Strain Fitness in Variovorax sp. SCN45 around GFF6774

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6773 and GFF6774 are separated by 107 nucleotidesGFF6774 and GFF6775 are separated by 37 nucleotidesGFF6775 and GFF6776 overlap by 4 nucleotides GFF6773 - Transcriptional regulator, GntR family, at 19,638 to 20,381 GFF6773 GFF6774 - ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron), at 20,489 to 21,871 GFF6774 GFF6775 - ABC transporter, permease protein, at 21,909 to 22,799 GFF6775 GFF6776 - Maltodextrin ABC transporter, permease protein MdxG, at 22,796 to 23,647 GFF6776 Position (kb) 20 21 22Strain fitness (log2 ratio) -2 -1 0 1 2at 19.502 kb on + strandat 19.502 kb on + strandat 19.503 kb on - strandat 19.503 kb on - strandat 19.503 kb on - strandat 19.566 kb on + strandat 19.566 kb on + strandat 19.566 kb on + strandat 19.566 kb on + strandat 19.567 kb on - strandat 19.701 kb on + strandat 19.702 kb on - strandat 20.022 kb on + strand, within GFF6773at 20.061 kb on + strand, within GFF6773at 20.061 kb on + strand, within GFF6773at 20.269 kb on + strand, within GFF6773at 20.269 kb on + strand, within GFF6773at 20.270 kb on - strand, within GFF6773at 20.270 kb on - strand, within GFF6773at 20.270 kb on - strand, within GFF6773at 20.270 kb on - strand, within GFF6773at 20.380 kb on - strandat 20.380 kb on - strandat 20.600 kb on + strandat 20.600 kb on + strandat 20.600 kb on + strandat 20.600 kb on + strandat 20.601 kb on - strandat 20.601 kb on - strandat 20.601 kb on - strandat 20.601 kb on - strandat 20.765 kb on + strand, within GFF6774at 20.766 kb on - strand, within GFF6774at 20.766 kb on - strand, within GFF6774at 20.795 kb on + strand, within GFF6774at 20.796 kb on - strand, within GFF6774at 20.796 kb on - strand, within GFF6774at 20.796 kb on - strand, within GFF6774at 20.796 kb on - strand, within GFF6774at 20.876 kb on + strand, within GFF6774at 20.876 kb on + strand, within GFF6774at 20.876 kb on + strand, within GFF6774at 20.876 kb on + strand, within GFF6774at 20.876 kb on + strand, within GFF6774at 20.876 kb on + strand, within GFF6774at 20.877 kb on - strand, within GFF6774at 20.877 kb on - strand, within GFF6774at 20.877 kb on - strand, within GFF6774at 20.877 kb on - strand, within GFF6774at 20.883 kb on - strand, within GFF6774at 20.909 kb on + strand, within GFF6774at 20.910 kb on - strand, within GFF6774at 20.910 kb on - strand, within GFF6774at 20.913 kb on - strand, within GFF6774at 20.913 kb on - strand, within GFF6774at 20.952 kb on - strand, within GFF6774at 21.017 kb on + strand, within GFF6774at 21.018 kb on - strand, within GFF6774at 21.018 kb on - strand, within GFF6774at 21.152 kb on + strand, within GFF6774at 21.152 kb on + strand, within GFF6774at 21.152 kb on + strand, within GFF6774at 21.153 kb on - strand, within GFF6774at 21.153 kb on - strand, within GFF6774at 21.153 kb on - strand, within GFF6774at 21.239 kb on + strand, within GFF6774at 21.251 kb on + strand, within GFF6774at 21.252 kb on - strand, within GFF6774at 21.435 kb on - strand, within GFF6774at 21.435 kb on - strand, within GFF6774at 21.495 kb on - strand, within GFF6774at 21.495 kb on - strand, within GFF6774at 21.600 kb on - strand, within GFF6774at 21.600 kb on - strand, within GFF6774at 21.692 kb on + strand, within GFF6774at 21.693 kb on - strand, within GFF6774at 21.740 kb on + strandat 21.741 kb on - strandat 22.056 kb on + strand, within GFF6775at 