Strain Fitness in Variovorax sp. SCN45 around GFF4986

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4985 and GFF4986 are separated by 53 nucleotidesGFF4986 and GFF4987 are separated by 30 nucleotidesGFF4987 and GFF4988 are separated by 63 nucleotides GFF4985 - Tricarboxylate transport protein TctC, at 85,593 to 86,579 GFF4985 GFF4986 - 3-hydroxybenzoate 6-monooxygenase (EC 1.14.13.24), at 86,633 to 87,856 GFF4986 GFF4987 - 3-fumarylpyruvate hydrolase (EC 3.7.1.20), at 87,887 to 88,591 GFF4987 GFF4988 - Gentisate 1,2-dioxygenase (EC 1.13.11.4), at 88,655 to 89,716 GFF4988 Position (kb) 86 87 88Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 85.633 kb on + strandat 85.633 kb on + strandat 85.633 kb on + strandat 85.634 kb on - strandat 85.634 kb on - strandat 85.909 kb on + strand, within GFF4985at 85.909 kb on + strand, within GFF4985at 85.909 kb on + strand, within GFF4985at 85.909 kb on + strand, within GFF4985at 85.910 kb on - strand, within GFF4985at 85.910 kb on - strand, within GFF4985at 85.930 kb on + strand, within GFF4985at 85.930 kb on + strand, within GFF4985at 85.930 kb on + strand, within GFF4985at 85.930 kb on + strand, within GFF4985at 85.930 kb on + strand, within GFF4985at 85.930 kb on + strand, within GFF4985at 85.930 kb on + strand, within GFF4985at 85.930 kb on + strand, within GFF4985at 85.931 kb on - strand, within GFF4985at 85.931 kb on - strand, within GFF4985at 85.931 kb on - strand, within GFF4985at 85.931 kb on - strand, within GFF4985at 85.931 kb on - strand, within GFF4985at 85.931 kb on - strand, within GFF4985at 85.931 kb on - strand, within GFF4985at 85.931 kb on - strand, within GFF4985at 85.931 kb on - strand, within GFF4985at 85.931 kb on - strand, within GFF4985at 85.931 kb on - strand, within GFF4985at 85.996 kb on + strand, within GFF4985at 85.996 kb on + strand, within GFF4985at 85.996 kb on + strand, within GFF4985at 85.997 kb on - strand, within GFF4985at 85.997 kb on - strand, within GFF4985at 86.104 kb on + strand, within GFF4985at 86.105 kb on - strand, within GFF4985at 86.105 kb on - strand, within GFF4985at 86.257 kb on + strand, within GFF4985at 86.257 kb on + strand, within GFF4985at 86.257 kb on + strand, within GFF4985at 86.257 kb on + strand, within GFF4985at 86.257 kb on + strand, within GFF4985at 86.257 kb on + strand, within GFF4985at 86.257 kb on + strand, within GFF4985at 86.257 kb on + strand, within GFF4985at 86.258 kb on - strand, within GFF4985at 86.258 kb on - strand, within GFF4985at 86.258 kb on - strand, within GFF4985at 86.258 kb on - strand, within GFF4985at 86.258 kb on - strand, within GFF4985at 86.258 kb on - strand, within GFF4985at 86.258 kb on - strand, within GFF4985at 86.258 kb on - strand, within GFF4985at 86.309 kb on - strand, within GFF4985at 86.309 kb on - strand, within GFF4985at 86.309 kb on - strand, within GFF4985at 86.609 kb on + strandat 86.609 kb on + strandat 86.609 kb on + strandat 86.609 kb on + strandat 86.691 kb on + strandat 86.691 kb on + strandat 86.691 kb on + strandat 86.691 kb on + strandat 86.691 kb on + strandat 86.691 kb on + strandat 86.691 kb on + strandat 86.692 kb on - strandat 86.692 kb on - strandat 86.712 kb on + strandat 86.712 kb on + strandat 86.712 kb on + strandat 86.712 kb on + strandat 86.713 kb on - strandat 86.713 kb on - strandat 86.713 kb on - strandat 86.713 kb on - strandat 86.713 kb on - strandat 86.713 kb on - strandat 86.781 kb on + strand, within GFF4986at 86.781 kb on + strand, within GFF4986at 86.781 kb on + strand, within GFF4986at 86.781 kb on + strand, within GFF4986at 86.782 kb on - strand, within GFF4986at 86.782 kb on - strand, within GFF4986at 86.782 kb on - strand, within GFF4986at 86.782 kb on - strand, within GFF4986at 86.782 kb on - strand, within GFF4986at 86.782 kb on - strand, within GFF4986at 86.847 kb on + strand, within GFF4986at 86.848 kb on - strand, within GFF4986at 86.848 kb on - strand, within GFF4986at 86.946 kb on + strand, within GFF4986at 86.946 kb on + strand, within GFF4986at 86.947 kb on - strand, within GFF4986at 86.947 kb on - strand, within GFF4986at 86.947 kb on - strand, within GFF4986at 87.096 kb on + strand, within GFF4986at 87.096 kb on + strand, within GFF4986at 87.096 kb on + strand, within GFF4986at 87.097 kb on - strand, within GFF4986at 87.097 kb on - strand, within GFF4986at 87.097 kb on - strand, within GFF4986at 87.097 kb on - strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.177 kb on + strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.178 kb on - strand, within GFF4986at 87.202 kb on - strand, within GFF4986at 87.202 kb on - strand, within GFF4986at 87.285 kb on - strand, within GFF4986at 87.294 kb on + strand, within GFF4986at 87.294 kb on + strand, within GFF4986at 87.295 kb on - strand, within GFF4986at 87.295 kb on - strand, within GFF4986at 87.541 kb on - strand, within GFF4986at 87.541 kb on - strand, within GFF4986at 87.541 kb on - strand, within GFF4986at 87.933 kb on + strandat 88.260 kb on + strand, within GFF4987at 88.260 kb on + strand, within GFF4987at 88.260 kb on + strand, within GFF4987at 88.260 kb on + strand, within GFF4987at 88.260 kb on + strand, within GFF4987at 88.260 kb on + strand, within GFF4987at 88.260 kb on + strand, within GFF4987at 88.260 kb on + strand, within GFF4987at 88.261 kb on - strand, within GFF4987at 88.261 kb on - strand, within GFF4987at 88.261 kb on - strand, within GFF4987at 88.261 kb on - strand, within GFF4987at 88.261 kb on - strand, within GFF4987at 88.261 kb on - strand, within GFF4987at 88.261 kb on - strand, within GFF4987at 88.261 kb on - strand, within GFF4987at 88.341 kb on + strand, within GFF4987at 88.341 kb on + strand, within GFF4987at 88.341 kb on + strand, within GFF4987at 88.341 kb on + strand, within GFF4987at 88.342 kb on - strand, within GFF4987at 88.342 kb on - strand, within GFF4987at 88.342 kb on - strand, within GFF4987at 88.342 kb on - strand, within GFF4987at 88.342 kb on - strand, within GFF4987at 88.347 kb on + strand, within GFF4987at 88.347 kb on + strand, within GFF4987at 88.347 kb on + strand, within GFF4987at 88.347 kb on + strand, within GFF4987at 88.347 kb on + strand, within GFF4987at 88.347 kb on + strand, within GFF4987at 88.347 kb on + strand, within GFF4987at 88.348 kb on - strand, within GFF4987at 88.348 kb on - strand, within GFF4987at 88.348 kb on - strand, within GFF4987at 88.348 kb on - strand, within GFF4987at 88.348 kb on - strand, within GFF4987at 88.348 kb on - strand, within GFF4987at 88.348 kb on - strand, within GFF4987at 88.491 kb on + strand, within GFF4987at 88.492 kb on - strand, within GFF4987at 88.492 kb on - strand, within GFF4987at 88.492 kb on - strand, within GFF4987at 88.492 kb on - strand, within GFF4987at 88.492 kb on - strand, within GFF4987at 88.509 kb on + strand, within GFF4987at 88.509 kb on + strand, within GFF4987

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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85,633 + +0.3
85,633 + -1.0
85,633 + -0.2
85,634 - -0.6
85,634 - -1.1
85,909 + GFF4985 0.32 -0.0
85,909 + GFF4985 0.32 -1.0
85,909 + GFF4985 0.32 -0.2
85,909 + GFF4985 0.32 +1.0
85,910 - GFF4985 0.32 -0.3
85,910 - GFF4985 0.32 -1.7
85,930 + GFF4985 0.34 -0.4
85,930 + GFF4985 0.34 -0.2
85,930 + GFF4985 0.34 -2.9
85,930 + GFF4985 0.34 -0.5
85,930 + GFF4985 0.34 -0.3
85,930 + GFF4985 0.34 +0.4
85,930 + GFF4985 0.34 -1.2
85,930 + GFF4985 0.34 +0.5
85,931 - GFF4985 0.34 -1.0
85,931 - GFF4985 0.34 -0.7
85,931 - GFF4985 0.34 -0.2
85,931 - GFF4985 0.34 -1.4
85,931 - GFF4985 0.34 -0.2
85,931 - GFF4985 0.34 -0.3
85,931 - GFF4985 0.34 -1.3
85,931 - GFF4985 0.34 +1.0
85,931 - GFF4985 0.34 -0.4
85,931 - GFF4985 0.34 -0.2
85,931 - GFF4985 0.34 +0.2
85,996 + GFF4985 0.41 +0.3
85,996 + GFF4985 0.41 -0.5
85,996 + GFF4985 0.41 +1.2
85,997 - GFF4985 0.41 +0.1
85,997 - GFF4985 0.41 -0.3
86,104 + GFF4985 0.52 -1.3
86,105 - GFF4985 0.52 -0.7
86,105 - GFF4985 0.52 -0.1
86,257 + GFF4985 0.67 -0.5
86,257 + GFF4985 0.67 -0.4
86,257 + GFF4985 0.67 -0.1
86,257 + GFF4985 0.67 +1.8
86,257 + GFF4985 0.67 +1.5
86,257 + GFF4985 0.67 +0.1
86,257 + GFF4985 0.67 -1.4
86,257 + GFF4985 0.67 +2.1
86,258 - GFF4985 0.67 -0.7
86,258 - GFF4985 0.67 -1.5
86,258 - GFF4985 0.67 +0.4
86,258 - GFF4985 0.67 +0.0
86,258 - GFF4985 0.67 +0.0
86,258 - GFF4985 0.67 -0.7
86,258 - GFF4985 0.67 -0.2
86,258 - GFF4985 0.67 -1.2
86,309 - GFF4985 0.73 -2.2
86,309 - GFF4985 0.73 -0.2
86,309 - GFF4985 0.73 +0.8
86,609 + -0.1
86,609 + -1.2
86,609 + -1.7
86,609 + -0.2
86,691 + -1.6
86,691 + -0.1
86,691 + -0.2
86,691 + -0.0
86,691 + +0.0
86,691 + -0.7
86,691 + -1.3
86,692 - -0.6
86,692 - +0.8
86,712 + -2.1
86,712 + -0.3
86,712 + -1.1
86,712 + -1.8
86,713 - -1.7
86,713 - -0.6
