Strain Fitness in Variovorax sp. SCN45 around GFF5054

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5052 and GFF5053 overlap by 4 nucleotidesGFF5053 and GFF5054 are separated by 59 nucleotidesGFF5054 and GFF5055 overlap by 4 nucleotidesGFF5055 and GFF5056 are separated by 22 nucleotides GFF5052 - FAD-dependent oxidoreductase SPO0682, at 152,900 to 154,540 GFF5052 GFF5053 - Uncharacterized protein SPO0681, at 154,537 to 154,749 GFF5053 GFF5054 - Homogentisate 1,2-dioxygenase (EC 1.13.11.5), at 154,809 to 156,119 GFF5054 GFF5055 - BUG/TctC family periplasmic protein, at 156,116 to 157,090 GFF5055 GFF5056 - Fumarylacetoacetase (EC 3.7.1.2), at 157,113 to 158,378 GFF5056 Position (kb) 154 155 156 157Strain fitness (log2 ratio) -2 -1 0 1 2 3at 153.912 kb on + strand, within GFF5052at 153.912 kb on + strand, within GFF5052at 153.913 kb on - strand, within GFF5052at 153.959 kb on + strand, within GFF5052at 153.959 kb on + strand, within GFF5052at 153.959 kb on + strand, within GFF5052at 153.959 kb on + strand, within GFF5052at 153.959 kb on + strand, within GFF5052at 153.959 kb on + strand, within GFF5052at 153.959 kb on + strand, within GFF5052at 153.959 kb on + strand, within GFF5052at 153.959 kb on + strand, within GFF5052at 153.959 kb on + strand, within GFF5052at 153.959 kb on + strand, within GFF5052at 153.959 kb on + strand, within GFF5052at 153.959 kb on + strand, within GFF5052at 153.959 kb on + strand, within GFF5052at 153.959 kb on + strand, within GFF5052at 153.959 kb on + strand, within GFF5052at 153.959 kb on + strand, within GFF5052at 153.960 kb on - strand, within GFF5052at 153.960 kb on - strand, within GFF5052at 153.960 kb on - strand, within GFF5052at 153.960 kb on - strand, within GFF5052at 153.960 kb on - strand, within GFF5052at 153.960 kb on - strand, within GFF5052at 153.960 kb on - strand, within GFF5052at 153.960 kb on - strand, within GFF5052at 153.960 kb on - strand, within GFF5052at 153.960 kb on - strand, within GFF5052at 153.960 kb on - strand, within GFF5052at 153.960 kb on - strand, within GFF5052at 153.960 kb on - strand, within GFF5052at 153.960 kb on - strand, within GFF5052at 153.960 kb on - strand, within GFF5052at 153.960 kb on - strand, within GFF5052at 153.960 kb on - strand, within GFF5052at 153.960 kb on - strand, within GFF5052at 154.419 kb on - strandat 154.442 kb on + strandat 154.442 kb on + strandat 154.442 kb on + strandat 154.443 kb on - strandat 154.443 kb on - strandat 154.606 kb on + strand, within GFF5053at 154.606 kb on + strand, within GFF5053at 154.607 kb on - strand, within GFF5053at 154.802 kb on - strandat 154.842 kb on + strandat 154.843 kb on - strandat 154.843 kb on - strandat 154.866 kb on + strandat 154.866 kb on + strandat 154.866 kb on + strandat 154.866 kb on + strandat 154.866 kb on + strandat 154.867 kb on - strandat 154.867 kb on - strandat 154.867 kb on - strandat 154.938 kb on + strandat 154.938 kb on + strandat 154.938 kb on + strandat 154.939 kb on - strandat 154.939 kb on - strandat 154.939 kb on - strandat 154.939 kb on - strandat 154.939 kb on - strandat 155.004 kb on + strand, within GFF5054at 155.037 kb on + strand, within GFF5054at 155.038 kb on - strand, within GFF5054at 155.046 kb on + strand, within GFF5054at 155.046 kb on + strand, within GFF5054at 155.046 kb on + strand, within GFF5054at 155.046 kb on + strand, within GFF5054at 155.047 kb on - strand, within GFF5054at 155.047 kb on - strand, within GFF5054at 155.047 kb on - strand, within GFF5054at 155.047 kb on - strand, within GFF5054at 155.047 kb on - strand, within GFF5054at 155.223 kb on + strand, within GFF5054at 155.223 kb on + strand, within GFF5054at 155.223 kb on + strand, within GFF5054at 155.223 kb on + strand, within GFF5054at 155.223 kb on + strand, within GFF5054at 155.223 kb on + strand, within GFF5054at 155.224 kb on - strand, within GFF5054at 155.224 kb on - strand, within GFF5054at 155.224 kb on - strand, within GFF5054at 155.224 kb on - strand, within GFF5054at 155.224 kb on - strand, within GFF5054at 155.224 kb on - strand, within GFF5054at 155.224 kb on - strand, within GFF5054at 155.415 kb on + strand, within GFF5054at 155.415 kb on + strand, within GFF5054at 155.416 kb on - strand, within GFF5054at 155.430 kb on + strand, within GFF5054at 155.431 kb on - strand, within GFF5054at 155.431 kb on - strand, within GFF5054at 155.431 kb on - strand, within GFF5054at 155.431 kb on - strand, within GFF5054at 155.541 kb on + strand, within GFF5054at 155.542 kb on - strand, within GFF5054at 155.644 kb on - strand, within GFF5054at 155.841 kb on + strand, within GFF5054at 155.862 kb on + strand, within GFF5054at 155.863 kb on - strand, within GFF5054at 155.863 kb on - strand, within GFF5054at 155.863 kb on - strand, within GFF5054at 155.863 kb on - strand, within GFF5054at 156.075 kb on + strandat 156.075 kb on + strandat 156.076 kb on - strandat 156.198 kb on - strandat 156.198 kb on - strandat 156.230 kb on + strand, within GFF5055at 156.230 kb on + strand, within GFF5055at 156.230 kb on + strand, within GFF5055at 156.230 kb on + strand, within GFF5055at 156.230 kb on + strand, within GFF5055at 156.230 kb on + strand, within GFF5055at 156.231 kb on - strand, within GFF5055at 156.231 kb on - strand, within GFF5055at 156.231 kb on - strand, within GFF5055at 156.231 kb on - strand, within GFF5055at 156.380 kb on + strand, within GFF5055at 156.380 kb on + strand, within GFF5055at 156.380 kb on + strand, within GFF5055at 156.381 kb on - strand, within GFF5055at 156.381 kb on - strand, within GFF5055at 156.381 kb on - strand, within GFF5055at 156.381 kb on - strand, within GFF5055at 156.381 kb on - strand, within GFF5055at 156.381 kb on - strand, within GFF5055at 156.431 kb on + strand, within GFF5055at 156.431 kb on + strand, within GFF5055at 156.431 kb on + strand, within GFF5055at 156.431 kb on + strand, within GFF5055at 156.431 kb on + strand, within GFF5055at 156.431 kb on + strand, within GFF5055at 156.431 kb on + strand, within GFF5055at 156.431 kb on + strand, within GFF5055at 156.432 kb on - strand, within GFF5055at 156.432 kb on - strand, within GFF5055at 156.432 kb on - strand, within GFF5055at 156.432 kb on - strand, within GFF5055at 