Strain Fitness in Variovorax sp. SCN45 around GFF6567

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6566 and GFF6567 overlap by 4 nucleotidesGFF6567 and GFF6568 are separated by 304 nucleotides GFF6566 - hypothetical protein, at 4,931 to 7,594 GFF6566 GFF6567 - hypothetical protein, at 7,591 to 9,264 GFF6567 GFF6568 - hypothetical protein, at 9,569 to 10,762 GFF6568 Position (kb) 7 8 9 10Strain fitness (log2 ratio) -2 -1 0 1 2at 6.885 kb on + strand, within GFF6566at 6.885 kb on + strand, within GFF6566at 6.886 kb on - strand, within GFF6566at 6.987 kb on + strand, within GFF6566at 6.987 kb on + strand, within GFF6566at 6.988 kb on - strand, within GFF6566at 7.209 kb on + strand, within GFF6566at 7.210 kb on - strand, within GFF6566at 7.234 kb on + strand, within GFF6566at 7.234 kb on + strand, within GFF6566at 7.234 kb on + strand, within GFF6566at 7.234 kb on + strand, within GFF6566at 7.235 kb on - strand, within GFF6566at 7.235 kb on - strand, within GFF6566at 7.235 kb on - strand, within GFF6566at 7.281 kb on + strand, within GFF6566at 7.281 kb on + strand, within GFF6566at 7.312 kb on - strand, within GFF6566at 7.381 kb on + strandat 7.382 kb on - strandat 7.625 kb on + strandat 7.625 kb on + strandat 7.625 kb on + strandat 7.625 kb on + strandat 7.626 kb on - strandat 7.626 kb on - strandat 7.626 kb on - strandat 7.647 kb on - strandat 7.647 kb on - strandat 7.647 kb on - strandat 7.715 kb on + strandat 7.715 kb on + strandat 7.715 kb on + strandat 7.715 kb on + strandat 7.715 kb on + strandat 7.715 kb on + strandat 7.715 kb on + strandat 7.715 kb on + strandat 7.715 kb on + strandat 7.715 kb on + strandat 7.715 kb on + strandat 7.716 kb on - strandat 7.716 kb on - strandat 7.716 kb on - strandat 7.716 kb on - strandat 7.716 kb on - strandat 7.716 kb on - strandat 7.716 kb on - strandat 7.716 kb on - strandat 7.716 kb on - strandat 7.772 kb on + strand, within GFF6567at 7.773 kb on - strand, within GFF6567at 8.171 kb on + strand, within GFF6567at 8.172 kb on - strand, within GFF6567at 8.172 kb on - strand, within GFF6567at 8.172 kb on - strand, within GFF6567at 8.195 kb on + strand, within GFF6567at 8.195 kb on + strand, within GFF6567at 8.196 kb on - strand, within GFF6567at 8.196 kb on - strand, within GFF6567at 8.196 kb on - strand, within GFF6567at 8.196 kb on - strand, within GFF6567at 8.324 kb on + strand, within GFF6567at 8.324 kb on + strand, within GFF6567at 8.324 kb on + strand, within GFF6567at 8.324 kb on + strand, within GFF6567at 8.324 kb on + strand, within GFF6567at 8.324 kb on + strand, within GFF6567at 8.324 kb on + strand, within GFF6567at 8.324 kb on + strand, within GFF6567at 8.324 kb on + strand, within GFF6567at 8.324 kb on + strand, within GFF6567at 8.324 kb on + strand, within GFF6567at 8.325 kb on - strand, within GFF6567at 8.325 kb on - strand, within GFF6567at 8.325 kb on - strand, within GFF6567at 8.325 kb on - strand, within GFF6567at 8.325 kb on - strand, within GFF6567at 8.325 kb on - strand, within GFF6567at 8.325 kb on - strand, within GFF6567at 8.325 kb on - strand, within GFF6567at 8.325 kb on - strand, within GFF6567at 8.325 kb on - strand, within GFF6567at 8.360 kb on + strand, within GFF6567at 8.361 kb on - strand, within GFF6567at 8.609 kb on + strand, within GFF6567at 8.610 kb on - strand, within