Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7193 and GFF7194 overlap by 4 nucleotides GFF7194 and GFF7195 overlap by 4 nucleotides GFF7195 and GFF7196 overlap by 4 nucleotides GFF7196 and GFF7197 are separated by 10 nucleotides
GFF7193 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 11,288 to 12,325
GFF7193
GFF7194 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 12,322 to 13,164
GFF7194
GFF7195 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 13,161 to 14,174
GFF7195
GFF7196 - Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-), at 14,171 to 15,022
GFF7196
GFF7197 - KEGG: peptide/nickel transport system ATP-binding protein, at 15,033 to 15,869
GFF7197
Position (kb) 13
14
15 Strain fitness (log2 ratio) -1
0
1
2 at 12.182 kb on + strand, within GFF7193 at 12.182 kb on + strand, within GFF7193 at 12.182 kb on + strand, within GFF7193 at 12.182 kb on + strand, within GFF7193 at 12.183 kb on - strand, within GFF7193 at 12.183 kb on - strand, within GFF7193 at 12.183 kb on - strand, within GFF7193 at 12.446 kb on + strand, within GFF7194 at 12.446 kb on + strand, within GFF7194 at 12.447 kb on - strand, within GFF7194 at 12.769 kb on + strand, within GFF7194 at 12.769 kb on + strand, within GFF7194 at 12.770 kb on - strand, within GFF7194 at 12.770 kb on - strand, within GFF7194 at 12.817 kb on + strand, within GFF7194 at 12.818 kb on - strand, within GFF7194 at 13.024 kb on + strand, within GFF7194 at 13.024 kb on + strand, within GFF7194 at 13.024 kb on + strand, within GFF7194 at 13.025 kb on - strand, within GFF7194 at 13.025 kb on - strand, within GFF7194 at 13.025 kb on - strand, within GFF7194 at 13.025 kb on - strand, within GFF7194 at 13.532 kb on - strand, within GFF7195 at 13.923 kb on + strand, within GFF7195 at 14.573 kb on + strand, within GFF7196 at 14.666 kb on + strand, within GFF7196 at 14.666 kb on + strand, within GFF7196 at 14.667 kb on - strand, within GFF7196 at 14.867 kb on + strand, within GFF7196 at 14.868 kb on - strand, within GFF7196 at 14.868 kb on - strand, within GFF7196 at 14.891 kb on + strand, within GFF7196 at 14.892 kb on - strand, within GFF7196 at 14.892 kb on - strand, within GFF7196
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 12,182 + GFF7193 0.86 +0.9 12,182 + GFF7193 0.86 +0.8 12,182 + GFF7193 0.86 +1.6 12,182 + GFF7193 0.86 -0.2 12,183 - GFF7193 0.86 -0.2 12,183 - GFF7193 0.86 -1.6 12,183 - GFF7193 0.86 -0.5 12,446 + GFF7194 0.15 -0.3 12,446 + GFF7194 0.15 -1.4 12,447 - GFF7194 0.15 +0.6 12,769 + GFF7194 0.53 +0.4 12,769 + GFF7194 0.53 -1.2 12,770 - GFF7194 0.53 +0.8 12,770 - GFF7194 0.53 -0.6 12,817 + GFF7194 0.59 -1.1 12,818 - GFF7194 0.59 -1.0 13,024 + GFF7194 0.83 -0.1 13,024 + GFF7194 0.83 -0.1 13,024 + GFF7194 0.83 -0.0 13,025 - GFF7194 0.83 -0.7 13,025 - GFF7194 0.83 +0.4 13,025 - GFF7194 0.83 -0.6 13,025 - GFF7194 0.83 +1.8 13,532 - GFF7195 0.37 -1.4 13,923 + GFF7195 0.75 -0.1 14,573 + GFF7196 0.47 +0.8 14,666 + GFF7196 0.58 -0.8 14,666 + GFF7196 0.58 +0.8 14,667 - GFF7196 0.58 +0.2 14,867 + GFF7196 0.82 +0.6 14,868 - GFF7196 0.82 -0.1 14,868 - GFF7196 0.82 -0.2 14,891 + GFF7196 0.85 +0.0 14,892 - GFF7196 0.85 -0.6 14,892 - GFF7196 0.85 -0.3
Or see this region's nucleotide sequence