22.102 kb on - strand, within GFF6775at 22.102 kb on - strand, within GFF6775at 22.427 kb on + strand, within GFF6775at 22.427 kb on + strand, within GFF6775at 22.428 kb on - strand, within GFF6775at 22.428 kb on - strand, within GFF6775at 22.497 kb on + strand, within GFF6775at 22.497 kb on + strand, within GFF6775at 22.497 kb on + strand, within GFF6775at 22.575 kb on + strand, within GFF6775at 22.575 kb on + strand, within GFF6775at 22.575 kb on + strand, within GFF6775at 22.575 kb on + strand, within GFF6775at 22.576 kb on - strand, within GFF6775at 22.632 kb on + strand, within GFF6775at 22.632 kb on + strand, within GFF6775at 22.632 kb on + strand, within GFF6775at 22.696 kb on - strand, within GFF6775at 22.756 kb on + strandat 22.757 kb on - strandat 22.771 kb on - strandat 22.771 kb on - strandat 22.771 kb on - strandat 22.771 kb on - strandat 22.822 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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19,502 + -0.3
19,502 + +0.2
19,503 - -0.2
19,503 - +0.3
19,503 - +0.4
19,566 + +0.4
19,566 + -0.2
19,566 + +0.0
19,566 + -0.3
19,567 - -0.8
19,701 + -1.8
19,702 - -1.5
20,022 + GFF6773 0.52 -0.3
20,061 + GFF6773 0.57 -0.3
20,061 + GFF6773 0.57 -0.0
20,269 + GFF6773 0.85 -0.8
20,269 + GFF6773 0.85 -1.0
20,270 - GFF6773 0.85 -0.6
20,270 - GFF6773 0.85 -1.9
20,270 - GFF6773 0.85 +0.1
20,270 - GFF6773 0.85 -0.4
20,380 - +0.6
20,380 - -0.1
20,600 + -0.0
20,600 + -1.1
20,600 + +0.5
20,600 + -1.5
20,601 - -2.1
20,601 - -1.0
20,601 - -0.4
20,601 - -0.5
20,765 + GFF6774 0.20 -0.4
20,766 - GFF6774 0.20 -0.8
20,766 - GFF6774 0.20 +1.3
20,795 + GFF6774 0.22 -1.9
20,796 - GFF6774 0.22 -0.8
20,796 - GFF6774 0.22 -1.0
20,796 - GFF6774 0.22 +0.9
20,796 - GFF6774 0.22 -1.0
20,876 + GFF6774 0.28 +0.3
20,876 + GFF6774 0.28 +0.1
20,876 + GFF6774 0.28 +0.1
20,876 + GFF6774 0.28 -0.0
20,876 + GFF6774 0.28 -1.7
20,876 + GFF6774 0.28 +0.1
20,877 - GFF6774 0.28 -1.0
20,877 - GFF6774 0.28 -1.2
20,877 - GFF6774 0.28 -0.9
20,877 - GFF6774 0.28 +0.4
20,883 - GFF6774 0.28 -0.9
20,909 + GFF6774 0.30 -0.6
20,910 - GFF6774 0.30 -0.7
20,910 - GFF6774 0.30 -0.7
20,913 - GFF6774 0.31 -1.1
20,913 - GFF6774 0.31 +0.1
20,952 - GFF6774 0.33 -0.8
21,017 + GFF6774 0.38 -0.5
21,018 - GFF6774 0.38 +1.3
21,018 - GFF6774 0.38 -0.0
21,152 + GFF6774 0.48 -0.2
21,152 + GFF6774 0.48 +0.5
21,152 + GFF6774 0.48 -1.0
21,153 - GFF6774 0.48 +2.1
21,153 - GFF6774 0.48 -0.8
21,153 - GFF6774 0.48 -0.1
21,239 + GFF6774 0.54 -0.5
21,251 + GFF6774 0.55 -0.5
21,252 - GFF6774 0.55 -0.6
21,435 - GFF6774 0.68 -0.3
21,435 - GFF6774 0.68 -1.6
21,495 - GFF6774 0.73 +0.2
21,495 - GFF6774 0.73 +0.2
21,600 - GFF6774 0.80 -0.1
21,600 - GFF6774 0.80 -0.4
21,692 + GFF6774 0.87 -0.4
21,693 - GFF6774 0.87 +0.6
21,740 + -0.5
21,741 - -1.3
22,056 + GFF6775 0.16 -0.9
22,102 - GFF6775 0.22 +1.7
22,102 - GFF6775 0.22 +0.2
22,427 + GFF6775 0.58 -0.4
22,427 + GFF6775 0.58 +0.2
22,428 - GFF6775 0.58 -0.3
22,428 - GFF6775 0.58 +0.6
22,497 + GFF6775 0.66 -1.8
22,497 + GFF6775 0.66 -0.2
22,497 + GFF6775 0.66 -0.9
22,575 + GFF6775 0.75 -1.0
22,575 + GFF6775 0.75 -0.2
22,575 + GFF6775 0.75 +0.1
22,575 + GFF6775 0.75 -0.7
22,576 - GFF6775 0.75 -1.3
22,632 + GFF6775 0.81 -1.4
22,632 + GFF6775 0.81 -0.5
22,632 + GFF6775 0.81 -0.7
22,696 - GFF6775 0.88 -0.8
22,756 + -0.2
22,757 - -1.2
22,771 - -1.6
22,771 - -0.9
22,771 - +0.2
22,771 - -1.0
22,822 - -0.2

Or see this region's nucleotide sequence