156.432 kb on - strand, within GFF5055at 156.432 kb on - strand, within GFF5055at 156.432 kb on - strand, within GFF5055at 156.432 kb on - strand, within GFF5055at 156.581 kb on + strand, within GFF5055at 156.581 kb on + strand, within GFF5055at 156.582 kb on - strand, within GFF5055at 156.668 kb on + strand, within GFF5055at 156.668 kb on + strand, within GFF5055at 156.668 kb on + strand, within GFF5055at 156.668 kb on + strand, within GFF5055at 156.668 kb on + strand, within GFF5055at 156.668 kb on + strand, within GFF5055at 156.668 kb on + strand, within GFF5055at 156.668 kb on + strand, within GFF5055at 156.669 kb on - strand, within GFF5055at 156.669 kb on - strand, within GFF5055at 156.669 kb on - strand, within GFF5055at 156.669 kb on - strand, within GFF5055at 156.669 kb on - strand, within GFF5055at 156.755 kb on - strand, within GFF5055at 156.881 kb on + strand, within GFF5055at 156.881 kb on + strand, within GFF5055at 156.881 kb on + strand, within GFF5055at 156.882 kb on - strand, within GFF5055at 156.882 kb on - strand, within GFF5055at 156.882 kb on - strand, within GFF5055at 156.882 kb on - strand, within GFF5055at 157.040 kb on + strandat 157.040 kb on + strandat 157.040 kb on + strandat 157.041 kb on - strandat 157.041 kb on - strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.108 kb on + strandat 157.109 kb on - strandat 157.109 kb on - strandat 157.109 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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153,912 + GFF5052 0.62 +0.1
153,912 + GFF5052 0.62 +0.3
153,913 - GFF5052 0.62 +1.3
153,959 + GFF5052 0.65 +1.4
153,959 + GFF5052 0.65 -0.1
153,959 + GFF5052 0.65 -0.7
153,959 + GFF5052 0.65 +2.8
153,959 + GFF5052 0.65 +0.0
153,959 + GFF5052 0.65 +0.6
153,959 + GFF5052 0.65 -2.2
153,959 + GFF5052 0.65 +0.4
153,959 + GFF5052 0.65 +0.0
153,959 + GFF5052 0.65 -0.3
153,959 + GFF5052 0.65 -2.0
153,959 + GFF5052 0.65 +0.4
153,959 + GFF5052 0.65 -0.4
153,959 + GFF5052 0.65 -0.9
153,959 + GFF5052 0.65 -0.3
153,959 + GFF5052 0.65 -0.5
153,959 + GFF5052 0.65 -0.3
153,960 - GFF5052 0.65 +0.2
153,960 - GFF5052 0.65 +1.3
153,960 - GFF5052 0.65 -0.7
153,960 - GFF5052 0.65 -0.7
153,960 - GFF5052 0.65 +0.3
153,960 - GFF5052 0.65 -1.9
153,960 - GFF5052 0.65 -0.0
153,960 - GFF5052 0.65 -0.7
153,960 - GFF5052 0.65 -0.3
153,960 - GFF5052 0.65 -0.6
153,960 - GFF5052 0.65 +0.8
153,960 - GFF5052 0.65 +0.4
153,960 - GFF5052 0.65 -0.7
153,960 - GFF5052 0.65 +0.0
153,960 - GFF5052 0.65 +1.8
153,960 - GFF5052 0.65 +0.4
153,960 - GFF5052 0.65 -0.2
153,960 - GFF5052 0.65 -1.5
154,419 - +0.5
154,442 + +0.2
154,442 + -0.5
154,442 + +0.3
154,443 - -0.2
154,443 - -0.4
154,606 + GFF5053 0.32 -0.4
154,606 + GFF5053 0.32 -1.3
154,607 - GFF5053 0.33 +0.2
154,802 - -1.1
154,842 + -0.7
154,843 - -1.3
154,843 - -1.8
154,866 + -0.5
154,866 + +0.1
154,866 + +1.4
154,866 + +0.1
154,866 + -0.7
154,867 - +2.3
154,867 - +0.2
154,867 - +1.4
154,938 + -1.1
154,938 + -0.6
154,938 + -0.4
154,939 - -0.9
154,939 - -0.5
154,939 - +0.0
154,939 - -0.6
154,939 - +0.5
155,004 + GFF5054 0.15 +0.0
155,037 + GFF5054 0.17 -0.2
