Strain Fitness in Variovorax sp. SCN45 around GFF4945

Experiment: M9 with Supernatant from Cyptococcus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4944 and GFF4945 are separated by 24 nucleotidesGFF4945 and GFF4946 overlap by 4 nucleotides GFF4944 - Excinuclease ABC subunit A, at 36,537 to 39,635 GFF4944 GFF4945 - probable GntR-family transcriptional regulator, at 39,660 to 40,415 GFF4945 GFF4946 - Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3), at 40,412 to 42,181 GFF4946 Position (kb) 39 40 41Strain fitness (log2 ratio) -2 -1 0 1 2at 38.778 kb on + strand, within GFF4944at 38.778 kb on + strand, within GFF4944at 38.779 kb on - strand, within GFF4944at 38.779 kb on - strand, within GFF4944at 38.802 kb on + strand, within GFF4944at 38.853 kb on + strand, within GFF4944at 38.854 kb on - strand, within GFF4944at 38.854 kb on - strand, within GFF4944at 38.922 kb on + strand, within GFF4944at 38.922 kb on + strand, within GFF4944at 38.922 kb on + strand, within GFF4944at 38.922 kb on + strand, within GFF4944at 38.922 kb on + strand, within GFF4944at 38.922 kb on + strand, within GFF4944at 38.923 kb on - strand, within GFF4944at 38.923 kb on - strand, within GFF4944at 38.923 kb on - strand, within GFF4944at 38.988 kb on + strand, within GFF4944at 39.090 kb on + strand, within GFF4944at 39.090 kb on + strand, within GFF4944at 39.090 kb on + strand, within GFF4944at 39.090 kb on + strand, within GFF4944at 39.090 kb on + strand, within GFF4944at 39.090 kb on + strand, within GFF4944at 39.090 kb on + strand, within GFF4944at 39.090 kb on + strand, within GFF4944at 39.090 kb on + strand, within GFF4944at 39.091 kb on - strand, within GFF4944at 39.091 kb on - strand, within GFF4944at 39.091 kb on - strand, within GFF4944at 39.091 kb on - strand, within GFF4944at 39.091 kb on - strand, within GFF4944at 39.091 kb on - strand, within GFF4944at 39.123 kb on + strand, within GFF4944at 39.123 kb on + strand, within GFF4944at 39.124 kb on - strand, within GFF4944at 39.124 kb on - strand, within GFF4944at 39.150 kb on + strand, within GFF4944at 39.150 kb on + strand, within GFF4944at 39.150 kb on + strand, within GFF4944at 39.150 kb on + strand, within GFF4944at 39.150 kb on + strand, within GFF4944at 39.151 kb on - strand, within GFF4944at 39.151 kb on - strand, within GFF4944at 39.151 kb on - strand, within GFF4944at 39.270 kb on + strand, within GFF4944at 39.270 kb on + strand, within GFF4944at 39.270 kb on + strand, within GFF4944at 39.270 kb on + strand, within GFF4944at 39.270 kb on + strand, within GFF4944at 39.271 kb on - strand, within GFF4944at 39.271 kb on - strand, within GFF4944at 39.271 kb on - strand, within GFF4944at 39.372 kb on + strandat 39.372 kb on + strandat 39.372 kb on + strandat 39.372 kb on + strandat 39.372 kb on + strandat 39.372 kb on + strandat 39.372 kb on + strandat 39.372 kb on + strandat 39.372 kb on + strandat 39.373 kb on - strandat 39.373 kb on - strandat 39.373 kb on - strandat 39.373 kb on - strandat 39.616 kb on - strandat 39.746 kb on - strand, within GFF4945at 39.746 kb on - strand, within GFF4945at 39.865 kb on + strand, within GFF4945at 39.887 kb on - strand, within GFF4945at 39.887 kb on - strand, within GFF4945at 39.887 kb on - strand, within GFF4945at 40.198 kb on + strand, within GFF4945at 40.198 kb on + strand, within GFF4945at 40.198 kb on + strand, within GFF4945at 40.199 kb on - strand, within GFF4945at 40.199 kb on - strand, within GFF4945at 40.698 kb on + strand, within GFF4946at 40.698 kb on + strand, within GFF4946at 40.699 kb on - strand, within GFF4946at 40.699 kb on - strand, within GFF4946at 40.699 kb on - strand, within GFF4946at 40.699 kb on - strand, within GFF4946at 40.699 kb on - strand, within GFF4946at 41.133 kb on + strand, within GFF4946at 41.133 kb on + strand, within GFF4946at 41.133 kb on + strand, within GFF4946at 41.133 kb on + strand, within GFF4946at 41.133 kb on + strand, within GFF4946at 41.134 kb on - strand, within GFF4946at 41.134 kb on - strand, within GFF4946at 41.134 kb on - strand, within GFF4946at 41.134 kb on - strand, within GFF4946at 41.139 kb on + strand, within GFF4946at 41.139 kb on + strand, within GFF4946at 41.139 kb on + strand, within GFF4946at 41.139 kb on + strand, within GFF4946at 41.139 kb on + strand, within GFF4946at 41.139 kb on + strand, within GFF4946at 41.139 kb on + strand, within GFF4946at 41.139 kb on + strand, within GFF4946at 41.139 kb on + strand, within GFF4946at 41.139 kb on + strand, within GFF4946at 41.140 kb on - strand, within GFF4946at 41.140 kb on - strand, within GFF4946at 41.140 kb on - strand, within GFF4946at 41.140 kb on - strand, within GFF4946at 41.202 kb on + strand, within GFF4946at 41.203 kb on - strand, within GFF4946at 41.292 kb on + strand, within GFF4946at 41.328 kb on + strand, within GFF4946at 41.328 kb on + strand, within GFF4946

