Strain Fitness in Variovorax sp. SCN45 around GFF6850

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6849 and GFF6850 are separated by 70 nucleotidesGFF6850 and GFF6851 are separated by 30 nucleotidesGFF6851 and GFF6852 are separated by 75 nucleotides GFF6849 - MotA/TolQ/ExbB proton channel family protein, at 31,036 to 32,844 GFF6849 GFF6850 - Hemolysin activation/secretion protein associated with VreARI signalling system, at 32,915 to 34,564 GFF6850 GFF6851 - no description, at 34,595 to 34,741 GFF6851 GFF6852 - Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system, at 34,817 to 48,493 GFF6852 Position (kb) 32 33 34 35Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 31.992 kb on + strand, within GFF6849at 31.993 kb on - strand, within GFF6849at 31.993 kb on - strand, within GFF6849at 32.027 kb on + strand, within GFF6849at 32.186 kb on + strand, within GFF6849at 32.186 kb on + strand, within GFF6849at 32.186 kb on + strand, within GFF6849at 32.186 kb on + strand, within GFF6849at 32.186 kb on + strand, within GFF6849at 32.186 kb on + strand, within GFF6849at 32.186 kb on + strand, within GFF6849at 32.186 kb on + strand, within GFF6849at 32.187 kb on - strand, within GFF6849at 32.187 kb on - strand, within GFF6849at 32.187 kb on - strand, within GFF6849at 32.187 kb on - strand, within GFF6849at 32.187 kb on - strand, within GFF6849at 32.187 kb on - strand, within GFF6849at 32.187 kb on - strand, within GFF6849at 32.187 kb on - strand, within GFF6849at 32.187 kb on - strand, within GFF6849at 32.187 kb on - strand, within GFF6849at 32.369 kb on + strand, within GFF6849at 32.414 kb on + strand, within GFF6849at 32.414 kb on + strand, within GFF6849at 32.414 kb on + strand, within GFF6849at 32.414 kb on + strand, within GFF6849at 32.415 kb on - strand, within GFF6849at 32.415 kb on - strand, within GFF6849at 32.415 kb on - strand, within GFF6849at 32.427 kb on - strand, within GFF6849at 32.483 kb on + strand, within GFF6849at 32.484 kb on - strand, within GFF6849at 32.486 kb on + strand, within GFF6849at 32.486 kb on + strand, within GFF6849at 32.486 kb on + strand, within GFF6849at 32.486 kb on + strand, within GFF6849at 32.486 kb on + strand, within GFF6849at 32.487 kb on - strand, within GFF6849at 32.487 kb on - strand, within GFF6849at 32.487 kb on - strand, within GFF6849at 32.487 kb on - strand, within GFF6849at 32.487 kb on - strand, within GFF6849at 32.487 kb on - strand, within GFF6849at 32.487 kb on - strand, within GFF6849at 32.833 kb on + strandat 32.833 kb on + strandat 32.833 kb on + strandat 32.833 kb on + strandat 32.919 kb on + strandat 32.920 kb on - strandat 32.920 kb on - strandat 32.920 kb on - strandat 32.920 kb on - strandat 32.920 kb on - strandat 32.920 kb on - strandat 33.015 