GFF6567at 8.610 kb on - strand, within GFF6567at 9.264 kb on + strandat 9.264 kb on + strandat 9.264 kb on + strandat 9.264 kb on + strandat 9.264 kb on + strandat 9.264 kb on + strandat 9.264 kb on + strandat 9.264 kb on + strandat 9.264 kb on + strandat 9.265 kb on - strandat 9.265 kb on - strandat 9.265 kb on - strandat 9.265 kb on - strandat 9.265 kb on - strandat 9.276 kb on + strandat 9.447 kb on - strandat 9.460 kb on + strandat 9.460 kb on + strandat 9.460 kb on + strandat 9.460 kb on + strandat 9.461 kb on - strandat 9.516 kb on + strandat 9.516 kb on + strandat 9.517 kb on - strandat 9.632 kb on + strandat 9.632 kb on + strandat 9.633 kb on - strandat 9.655 kb on + strandat 9.738 kb on + strand, within GFF6568at 9.738 kb on + strand, within GFF6568at 9.738 kb on + strand, within GFF6568at 9.738 kb on + strand, within GFF6568at 9.738 kb on + strand, within GFF6568at 9.738 kb on + strand, within GFF6568at 9.738 kb on + strand, within GFF6568at 9.738 kb on + strand, within GFF6568at 9.738 kb on + strand, within GFF6568at 9.739 kb on - strand, within GFF6568at 9.739 kb on - strand, within GFF6568at 9.753 kb on + strand, within GFF6568at 9.753 kb on + strand, within GFF6568at 9.753 kb on + strand, within GFF6568at 9.753 kb on + strand, within GFF6568at 9.754 kb on - strand, within GFF6568at 9.754 kb on - strand, within GFF6568at 9.754 kb on - strand, within GFF6568at 9.754 kb on - strand, within GFF6568at 9.754 kb on - strand, within GFF6568at 9.754 kb on - strand, within GFF6568at 9.754 kb on - strand, within GFF6568at 9.754 kb on - strand, within GFF6568at 9.822 kb on + strand, within GFF6568at 9.823 kb on - strand, within GFF6568at 9.823 kb on - strand, within GFF6568at 9.823 kb on - strand, within GFF6568at 9.900 kb on - strand, within GFF6568at 10.117 kb on + strand, within GFF6568at 10.117 kb on + strand, within GFF6568at 10.117 kb on + strand, within GFF6568at 10.117 kb on + strand, within GFF6568at 10.117 kb on + strand, within GFF6568at 10.117 kb on + strand, within GFF6568at 10.117 kb on + strand, within GFF6568at 10.117 kb on + strand, within GFF6568at 10.117 kb on + strand, within GFF6568at 10.118 kb on - strand, within GFF6568at 10.118 kb on - strand, within GFF6568at 10.118 kb on - strand, within GFF6568at 10.118 kb on - strand, within GFF6568at 10.118 kb on - strand, within GFF6568at 10.118 kb on - strand, within GFF6568at 10.118 kb on - strand, within GFF6568at 10.118 kb on - strand, within GFF6568at 10.210 kb on + strand, within GFF6568at 10.211 kb on - strand, within GFF6568at 10.249 kb on + strand, within GFF6568at 10.249 kb on + strand, within GFF6568at 10.249 kb on + strand, within GFF6568at 10.249 kb on + strand, within GFF6568at 10.250 kb on - strand, within GFF6568at 10.250 kb on - strand, within GFF6568at 10.250 kb on - strand, within GFF6568

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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6,885 + GFF6566 0.73 +0.4
6,885 + GFF6566 0.73 -0.1
6,886 - GFF6566 0.73 +0.4
6,987 + GFF6566 0.77 -0.4
6,987 + GFF6566 0.77 +1.3
6,988 - GFF6566 0.77 +0.1
7,209 + GFF6566 0.86 -1.1
7,210 - GFF6566 0.86 +0.6
7,234 + GFF6566 0.86 -0.4
7,234 + GFF6566 0.86 +0.6
7,234 + GFF6566 0.86 -1.0
7,234 + GFF6566 0.86 -0.8
7,235 - GFF6566 0.86 +0.1
7,235 - GFF6566 0.86 +0.2
7,235 - GFF6566 0.86 -0.6
