Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5779 and GFF5780 are separated by 6 nucleotides GFF5780 and GFF5781 are separated by 219 nucleotides
GFF5779 - L-idonate 5-dehydrogenase (EC 1.1.1.264), at 153,694 to 154,758
GFF5779
GFF5780 - Positive regulator of L-idonate catabolism, at 154,765 to 155,775
GFF5780
GFF5781 - Transcriptional regulator, LysR family, at 155,995 to 156,894
GFF5781
Position (kb) 154
155
156 Strain fitness (log2 ratio) -2
-1
0
1
2 at 153.785 kb on + strand at 153.785 kb on + strand at 153.785 kb on + strand at 153.786 kb on - strand at 153.786 kb on - strand at 153.786 kb on - strand at 153.786 kb on - strand at 153.832 kb on + strand, within GFF5779 at 153.832 kb on + strand, within GFF5779 at 153.833 kb on - strand, within GFF5779 at 153.833 kb on - strand, within GFF5779 at 154.039 kb on + strand, within GFF5779 at 154.039 kb on + strand, within GFF5779 at 154.039 kb on + strand, within GFF5779 at 154.040 kb on - strand, within GFF5779 at 154.040 kb on - strand, within GFF5779 at 154.393 kb on + strand, within GFF5779 at 154.653 kb on + strand at 154.654 kb on - strand at 155.108 kb on + strand, within GFF5780 at 155.486 kb on + strand, within GFF5780 at 155.639 kb on + strand, within GFF5780 at 155.639 kb on + strand, within GFF5780 at 155.639 kb on + strand, within GFF5780 at 155.640 kb on - strand, within GFF5780 at 155.640 kb on - strand, within GFF5780 at 155.640 kb on - strand, within GFF5780 at 155.640 kb on - strand, within GFF5780 at 155.640 kb on - strand, within GFF5780 at 155.640 kb on - strand, within GFF5780 at 155.640 kb on - strand, within GFF5780 at 155.640 kb on - strand, within GFF5780 at 155.974 kb on + strand at 155.974 kb on + strand at 155.975 kb on - strand at 155.975 kb on - strand at 155.975 kb on - strand at 155.975 kb on - strand at 155.975 kb on - strand at 156.527 kb on + strand, within GFF5781 at 156.527 kb on + strand, within GFF5781 at 156.528 kb on - strand, within GFF5781 at 156.528 kb on - strand, within GFF5781 at 156.528 kb on - strand, within GFF5781 at 156.680 kb on + strand, within GFF5781 at 156.680 kb on + strand, within GFF5781 at 156.681 kb on - strand, within GFF5781 at 156.681 kb on - strand, within GFF5781
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 153,785 + +0.3 153,785 + +0.3 153,785 + -0.3 153,786 - +0.2 153,786 - +0.8 153,786 - -0.4 153,786 - -1.0 153,832 + GFF5779 0.13 -0.5 153,832 + GFF5779 0.13 -0.4 153,833 - GFF5779 0.13 +1.8 153,833 - GFF5779 0.13 +2.3 154,039 + GFF5779 0.32 +0.7 154,039 + GFF5779 0.32 -0.2 154,039 + GFF5779 0.32 -0.9 154,040 - GFF5779 0.32 +0.6 154,040 - GFF5779 0.32 +1.2 154,393 + GFF5779 0.66 +0.1 154,653 + -0.4 154,654 - -1.4 155,108 + GFF5780 0.34 -0.8 155,486 + GFF5780 0.71 -1.4 155,639 + GFF5780 0.86 -0.2 155,639 + GFF5780 0.86 -0.4 155,639 + GFF5780 0.86 +0.9 155,640 - GFF5780 0.87 -0.2 155,640 - GFF5780 0.87 -0.6 155,640 - GFF5780 0.87 +0.2 155,640 - GFF5780 0.87 -0.7 155,640 - GFF5780 0.87 -1.2 155,640 - GFF5780 0.87 +0.8 155,640 - GFF5780 0.87 -1.3 155,640 - GFF5780 0.87 -0.4 155,974 + +0.3 155,974 + +1.5 155,975 - -0.4 155,975 - +0.9 155,975 - -0.6 155,975 - +0.2 155,975 - +0.2 156,527 + GFF5781 0.59 +0.1 156,527 + GFF5781 0.59 -0.2 156,528 - GFF5781 0.59 -0.3 156,528 - GFF5781 0.59 -0.2 156,528 - GFF5781 0.59 +0.3 156,680 + GFF5781 0.76 +0.6 156,680 + GFF5781 0.76 -1.8 156,681 - GFF5781 0.76 -0.2 156,681 - GFF5781 0.76 -1.3
Or see this region's nucleotide sequence