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
remove
38,778 + GFF4944 0.72 +1.1
38,778 + GFF4944 0.72 -0.7
38,779 - GFF4944 0.72 -0.4
38,779 - GFF4944 0.72 -0.6
38,802 + GFF4944 0.73 -0.1
38,853 + GFF4944 0.75 +0.1
38,854 - GFF4944 0.75 +0.2
38,854 - GFF4944 0.75 -0.5
38,922 + GFF4944 0.77 +1.0
38,922 + GFF4944 0.77 +0.4
38,922 + GFF4944 0.77 +0.3
38,922 + GFF4944 0.77 +1.0
38,922 + GFF4944 0.77 -0.2
38,922 + GFF4944 0.77 +0.2
38,923 - GFF4944 0.77 +0.6
38,923 - GFF4944 0.77 +0.6
38,923 - GFF4944 0.77 -1.0
38,988 + GFF4944 0.79 +0.4
39,090 + GFF4944 0.82 +0.6
39,090 + GFF4944 0.82 -0.1
39,090 + GFF4944 0.82 -0.9
39,090 + GFF4944 0.82 -1.0
39,090 + GFF4944 0.82 -1.0
39,090 + GFF4944 0.82 -0.5
39,090 + GFF4944 0.82 -0.4
39,090 + GFF4944 0.82 -0.1
39,090 + GFF4944 0.82 -0.3
39,091 - GFF4944 0.82 -0.6
39,091 - GFF4944 0.82 -0.1
39,091 - GFF4944 0.82 -0.1
39,091 - GFF4944 0.82 +0.2
39,091 - GFF4944 0.82 -1.0
39,091 - GFF4944 0.82 -0.7
39,123 + GFF4944 0.83 +0.1
39,123 + GFF4944 0.83 -0.7
39,124 - GFF4944 0.83 -1.8
39,124 - GFF4944 0.83 -1.3
39,150 + GFF4944 0.84 -0.5
39,150 + GFF4944 0.84 -0.3
39,150 + GFF4944 0.84 +1.3
39,150 + GFF4944 0.84 +0.5
39,150 + GFF4944 0.84 -0.4
39,151 - GFF4944 0.84 -0.1
39,151 - GFF4944 0.84 -0.4
39,151 - GFF4944 0.84 +0.9
39,270 + GFF4944 0.88 -0.3
39,270 + GFF4944 0.88 -1.5
39,270 + GFF4944 0.88 -1.0
39,270 + GFF4944 0.88 +0.4
39,270 + GFF4944 0.88 +1.6
39,271 - GFF4944 0.88 -0.2
39,271 - GFF4944 0.88 +0.6
39,271 - GFF4944 0.88 -0.2
39,372 + -0.1
39,372 + +0.0
39,372 + -0.2
39,372 + -1.3
39,372 + -0.7
39,372 + +1.8
39,372 + -1.2
39,372 + +1.5
39,372 + -0.4
39,373 - -0.1
39,373 - +2.2
39,373 - -0.4
39,373 - +0.5
39,616 - +0.0
39,746 - GFF4945 0.11 -2.0
39,746 - GFF4945 0.11 -0.9
39,865 + GFF4945 0.27 -0.1
39,887 - GFF4945 0.30 -1.3
39,887 - GFF4945 0.30 +0.6
39,887 - GFF4945 0.30 -0.5
40,198 + GFF4945 0.71 -0.0
40,198 + GFF4945 0.71 -0.5
40,198 + GFF4945 0.71 -1.5
40,199 - GFF4945 0.71 +0.0
40,199 - GFF4945 0.71 -1.2
40,698 + GFF4946 0.16 +0.4
40,698 + GFF4946 0.16 -2.7
40,699 - GFF4946 0.16 -0.9
40,699 - GFF4946 0.16 -1.0
40,699 - GFF4946 0.16 -1.0
40,699 - GFF4946 0.16 +0.1
40,699 - GFF4946 0.16 +0.2
41,133 + GFF4946 0.41 -1.1
41,133 + GFF4946 0.41 +1.8
41,133 + GFF4946 0.41 -0.3
41,133 + GFF4946 0.41 -0.2
41,133 + GFF4946 0.41 +0.3
41,134 - GFF4946 0.41 -0.3
41,134 - GFF4946 0.41 -0.3
41,134 - GFF4946 0.41 -1.2
41,134 - GFF4946 0.41 +1.4
41,139 + GFF4946 0.41 -1.0
41,139 + GFF4946 0.41 -0.2
41,139 + GFF4946 0.41 +0.3
41,139 + GFF4946 0.41 +0.5
41,139 + GFF4946 0.41 -1.5
41,139 + GFF4946 0.41 -0.5
41,139 + GFF4946 0.41 +1.0
41,139 + GFF4946 0.41 -0.4
41,139 + GFF4946 0.41 +0.1
41,139 + GFF4946 0.41 -0.2
41,140 - GFF4946 0.41 +1.8
41,140 - GFF4946 0.41 -0.2
41,140 - GFF4946 0.41 -0.1
41,140 - GFF4946 0.41 -0.2
41,202 + GFF4946 0.45 +0.7
41,203 - GFF4946 0.45 -0.1
41,292 + GFF4946 0.50 -0.7
41,328 + GFF4946 0.52 -2.2
41,328 + GFF4946 0.52 -0.4

Or see this region's nucleotide sequence