strand, within GFF895at 206.106 kb on - strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
remove
203,911 + GFF893 0.44 +0.2
203,912 - GFF893 0.44 -0.5
203,912 - GFF893 0.44 -2.0
203,923 + GFF893 0.45 +0.4
203,923 + GFF893 0.45 +0.6
203,923 + GFF893 0.45 -0.4
203,923 + GFF893 0.45 -1.3
203,923 + GFF893 0.45 -0.1
203,924 - GFF893 0.45 -0.2
203,924 - GFF893 0.45 +1.4
203,924 - GFF893 0.45 -0.1
203,924 - GFF893 0.45 +0.4
203,924 - GFF893 0.45 -0.7
203,924 - GFF893 0.45 +0.4
203,924 - GFF893 0.45 +0.0
204,142 + GFF893 0.58 +0.1
204,142 + GFF893 0.58 +0.3
204,142 + GFF893 0.58 -1.5
204,142 + GFF893 0.58 -0.1
204,143 - GFF893 0.58 +0.6
204,143 - GFF893 0.58 +0.4
204,355 + GFF893 0.70 +0.1
204,356 - GFF893 0.70 +1.0
204,356 - GFF893 0.70 +0.8
204,356 - GFF893 0.70 -0.2
204,388 + GFF893 0.72 -1.0
204,388 + GFF893 0.72 -0.5
204,389 - GFF893 0.72 -0.3
204,389 - GFF893 0.72 -1.6
204,517 + GFF893 0.80 -0.3
204,517 + GFF893 0.80 -1.0
204,517 + GFF893 0.80 +1.0
204,518 - GFF893 0.80 -0.7
204,560 - GFF893 0.82 -0.2
204,818 + -0.5
204,818 + -0.4
204,818 + -0.8
204,818 + +0.1
204,818 + +0.2
204,818 + +0.1
204,818 + +0.2
204,818 + +0.3
204,818 + -0.9
204,818 + -0.9
204,818 + -0.6
204,819 - -0.2
204,819 - -0.5
204,819 - -0.2
204,819 - +0.5
204,819 - -1.6
204,819 - -0.6
204,819 - -0.2
204,819 - -0.4
204,819 - +2.9
205,034 + GFF894 0.47 -0.2
205,034 + GFF894 0.47 -1.1
205,035 - GFF894 0.48 -0.6
205,035 - GFF894 0.48 -0.2
205,035 - GFF894 0.48 -0.5
205,122 - GFF894 0.77 +0.1
205,122 - GFF894 0.77 -1.6
205,122 - GFF894 0.77 -1.4
205,258 + -0.4
205,265 + -0.7
205,265 + -0.3
205,266 - +1.1
205,277 - -0.5
205,382 + GFF895 0.11 +0.1
205,706 + GFF895 0.42 -0.0
205,707 - GFF895 0.42 -0.7
205,782 - GFF895 0.49 -0.2
206,106 - GFF895 0.81 +0.6
206,106 - GFF895 0.81 -0.7
206,106 - GFF895 0.81 -0.4
206,114 + GFF895 0.81 -0.7
206,114 + GFF895 0.81 -0.7
206,114 + GFF895 0.81 -0.4
206,114 + GFF895 0.81 +0.6
206,114 + GFF895 0.81 -2.1
206,114 + GFF895 0.81 -0.7
206,114 + GFF895 0.81 +0.7
206,114 + GFF895 0.81 -0.2
206,114 + GFF895 0.81 -1.2
206,115 - GFF895 0.81 +1.6
206,115 - GFF895 0.81 -0.2
206,115 - GFF895 0.81 +0.6
206,115 - GFF895 0.81 +0.0
206,115 - GFF895 0.81 +0.4
206,115 - GFF895 0.81 -0.1
206,115 - GFF895 0.81 -1.4
206,115 - GFF895 0.81 -0.2
206,115 - GFF895 0.81 -0.7
206,115 - GFF895 0.81 -0.1
206,115 - GFF895 0.81 +3.2

Or see this region's nucleotide sequence