Strain Fitness in Variovorax sp. SCN45 around GFF4665

Experiment: M9 with Supernatant from Cyptococcus

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus
21,418	+				+0.1
21,418	+				+1.1
21,419	-				+1.1
21,419	-				-1.4
21,419	-				-0.3
21,419	-				-0.5
21,419	-				-0.2
21,573	+		GFF4664	0.18	-0.5
21,585	+		GFF4664	0.20	+0.1
21,591	+		GFF4664	0.21	+0.5
21,591	+		GFF4664	0.21	+0.3
21,591	+		GFF4664	0.21	+0.0
21,591	+		GFF4664	0.21	+0.1
21,591	+		GFF4664	0.21	-1.7
21,591	+		GFF4664	0.21	-0.3
21,591	+		GFF4664	0.21	-1.1
21,591	+		GFF4664	0.21	-1.4
21,591	+		GFF4664	0.21	+0.6
21,591	+		GFF4664	0.21	+2.5
21,591	+		GFF4664	0.21	+1.2
21,591	+		GFF4664	0.21	-1.4
21,591	+		GFF4664	0.21	-0.1
21,591	+		GFF4664	0.21	-0.2
21,591	+		GFF4664	0.21	+1.9
21,591	+		GFF4664	0.21	+0.1
21,591	+		GFF4664	0.21	-3.8
21,591	+		GFF4664	0.21	-0.8
21,591	+		GFF4664	0.21	-0.3
21,591	+		GFF4664	0.21	-0.1
21,591	+		GFF4664	0.21	+0.1
21,592	-		GFF4664	0.21	-0.7
21,592	-		GFF4664	0.21	+0.7
21,592	-		GFF4664	0.21	-0.2
21,592	-		GFF4664	0.21	+0.8
21,592	-		GFF4664	0.21	+0.2
21,592	-		GFF4664	0.21	-0.4
21,592	-		GFF4664	0.21	-0.1
21,592	-		GFF4664	0.21	-0.3
21,592	-		GFF4664	0.21	-0.3
21,592	-		GFF4664	0.21	-0.3
21,592	-		GFF4664	0.21	-1.3
21,592	-		GFF4664	0.21	-2.2
21,592	-		GFF4664	0.21	+0.3
21,592	-		GFF4664	0.21	+0.7
21,592	-		GFF4664	0.21	-0.7
21,592	-		GFF4664	0.21	+0.3
21,592	-		GFF4664	0.21	-1.0
21,592	-		GFF4664	0.21	-0.4
21,592	-		GFF4664	0.21	-1.1
21,592	-		GFF4664	0.21	+0.1
21,592	-		GFF4664	0.21	-1.3
21,592	-		GFF4664	0.21	-0.8
21,592	-		GFF4664	0.21	-0.1
21,592	-		GFF4664	0.21	-0.7
21,592	-		GFF4664	0.21	-0.8
21,592	-		GFF4664	0.21	+0.9
21,592	-		GFF4664	0.21	+1.9
21,592	-		GFF4664	0.21	-0.2
21,737	-		GFF4664	0.45	+0.5
21,737	-		GFF4664	0.45	-0.2
21,737	-		GFF4664	0.45	-0.2
21,835	+		GFF4664	0.61	+1.7
21,835	+		GFF4664	0.61	-1.5
21,835	+		GFF4664	0.61	-0.3
21,835	+		GFF4664	0.61	+0.4
21,836	-		GFF4664	0.61	-0.1
21,836	-		GFF4664	0.61	-0.3
21,836	-		GFF4664	0.61	-0.5
21,836	-		GFF4664	0.61	-0.3
21,836	-		GFF4664	0.61	-0.3
21,858	+		GFF4664	0.65	-0.9
21,858	+		GFF4664	0.65	+0.6
21,858	+		GFF4664	0.65	-1.0
21,859	-		GFF4664	0.65	-0.3
21,859	-		GFF4664	0.65	-0.3
21,859	-		GFF4664	0.65	-0.6
21,859	-		GFF4664	0.65	+0.8
21,859	-		GFF4664	0.65	-0.4
21,859	-		GFF4664	0.65	-1.2
21,859	-		GFF4664	0.65	+0.2
21,870	+		GFF4664	0.67	-0.1
21,870	+		GFF4664	0.67	-0.5
21,870	+		GFF4664	0.67	+0.7
21,870	+		GFF4664	0.67	-0.1
21,871	-		GFF4664	0.67	-0.6
21,871	-		GFF4664	0.67	-0.1
21,922	+		GFF4664	0.75	-0.4
21,922	+		GFF4664	0.75	-0.1
21,922	+		GFF4664	0.75	+1.8
21,923	-		GFF4664	0.75	-0.9
21,923	-		GFF4664	0.75	-0.3
21,923	-		GFF4664	0.75	+0.8
21,923	-		GFF4664	0.75	+0.0
21,923	-		GFF4664	0.75	+0.3
21,923	-		GFF4664	0.75	-0.3
21,923	-		GFF4664	0.75	-0.5
21,980	+		GFF4664	0.85	-0.3
21,980	+		GFF4664	0.85	-0.5
21,981	-		GFF4664	0.85	+0.1
21,981	-		GFF4664	0.85	-1.9
21,981	-		GFF4664	0.85	+0.7
21,983	+		GFF4664	0.85	-0.8