155,038 - GFF5054 0.17 +1.4
155,046 + GFF5054 0.18 +0.1
155,046 + GFF5054 0.18 +0.1
155,046 + GFF5054 0.18 +0.3
155,046 + GFF5054 0.18 -0.0
155,047 - GFF5054 0.18 -1.1
155,047 - GFF5054 0.18 +1.2
155,047 - GFF5054 0.18 -0.1
155,047 - GFF5054 0.18 +0.0
155,047 - GFF5054 0.18 +0.3
155,223 + GFF5054 0.32 +1.3
155,223 + GFF5054 0.32 +0.6
155,223 + GFF5054 0.32 -0.3
155,223 + GFF5054 0.32 +0.4
155,223 + GFF5054 0.32 +1.2
155,223 + GFF5054 0.32 -0.9
155,224 - GFF5054 0.32 +1.8
155,224 - GFF5054 0.32 -0.0
155,224 - GFF5054 0.32 -0.8
155,224 - GFF5054 0.32 -0.6
155,224 - GFF5054 0.32 +0.8
155,224 - GFF5054 0.32 -1.0
155,224 - GFF5054 0.32 +0.1
155,415 + GFF5054 0.46 -0.6
155,415 + GFF5054 0.46 -1.3
155,416 - GFF5054 0.46 -0.2
155,430 + GFF5054 0.47 +1.2
155,431 - GFF5054 0.47 -0.4
155,431 - GFF5054 0.47 -1.1
155,431 - GFF5054 0.47 +0.5
155,431 - GFF5054 0.47 +1.3
155,541 + GFF5054 0.56 -0.4
155,542 - GFF5054 0.56 +0.8
155,644 - GFF5054 0.64 -0.4
155,841 + GFF5054 0.79 +0.3
155,862 + GFF5054 0.80 +0.1
155,863 - GFF5054 0.80 -0.3
155,863 - GFF5054 0.80 -0.5
155,863 - GFF5054 0.80 +0.7
155,863 - GFF5054 0.80 +1.4
156,075 + -1.2
156,075 + -0.4
156,076 - +0.3
156,198 - -0.9
156,198 - +0.3
156,230 + GFF5055 0.12 -0.3
156,230 + GFF5055 0.12 +0.4
156,230 + GFF5055 0.12 +0.1
156,230 + GFF5055 0.12 +0.5
156,230 + GFF5055 0.12 -0.1
156,230 + GFF5055 0.12 -0.1
156,231 - GFF5055 0.12 -0.3
156,231 - GFF5055 0.12 +0.0
156,231 - GFF5055 0.12 -1.0
156,231 - GFF5055 0.12 -1.5
156,380 + GFF5055 0.27 -0.4
156,380 + GFF5055 0.27 +0.2
156,380 + GFF5055 0.27 +0.0
156,381 - GFF5055 0.27 +0.3
156,381 - GFF5055 0.27 +0.3
156,381 - GFF5055 0.27 -0.7
156,381 - GFF5055 0.27 +0.8
156,381 - GFF5055 0.27 +0.7
156,381 - GFF5055 0.27 -1.1
156,431 + GFF5055 0.32 +0.6
156,431 + GFF5055 0.32 -0.7
156,431 + GFF5055 0.32 +0.4
156,431 + GFF5055 0.32 +1.3
156,431 + GFF5055 0.32 +0.7
156,431 + GFF5055 0.32 -0.6
156,431 + GFF5055 0.32 +1.5
156,431 + GFF5055 0.32 -0.2
156,432 - GFF5055 0.32 +0.3
156,432 - GFF5055 0.32 +0.3
156,432 - GFF5055 0.32 -1.2
156,432 - GFF5055 0.32 -0.2
156,432 - GFF5055 0.32 -0.1
156,432 - GFF5055 0.32 -0.5
156,432 - GFF5055 0.32 -0.2
156,432 - GFF5055 0.32 -0.8
156,581 + GFF5055 0.48 -0.2
156,581 + GFF5055 0.48 +0.0
156,582 - GFF5055 0.48 -1.3
156,668 + GFF5055 0.57 -0.6
156,668 + GFF5055 0.57 +1.1
156,668 + GFF5055 0.57 -0.8
156,668 + GFF5055 0.57 +1.4
156,668 + GFF5055 0.57 +0.5
156,668 + GFF5055 0.57 +0.7
156,668 + GFF5055 0.57 +1.8
156,668 + GFF5055 0.57 +0.5
156,669 - GFF5055 0.57 -0.2
156,669 - GFF5055 0.57 +0.5
156,669 - GFF5055 0.57 +0.8
156,669 - GFF5055 0.57 +0.5
156,669 - GFF5055 0.57 +1.3
156,755 - GFF5055 0.66 -0.4
156,881 + GFF5055 0.78 -0.8
156,881 + GFF5055 0.78 -0.5
156,881 + GFF5055 0.78 -0.7
156,882 - GFF5055 0.79 -1.7
156,882 - GFF5055 0.79 +0.4
156,882 - GFF5055 0.79 +0.3
156,882 - GFF5055 0.79 -1.0
157,040 + -0.2
157,040 + +0.5
157,040 + -1.2
157,041 - -0.4
157,041 - +0.0
157,108 + -0.3
157,108 + +0.3
157,108 + -2.7
157,108 + -0.2
157,108 + -0.1
157,108 + -1.6
157,108 + -0.5
157,109 - -1.0
157,109 - -0.2
157,109 - +0.1

Or see this region's nucleotide sequence