kb on + strandat 33.015 kb on + strandat 33.015 kb on + strandat 33.015 kb on + strandat 33.016 kb on - strandat 33.016 kb on - strandat 33.016 kb on - strandat 33.016 kb on - strandat 33.016 kb on - strandat 33.126 kb on + strand, within GFF6850at 33.126 kb on + strand, within GFF6850at 33.126 kb on + strand, within GFF6850at 33.126 kb on + strand, within GFF6850at 33.127 kb on - strand, within GFF6850at 33.127 kb on - strand, within GFF6850at 33.127 kb on - strand, within GFF6850at 33.127 kb on - strand, within GFF6850at 33.127 kb on - strand, within GFF6850at 33.127 kb on - strand, within GFF6850at 33.231 kb on + strand, within GFF6850at 33.232 kb on - strand, within GFF6850at 33.345 kb on + strand, within GFF6850at 33.345 kb on + strand, within GFF6850at 33.345 kb on + strand, within GFF6850at 33.346 kb on - strand, within GFF6850at 33.346 kb on - strand, within GFF6850at 33.346 kb on - strand, within GFF6850at 33.346 kb on - strand, within GFF6850at 33.346 kb on - strand, within GFF6850at 33.396 kb on + strand, within GFF6850at 33.396 kb on + strand, within GFF6850at 33.396 kb on + strand, within GFF6850at 33.397 kb on - strand, within GFF6850at 33.405 kb on + strand, within GFF6850at 33.405 kb on + strand, within GFF6850at 33.406 kb on - strand, within GFF6850at 33.433 kb on - strand, within GFF6850at 33.433 kb on - strand, within GFF6850at 33.481 kb on - strand, within GFF6850at 33.534 kb on + strand, within GFF6850at 33.534 kb on + strand, within GFF6850at 33.534 kb on + strand, within GFF6850at 33.534 kb on + strand, within GFF6850at 33.534 kb on + strand, within GFF6850at 33.535 kb on - strand, within GFF6850at 33.535 kb on - strand, within GFF6850at 33.648 kb on + strand, within GFF6850at 33.648 kb on + strand, within GFF6850at 33.648 kb on + strand, within GFF6850at 33.648 kb on + strand, within GFF6850at 33.649 kb on - strand, within GFF6850at 33.649 kb on - strand, within GFF6850at 33.649 kb on - strand, within GFF6850at 33.649 kb on - strand, within GFF6850at 33.729 kb on + strand, within GFF6850at 33.729 kb on + strand, within GFF6850at 33.730 kb on - strand, within GFF6850at 33.730 kb on - strand, within GFF6850at 33.730 kb on - strand, within GFF6850at 33.730 kb on - strand, within GFF6850at 33.730 kb on - strand, within GFF6850at 33.777 kb on + strand, within GFF6850at 33.777 kb on + strand, within GFF6850at 33.777 kb on + strand, within GFF6850at 33.915 kb on + strand, within GFF6850at 33.915 kb on + strand, within GFF6850at 33.915 kb on + strand, within GFF6850at 33.916 kb on - strand, within GFF6850at 33.916 kb on - strand, within GFF6850at 34.137 kb on + strand, within GFF6850at 34.137 kb on + strand, within GFF6850at 34.137 kb on + strand, within GFF6850at 34.137 kb on + strand, within