21,983	+		GFF4664	0.85	+0.0
21,983	+		GFF4664	0.85	-1.0
21,984	-		GFF4664	0.85	-1.2
21,984	-		GFF4664	0.85	-0.3
22,233	+				-1.2
22,233	+				-0.3
22,233	+				-0.3
22,234	-				+1.2
22,234	-				-1.9
22,234	-				+0.2
22,234	-				-0.8
22,234	-				-1.2
22,245	+				-0.3
22,246	-				-0.4
22,246	-				-0.1
22,342	+				+0.4
22,346	+				-0.6
22,346	+				-0.2
22,346	+				-0.7
22,346	+				-1.9
22,346	+				-0.3
22,346	+				-0.2
22,346	+				-0.6
22,346	+				-1.3
22,346	+				-0.1
22,346	+				-0.7
22,346	+				+1.5
22,346	+				-1.2
22,346	+				-0.5
22,346	+				-0.3
22,346	+				-0.6
22,346	+				-1.1
22,346	+				-0.2
22,346	+				+0.1
22,346	+				+0.4
22,346	+				-1.1
22,346	+				-0.4
22,347	-				-1.1
22,347	-				+1.7
22,347	-				-0.1
22,347	-				-0.6
22,347	-				-0.6
22,347	-				-0.1
22,347	-				-0.5
22,347	-				+1.0
22,347	-				-1.9
22,347	-				-0.1
22,347	-				-0.3
22,347	-				-0.4
22,347	-				-0.7
22,347	-				-1.5
22,371	-				-2.4
22,396	+				-0.4
22,397	-				+0.3
22,397	-				+0.7
22,412	+				-0.3
22,450	-		GFF4665	0.19	-0.1
22,450	-		GFF4665	0.19	+0.1
22,482	+		GFF4665	0.35	-1.5
22,483	-		GFF4665	0.35	+0.4
22,483	-		GFF4665	0.35	+1.5
22,513	+		GFF4665	0.50	-0.9
22,514	-		GFF4665	0.50	-1.2
22,551	+		GFF4665	0.69	-0.2
22,552	-		GFF4665	0.69	-0.9
22,680	-				+0.5
22,680	-				-0.7
22,688	+				-0.4
22,688	+				+0.3
22,688	+				+0.2
22,688	+				-1.7
22,688	+				-0.1
22,688	+				-0.8
22,688	+				+0.0
22,688	+				-0.6
22,688	+				+1.1
22,688	+				+0.1
22,688	+				-0.9
22,689	-				-0.0
22,689	-				-0.2
22,689	-				-0.0
22,689	-				-1.3
22,689	-				-2.2
22,689	-				-0.6
22,689	-				-0.6
22,689	-				-2.4
22,689	-				-0.5
22,689	-				-2.4
22,689	-				+1.0
22,689	-				-0.5
22,689	-				-0.6
22,689	-				-0.9
22,788	+				-0.5
22,788	+				+1.2
22,788	+				-0.1
22,788	+				-0.2
22,789	-				+0.0
22,789	-				-0.1
22,789	-				+1.0
22,862	+		GFF4666	0.13	-0.2
22,862	+		GFF4666	0.13	+0.3
22,862	+		GFF4666	0.13	-1.5
22,863	-		GFF4666	0.13	-0.3
22,863	-		GFF4666	0.13	-0.2
22,863	-		GFF4666	0.13	+1.5
22,863	-		GFF4666	0.13	-2.4
22,863	-		GFF4666	0.13	+1.0
22,886	+		GFF4666	0.15	-0.2
22,886	+		GFF4666	0.15	+0.7
22,886	+		GFF4666	0.15	-1.0
22,886	+		GFF4666	0.15	-0.5
22,886	+		GFF4666	0.15	-1.1
22,886	+		GFF4666	0.15	-1.5
22,887	-		GFF4666	0.15	-0.9
23,313	-		GFF4666	0.47	-0.8
23,414	+		GFF4666	0.55	-0.4
23,414	+		GFF4666	0.55	-0.2
23,415	-		GFF4666	0.55	+0.7
23,415	-		GFF4666	0.55	-0.7
23,415	-		GFF4666	0.55	+0.8
23,415	-		GFF4666	0.55	+0.1
23,415	-		GFF4666	0.55	+1.2
23,477	+		GFF4666	0.59	+0.8
23,477	+		GFF4666	0.59	-0.4
23,477	+		GFF4666	0.59	-0.3
23,478	-		GFF4666	0.60	+0.6
23,513	+		GFF4666	0.62	+0.1
23,513	+		GFF4666	0.62	+0.1
23,513	+		GFF4666	0.62	-0.7
23,513	+		GFF4666	0.62	-1.2
23,513	+		GFF4666	0.62	+0.1
23,514	-		GFF4666	0.62	+1.1
23,514	-		GFF4666	0.62	+1.1
23,514	-		GFF4666	0.62	-1.1
23,585	+		GFF4666	0.68	-0.5
23,585	+		GFF4666	0.68	-0.6
23,585	+		GFF4666	0.68	+2.8
23,585	+		GFF4666	0.68	-0.6
23,586	-		GFF4666	0.68	+0.1