7,281 + GFF6566 0.88 -0.7
7,281 + GFF6566 0.88 +0.1
7,312 - GFF6566 0.89 +0.8
7,381 + -0.1
7,382 - -0.3
7,625 + +0.3
7,625 + +0.0
7,625 + -1.0
7,625 + +0.0
7,626 - -0.6
7,626 - -1.3
7,626 - -0.2
7,647 - -0.2
7,647 - -0.2
7,647 - +0.0
7,715 + -0.6
7,715 + -1.0
7,715 + -0.4
7,715 + +0.8
7,715 + -0.5
7,715 + -0.9
7,715 + -0.7
7,715 + -0.5
7,715 + -0.3
7,715 + +0.4
7,715 + -0.4
7,716 - +0.1
7,716 - -1.5
7,716 - -1.4
7,716 - -0.3
7,716 - +0.2
7,716 - -0.6
7,716 - -0.0
7,716 - +0.6
7,716 - -0.4
7,772 + GFF6567 0.11 +0.4
7,773 - GFF6567 0.11 -0.1
8,171 + GFF6567 0.35 -0.4
8,172 - GFF6567 0.35 -0.0
8,172 - GFF6567 0.35 -1.4
8,172 - GFF6567 0.35 +0.5
8,195 + GFF6567 0.36 -0.2
8,195 + GFF6567 0.36 -0.8
8,196 - GFF6567 0.36 +0.6
8,196 - GFF6567 0.36 +0.4
8,196 - GFF6567 0.36 -1.0
8,196 - GFF6567 0.36 -1.8
8,324 + GFF6567 0.44 -0.9
8,324 + GFF6567 0.44 +0.0
8,324 + GFF6567 0.44 +0.2
8,324 + GFF6567 0.44 +0.0
8,324 + GFF6567 0.44 +0.4
8,324 + GFF6567 0.44 -0.8
8,324 + GFF6567 0.44 -0.6
8,324 + GFF6567 0.44 -1.0
8,324 + GFF6567 0.44 -0.3
8,324 + GFF6567 0.44 +0.6
8,324 + GFF6567 0.44 -1.9
8,325 - GFF6567 0.44 +0.3
8,325 - GFF6567 0.44 -2.0
8,325 - GFF6567 0.44 -0.9
8,325 - GFF6567 0.44 -0.4
8,325 - GFF6567 0.44 +0.6
8,325 - GFF6567 0.44 -1.0
8,325 - GFF6567 0.44 +0.1
8,325 - GFF6567 0.44 -0.9
8,325 - GFF6567 0.44 -0.6
8,325 - GFF6567 0.44 -1.1
8,360 + GFF6567 0.46 -1.0
8,361 - GFF6567 0.46 -0.1
8,609 + GFF6567 0.61 -0.6
8,610 - GFF6567 0.61 -0.0
8,610 - GFF6567 0.61 -0.4
9,264 + -0.3
9,264 + +0.1
9,264 + +0.6
9,264 + +1.7
9,264 + +0.1
9,264 + -1.2
9,264 + -0.2
9,264 + -0.4
9,264 + -0.4
9,265 - -0.8
9,265 - +0.3
9,265 - +0.8
9,265 - -0.5
9,265 - -0.0
9,276 + +0.2
9,447 - -0.2
9,460 + -0.9
9,460 + -0.8
9,460 + +0.3
9,460 + +0.6
9,461 - -0.2
9,516 + -0.9
9,516 + -0.8
9,517 - -0.9
9,632 + +1.0
9,632 + -1.3
9,633 - -0.4
9,655 + -0.5
9,738 + GFF6568 0.14 -1.6
9,738 + GFF6568 0.14 -0.6
9,738 + GFF6568 0.14 -0.8
9,738 + GFF6568 0.14 -1.2
9,738 + GFF6568 0.14 -1.4
9,738 + GFF6568 0.14 +2.4
9,738 + GFF6568 0.14 +0.6
9,738 + GFF6568 0.14 -0.4
9,738 + GFF6568 0.14 +0.4
9,739 - GFF6568 0.14 +1.6
9,739 - GFF6568 0.14 -2.7
9,753 + GFF6568 0.15 -0.4
9,753 + GFF6568 0.15 +1.0
9,753 + GFF6568 0.15 +1.0
9,753 + GFF6568 0.15 -0.2
9,754 - GFF6568 0.15 +1.9
9,754 - GFF6568 0.15 -0.8
9,754 - GFF6568 0.15 -0.3
9,754 - GFF6568 0.15 -0.5
9,754 - GFF6568 0.15 +0.4
9,754 - GFF6568 0.15 -2.1
9,754 - GFF6568 0.15 -0.8
9,754 - GFF6568 0.15 -0.9
9,822 + GFF6568 0.21 -0.2
9,823 - GFF6568 0.21 -0.5
9,823 - GFF6568 0.21 +0.2
9,823 - GFF6568 0.21 -1.4
9,900 - GFF6568 0.28 -0.5
10,117 + GFF6568 0.46 -1.3
10,117 + GFF6568 0.46 +1.6
10,117 + GFF6568 0.46 -0.2
10,117 + GFF6568 0.46 -0.1
10,117 + GFF6568 0.46 -0.6
10,117 + GFF6568 0.46 -1.8
10,117 + GFF6568 0.46 -0.5
10,117 + GFF6568 0.46 -1.0
10,117 + GFF6568 0.46 -1.3
10,118 - GFF6568 0.46 +0.3
10,118 - GFF6568 0.46 -1.2
10,118 - GFF6568 0.46 -1.0
10,118 - GFF6568 0.46 +0.1
10,118 - GFF6568 0.46 -0.8
10,118 - GFF6568 0.46 -0.4
10,118 - GFF6568 0.46 -0.2
10,118 - GFF6568 0.46 +0.9
10,210 + GFF6568 0.54 -0.4
10,211 - GFF6568 0.54 -1.4
10,249 + GFF6568 0.57 -0.4
10,249 + GFF6568 0.57 -0.4
10,249 + GFF6568 0.57 +0.3
10,249 + GFF6568 0.57 +0.6
10,250 - GFF6568 0.57 -1.1
10,250 - GFF6568 0.57 -0.5
10,250 - GFF6568 0.57 +0.2

Or see this region's nucleotide sequence