GFF6850at 34.138 kb on - strand, within GFF6850at 34.233 kb on + strand, within GFF6850at 34.233 kb on + strand, within GFF6850at 34.233 kb on + strand, within GFF6850at 34.234 kb on - strand, within GFF6850at 34.234 kb on - strand, within GFF6850at 34.261 kb on - strand, within GFF6850at 34.383 kb on + strand, within GFF6850at 34.384 kb on - strand, within GFF6850at 34.384 kb on - strand, within GFF6850at 34.566 kb on + strandat 34.566 kb on + strandat 34.567 kb on - strandat 34.567 kb on - strandat 34.567 kb on - strandat 34.567 kb on - strandat 34.567 kb on - strandat 34.567 kb on - strandat 34.638 kb on + strand, within GFF6851at 34.639 kb on - strand, within GFF6851at 34.639 kb on - strand, within GFF6851at 34.639 kb on - strand, within GFF6851at 34.644 kb on + strand, within GFF6851at 34.644 kb on + strand, within GFF6851at 34.645 kb on - strand, within GFF6851at 34.648 kb on + strand, within GFF6851at 34.649 kb on - strand, within GFF6851at 34.649 kb on - strand, within GFF6851at 34.649 kb on - strand, within GFF6851at 34.663 kb on - strand, within GFF6851at 34.739 kb on + strandat 34.739 kb on + strandat 34.739 kb on + strandat 34.739 kb on + strandat 34.739 kb on + strandat 34.917 kb on + strandat 35.379 kb on + strandat 35.400 kb on + strandat 35.400 kb on + strandat 35.401 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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31,992 + GFF6849 0.53 +0.6
31,993 - GFF6849 0.53 +0.1
31,993 - GFF6849 0.53 -2.5
32,027 + GFF6849 0.55 -0.9
32,186 + GFF6849 0.64 -0.4
32,186 + GFF6849 0.64 -1.4
32,186 + GFF6849 0.64 +0.3
32,186 + GFF6849 0.64 -0.4
32,186 + GFF6849 0.64 -0.4
32,186 + GFF6849 0.64 +0.3
32,186 + GFF6849 0.64 -0.4
32,186 + GFF6849 0.64 +1.9
32,187 - GFF6849 0.64 +0.7
32,187 - GFF6849 0.64 -0.1
32,187 - GFF6849 0.64 -0.3
32,187 - GFF6849 0.64 -2.0
32,187 - GFF6849 0.64 -0.5
32,187 - GFF6849 0.64 -0.4
32,187 - GFF6849 0.64 +0.3
32,187 - GFF6849 0.64 -1.4
32,187 - GFF6849 0.64 -0.2
32,187 - GFF6849 0.64 -0.3
32,369 + GFF6849 0.74 -0.2
32,414 + GFF6849 0.76 +0.3
32,414 + GFF6849 0.76 +0.3
32,414 + GFF6849 0.76 -0.4
32,414 + GFF6849 0.76 +0.4
32,415 - GFF6849 0.76 +0.5
32,415 - GFF6849 0.76 +0.6
32,415 - GFF6849 0.76 +2.5
32,427 - GFF6849 0.77 -0.5
32,483 + GFF6849 0.80 -0.5
32,484 - GFF6849 0.80 +0.7
32,486 + GFF6849 0.80 -0.8
32,486 + GFF6849 0.80 -0.6
32,486 + GFF6849 0.80 +1.2
32,486 + GFF6849 0.80 -0.1
32,486 + GFF6849 0.80 -1.6
32,487 - GFF6849 0.80 +0.0
32,487 - GFF6849 0.80 +0.7
32,487 - GFF6849 0.80 -0.5
32,487 - GFF6849 0.80 -1.1
32,487 - GFF6849 0.80 -0.3
32,487 - GFF6849 0.80 +0.0
32,487 - GFF6849 0.80 -0.8
32,833 + -0.1
32,833 + -0.2
32,833 + +1.5
32,833 + -0.8
32,919 + +0.2
32,920 - +0.7
32,920 - -0.1
32,920 - -0.0
32,920 - +0.5
32,920 - -1.4
