Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF844 and GFF845 are separated by 90 nucleotides GFF845 and GFF846 overlap by 4 nucleotides GFF846 and GFF847 are separated by 16 nucleotides GFF847 and GFF848 are separated by 19 nucleotides
GFF844 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 153,222 to 154,661
GFF844
GFF845 - dTDP-glucose 4,6-dehydratase, at 154,752 to 155,495
GFF845
GFF846 - hypothetical protein, at 155,492 to 156,025
GFF846
GFF847 - Acetyltransferase, at 156,042 to 156,548
GFF847
GFF848 - no description, at 156,568 to 157,011
GFF848
Position (kb) 155
156
157 Strain fitness (log2 ratio) -2
-1
0
1
2 at 154.579 kb on + strand at 154.580 kb on - strand at 154.715 kb on - strand at 154.715 kb on - strand at 154.765 kb on + strand at 154.765 kb on + strand at 154.830 kb on + strand, within GFF845 at 155.130 kb on + strand, within GFF845 at 155.131 kb on - strand, within GFF845 at 155.131 kb on - strand, within GFF845 at 156.070 kb on + strand at 156.071 kb on - strand at 156.121 kb on + strand, within GFF847 at 156.121 kb on + strand, within GFF847 at 156.122 kb on - strand, within GFF847 at 156.122 kb on - strand, within GFF847 at 156.122 kb on - strand, within GFF847 at 156.181 kb on + strand, within GFF847 at 156.182 kb on - strand, within GFF847 at 156.184 kb on + strand, within GFF847 at 156.185 kb on - strand, within GFF847 at 156.615 kb on - strand, within GFF848 at 156.656 kb on + strand, within GFF848 at 156.656 kb on + strand, within GFF848 at 156.657 kb on - strand, within GFF848 at 156.657 kb on - strand, within GFF848 at 156.657 kb on - strand, within GFF848 at 156.657 kb on - strand, within GFF848 at 156.690 kb on + strand, within GFF848 at 156.691 kb on - strand, within GFF848 at 156.768 kb on - strand, within GFF848
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 154,579 + -0.7 154,580 - -0.7 154,715 - +0.8 154,715 - -1.2 154,765 + -1.0 154,765 + -0.0 154,830 + GFF845 0.10 -0.4 155,130 + GFF845 0.51 -0.1 155,131 - GFF845 0.51 +0.4 155,131 - GFF845 0.51 -1.4 156,070 + -0.5 156,071 - +1.7 156,121 + GFF847 0.16 -1.2 156,121 + GFF847 0.16 -1.4 156,122 - GFF847 0.16 +0.2 156,122 - GFF847 0.16 -0.6 156,122 - GFF847 0.16 +0.5 156,181 + GFF847 0.27 -0.6 156,182 - GFF847 0.28 -0.2 156,184 + GFF847 0.28 +0.5 156,185 - GFF847 0.28 +0.1 156,615 - GFF848 0.11 -0.4 156,656 + GFF848 0.20 -1.7 156,656 + GFF848 0.20 -1.6 156,657 - GFF848 0.20 -2.5 156,657 - GFF848 0.20 -1.2 156,657 - GFF848 0.20 -0.5 156,657 - GFF848 0.20 +0.6 156,690 + GFF848 0.27 +1.8 156,691 - GFF848 0.28 -1.1 156,768 - GFF848 0.45 -1.6
Or see this region's nucleotide sequence