86,713 - +0.8
86,713 - -0.6
86,713 - -0.2
86,713 - -1.4
86,781 + GFF4986 0.12 +0.6
86,781 + GFF4986 0.12 -0.5
86,781 + GFF4986 0.12 -1.2
86,781 + GFF4986 0.12 -0.7
86,782 - GFF4986 0.12 -0.9
86,782 - GFF4986 0.12 -1.0
86,782 - GFF4986 0.12 -0.5
86,782 - GFF4986 0.12 +0.3
86,782 - GFF4986 0.12 -1.6
86,782 - GFF4986 0.12 -0.3
86,847 + GFF4986 0.17 +1.2
86,848 - GFF4986 0.18 +0.1
86,848 - GFF4986 0.18 -0.3
86,946 + GFF4986 0.26 -1.1
86,946 + GFF4986 0.26 -1.0
86,947 - GFF4986 0.26 +0.8
86,947 - GFF4986 0.26 -1.2
86,947 - GFF4986 0.26 -1.7
87,096 + GFF4986 0.38 +0.2
87,096 + GFF4986 0.38 -0.9
87,096 + GFF4986 0.38 +0.3
87,097 - GFF4986 0.38 -0.3
87,097 - GFF4986 0.38 +0.9
87,097 - GFF4986 0.38 -0.0
87,097 - GFF4986 0.38 +0.0
87,177 + GFF4986 0.44 -0.5
87,177 + GFF4986 0.44 -1.6
87,177 + GFF4986 0.44 -0.3
87,177 + GFF4986 0.44 -0.9
87,177 + GFF4986 0.44 +0.1
87,177 + GFF4986 0.44 +0.5
87,177 + GFF4986 0.44 -0.5
87,177 + GFF4986 0.44 -0.5
87,177 + GFF4986 0.44 +1.8
87,177 + GFF4986 0.44 +0.3
87,177 + GFF4986 0.44 -0.8
87,177 + GFF4986 0.44 -0.1
87,178 - GFF4986 0.45 -0.5
87,178 - GFF4986 0.45 -0.9
87,178 - GFF4986 0.45 -0.4
87,178 - GFF4986 0.45 -0.4
87,178 - GFF4986 0.45 -1.8
87,178 - GFF4986 0.45 -1.6
87,178 - GFF4986 0.45 -0.6
87,178 - GFF4986 0.45 -0.1
87,178 - GFF4986 0.45 -0.6
87,202 - GFF4986 0.46 -1.1
87,202 - GFF4986 0.46 +0.8
87,285 - GFF4986 0.53 -0.6
87,294 + GFF4986 0.54 +0.0
87,294 + GFF4986 0.54 -0.5
87,295 - GFF4986 0.54 -0.6
87,295 - GFF4986 0.54 -0.9
87,541 - GFF4986 0.74 -0.8
87,541 - GFF4986 0.74 +0.5
87,541 - GFF4986 0.74 -0.0
87,933 + -1.7
88,260 + GFF4987 0.53 -0.3
88,260 + GFF4987 0.53 -0.3
88,260 + GFF4987 0.53 -0.7
88,260 + GFF4987 0.53 -0.2
88,260 + GFF4987 0.53 -0.7
88,260 + GFF4987 0.53 -0.1
88,260 + GFF4987 0.53 -0.6
88,260 + GFF4987 0.53 +0.0
88,261 - GFF4987 0.53 -0.5
88,261 - GFF4987 0.53 -0.7
88,261 - GFF4987 0.53 +0.1
88,261 - GFF4987 0.53 -1.3
88,261 - GFF4987 0.53 +0.3
88,261 - GFF4987 0.53 +0.3
88,261 - GFF4987 0.53 -0.6
88,261 - GFF4987 0.53 -0.2
88,341 + GFF4987 0.64 -0.5
88,341 + GFF4987 0.64 -0.9
88,341 + GFF4987 0.64 -2.0
88,341 + GFF4987 0.64 +0.4
88,342 - GFF4987 0.65 -0.3
88,342 - GFF4987 0.65 -0.4
88,342 - GFF4987 0.65 -0.5
88,342 - GFF4987 0.65 -0.7
88,342 - GFF4987 0.65 +0.0
88,347 + GFF4987 0.65 -0.2
88,347 + GFF4987 0.65 -0.9
88,347 + GFF4987 0.65 -0.0
88,347 + GFF4987 0.65 -0.4
88,347 + GFF4987 0.65 +0.5
88,347 + GFF4987 0.65 -0.5
88,347 + GFF4987 0.65 +0.3
88,348 - GFF4987 0.65 +0.5
88,348 - GFF4987 0.65 +0.2
88,348 - GFF4987 0.65 -0.4
88,348 - GFF4987 0.65 -0.7
88,348 - GFF4987 0.65 -1.1
88,348 - GFF4987 0.65 -0.3
88,348 - GFF4987 0.65 -1.6
88,491 + GFF4987 0.86 -0.3
88,492 - GFF4987 0.86 -2.0
88,492 - GFF4987 0.86 -1.5
88,492 - GFF4987 0.86 +0.3
88,492 - GFF4987 0.86 +0.5
88,492 - GFF4987 0.86 -0.3
88,509 + GFF4987 0.88 -0.4
88,509 + GFF4987 0.88 -0.9

Or see this region's nucleotide sequence