32,920 - +0.1
33,015 + -0.2
33,015 + -0.1
33,015 + +0.2
33,015 + -0.2
33,016 - +1.1
33,016 - +0.8
33,016 - -0.9
33,016 - +1.1
33,016 - -0.7
33,126 + GFF6850 0.13 -0.3
33,126 + GFF6850 0.13 +1.0
33,126 + GFF6850 0.13 -0.7
33,126 + GFF6850 0.13 -0.2
33,127 - GFF6850 0.13 -0.1
33,127 - GFF6850 0.13 -1.7
33,127 - GFF6850 0.13 -0.6
33,127 - GFF6850 0.13 +0.0
33,127 - GFF6850 0.13 -0.0
33,127 - GFF6850 0.13 -1.4
33,231 + GFF6850 0.19 -1.0
33,232 - GFF6850 0.19 +0.8
33,345 + GFF6850 0.26 +0.5
33,345 + GFF6850 0.26 +0.3
33,345 + GFF6850 0.26 +0.5
33,346 - GFF6850 0.26 -0.6
33,346 - GFF6850 0.26 -0.8
33,346 - GFF6850 0.26 -0.1
33,346 - GFF6850 0.26 -1.1
33,346 - GFF6850 0.26 -0.4
33,396 + GFF6850 0.29 +0.0
33,396 + GFF6850 0.29 +0.2
33,396 + GFF6850 0.29 -0.9
33,397 - GFF6850 0.29 -0.4
33,405 + GFF6850 0.30 -1.1
33,405 + GFF6850 0.30 -0.6
33,406 - GFF6850 0.30 +0.1
33,433 - GFF6850 0.31 -0.5
33,433 - GFF6850 0.31 -0.5
33,481 - GFF6850 0.34 +0.1
33,534 + GFF6850 0.38 +0.0
33,534 + GFF6850 0.38 +0.5
33,534 + GFF6850 0.38 -0.4
33,534 + GFF6850 0.38 -0.9
33,534 + GFF6850 0.38 -0.1
33,535 - GFF6850 0.38 -0.2
33,535 - GFF6850 0.38 -0.5
33,648 + GFF6850 0.44 -0.9
33,648 + GFF6850 0.44 -0.3
33,648 + GFF6850 0.44 +0.5
33,648 + GFF6850 0.44 -0.8
33,649 - GFF6850 0.44 -0.4
33,649 - GFF6850 0.44 -0.0
33,649 - GFF6850 0.44 -0.8
33,649 - GFF6850 0.44 +0.4
33,729 + GFF6850 0.49 -1.3
33,729 + GFF6850 0.49 -0.8
33,730 - GFF6850 0.49 -0.7
33,730 - GFF6850 0.49 -0.1
33,730 - GFF6850 0.49 -1.9
33,730 - GFF6850 0.49 -0.4
33,730 - GFF6850 0.49 +0.7
33,777 + GFF6850 0.52 +0.6
33,777 + GFF6850 0.52 -0.9
33,777 + GFF6850 0.52 +1.0
33,915 + GFF6850 0.61 +0.2
33,915 + GFF6850 0.61 -0.2
33,915 + GFF6850 0.61 -0.9
33,916 - GFF6850 0.61 -0.4
33,916 - GFF6850 0.61 -0.7
34,137 + GFF6850 0.74 +0.0
34,137 + GFF6850 0.74 +0.1
34,137 + GFF6850 0.74 -2.8
34,137 + GFF6850 0.74 -0.4
34,138 - GFF6850 0.74 +0.1
34,233 + GFF6850 0.80 -0.6
34,233 + GFF6850 0.80 +0.0
34,233 + GFF6850 0.80 -0.1
34,234 - GFF6850 0.80 -0.3
34,234 - GFF6850 0.80 -1.4
34,261 - GFF6850 0.82 -0.7
34,383 + GFF6850 0.89 -1.2
34,384 - GFF6850 0.89 +0.2
34,384 - GFF6850 0.89 -0.3
34,566 + +0.6
34,566 + +1.6
34,567 - -0.8
34,567 - -0.3
34,567 - -0.7
34,567 - -0.3
34,567 - -0.5
34,567 - -2.4
34,638 + GFF6851 0.29 -0.2
34,639 - GFF6851 0.30 -0.8
34,639 - GFF6851 0.30 -0.6
34,639 - GFF6851 0.30 -0.7
34,644 + GFF6851 0.33 +0.0
34,644 + GFF6851 0.33 +0.6
34,645 - GFF6851 0.34 +2.0
34,648 + GFF6851 0.36 -0.6
34,649 - GFF6851 0.37 -0.2
34,649 - GFF6851 0.37 +0.3
34,649 - GFF6851 0.37 +0.2
34,663 - GFF6851 0.46 -1.4
34,739 + -0.5
34,739 + -0.5
34,739 + -1.1
34,739 + +0.9
34,739 + +0.3
34,917 + -0.1
35,379 + -0.3
35,400 + +0.7
35,400 + +0.3
35,401 - -1.1

Or see this region's nucleotide sequence