Strain Fitness in Variovorax sp. SCN45 around GFF4511

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4510 and GFF4511 are separated by 112 nucleotidesGFF4511 and GFF4512 are separated by 113 nucleotidesGFF4512 and GFF4513 overlap by 4 nucleotides GFF4510 - hypothetical protein, at 151,438 to 152,877 GFF4510 GFF4511 - Transcriptional regulator, LysR family, at 152,990 to 153,979 GFF4511 GFF4512 - no description, at 154,093 to 154,641 GFF4512 GFF4513 - no description, at 154,638 to 154,943 GFF4513 Position (kb) 152 153 154Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 152.239 kb on + strand, within GFF4510at 152.243 kb on + strand, within GFF4510at 152.243 kb on + strand, within GFF4510at 152.300 kb on + strand, within GFF4510at 152.300 kb on + strand, within GFF4510at 152.300 kb on + strand, within GFF4510at 152.300 kb on + strand, within GFF4510at 152.300 kb on + strand, within GFF4510at 152.300 kb on + strand, within GFF4510at 152.301 kb on - strand, within GFF4510at 152.351 kb on + strand, within GFF4510at 152.351 kb on + strand, within GFF4510at 152.633 kb on + strand, within GFF4510at 152.633 kb on + strand, within GFF4510at 152.634 kb on - strand, within GFF4510at 152.634 kb on - strand, within GFF4510at 152.634 kb on - strand, within GFF4510at 152.686 kb on + strand, within GFF4510at 152.686 kb on + strand, within GFF4510at 152.686 kb on + strand, within GFF4510at 152.686 kb on + strand, within GFF4510at 152.686 kb on + strand, within GFF4510at 152.686 kb on + strand, within GFF4510at 152.687 kb on - strand, within GFF4510at 152.687 kb on - strand, within GFF4510at 152.687 kb on - strand, within GFF4510at 152.952 kb on + strandat 152.952 kb on + strandat 152.952 kb on + strandat 152.953 kb on - strandat 152.953 kb on - strandat 153.141 kb on - strand, within GFF4511at 153.611 kb on + strand, within GFF4511at 153.611 kb on + strand, within GFF4511at 153.611 kb on + strand, within GFF4511at 153.611 kb on + strand, within GFF4511at 153.611 kb on + strand, within GFF4511at 153.611 kb on + strand, within GFF4511at 153.612 kb on - strand, within GFF4511at 153.612 kb on - strand, within GFF4511at 153.612 kb on - strand, within GFF4511at 153.612 kb on - strand, within GFF4511at 153.728 kb on + strand, within GFF4511at 153.728 kb on + strand, within GFF4511at 153.854 kb on + strand, within GFF4511at 153.854 kb on + strand, within GFF4511at 153.854 kb on + strand, within GFF4511at 153.854 kb on + strand, within GFF4511at 153.854 kb on + strand, within GFF4511at 153.855 kb on - strand, within GFF4511at 153.855 kb on - strand, within GFF4511at 153.855 kb on - strand, within GFF4511at 153.855 kb on - strand, within GFF4511at 153.855 kb on - strand, within GFF4511at 153.855 kb on - strand, within GFF4511at 153.855 kb on - strand, within GFF4511at 153.855 kb on - strand, within GFF4511at 153.855 kb on - strand, within GFF4511at 153.855 kb on - strand, within GFF4511at 153.860 kb on + strand, within GFF4511at 153.860 kb on + strand, within GFF4511at 153.860 kb on + strand, within GFF4511at 153.861 kb on - strand, within GFF4511at 153.861 kb on - strand, within GFF4511at 153.872 kb on + strand, within GFF4511at 153.873 kb on - strand, within GFF4511at 153.937 kb on - strandat 153.937 kb on - strandat 153.937 kb on - strandat 154.047 kb on + strandat 154.048 kb on - strandat 154.048 kb on - strandat 154.088 kb on + strandat 154.088 kb on + strandat 154.088 kb on + strandat 154.088 kb on + strandat 154.089 kb on - strandat 154.089 kb on - strandat 154.089 kb on - strandat 154.089 kb on - strandat 154.089 kb on - strandat 154.089 kb on - strandat 154.153 kb on + strand, within GFF4512at 154.154 kb on - strand, within GFF4512at 154.154 kb on - strand, within GFF4512at 154.154 kb on - strand, within GFF4512at 154.240 kb on + strand, within GFF4512at 154.240 kb on + strand, within GFF4512at 154.240 kb on + strand, within GFF4512at 154.241 kb on - strand, within GFF4512at 154.241 kb on - strand, within GFF4512at 154.241 kb on - strand, within GFF4512at 154.293 kb on - strand, within GFF4512at 154.320 kb on + strand, within GFF4512at 154.320 kb on + strand, within GFF4512at 154.320 kb on + strand, within GFF4512at 154.320 kb on + strand, within GFF4512at 154.320 kb on + strand, within GFF4512at 154.320 kb on + strand, within GFF4512at 154.320 kb on + strand, within GFF4512at 154.320 kb on + strand, within GFF4512at 154.320 kb on + strand, within GFF4512at 154.320 kb on + strand, within GFF4512at 154.321 kb on - strand, within GFF4512at 154.321 kb on - strand, within GFF4512at 154.321 kb on - strand, within GFF4512at 154.321 kb on - strand, within GFF4512at 154.321 kb on - strand, within GFF4512at 154.321 kb on - strand, within GFF4512at 154.321 kb on - strand, within GFF4512at 154.321 kb on - strand, within GFF4512at 154.321 kb on - strand, within GFF4512at 154.321 kb on - strand, within GFF4512at 154.324 kb on + strand, within GFF4512at 154.324 kb on + strand, within GFF4512at 154.324 kb on + strand, within GFF4512at 154.324 kb on + strand, within GFF4512at 154.324 kb on + strand, within GFF4512at 154.324 kb on + strand, within GFF4512at 154.324 kb on + strand, within GFF4512at 154.324 kb on + strand, within GFF4512at 154.324 kb on + strand, within GFF4512at 154.324 kb on + strand, within GFF4512at 154.324 kb on + strand, within GFF4512at 154.324 kb on + strand, within GFF4512at 154.324 kb on + strand, within GFF4512at 154.324 kb on + strand, within GFF4512at 154.324 kb on + strand, within GFF4512at 154.324 kb on + strand, within GFF4512at 154.324 kb on + strand, within GFF4512at 154.324 kb on + strand, within GFF4512at 154.324 kb on + strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.325 kb on - strand, within GFF4512at 154.326 kb on + strand, within GFF4512at 154.326 kb on + strand, within GFF4512at 154.326 kb on + strand, within GFF4512at 154.327 kb on - strand, within GFF4512at 154.327 kb on - strand, within GFF4512at 154.327 kb on - strand, within GFF4512at 154.361 kb on + strand, within GFF4512at 154.361 kb on + strand, within GFF4512at 154.361 kb on + strand, within GFF4512at 154.361 kb on + strand, within GFF4512at 154.362 kb on - strand, within GFF4512at 154.441 kb on + strand, within GFF4512at 154.441 kb on + strand, within GFF4512at 154.441 kb on + strand, within GFF4512at 154.442 kb on - strand, within GFF4512at 154.453 kb on + strand, within GFF4512at 154.454 kb on - strand, within GFF4512at 154.454 kb on - strand, within GFF4512at 154.454 kb on - strand, within GFF4512at 154.501 kb on + strand, within GFF4512at 154.501 kb on + strand, within GFF4512at 154.501 kb on + strand, within GFF4512at 154.501 kb on + strand, within GFF4512at 154.501 kb on + strand, within GFF4512at 154.501 kb on + strand, within GFF4512at 154.501 kb on + strand, within GFF4512at 154.502 kb on - strand, within GFF4512at 154.502 kb on - strand, within GFF4512at 154.516 kb on + strand, within GFF4512at 154.516 kb on + strand, within GFF4512at 154.516 kb on + strand, within GFF4512at 154.517 kb on - strand, within GFF4512at 154.517 kb on - strand, within GFF4512at 154.517 kb on - strand, within GFF4512at 154.517 kb on - strand, within GFF4512at 154.670 kb on - strand, within GFF4513at 154.670 kb on - strand, within GFF4513at 154.803 kb on + strand, within GFF4513at 154.803 kb on + strand, within GFF4513at 154.803 kb on + strand, within GFF4513at 154.803 kb on + strand, within GFF4513at 154.803 kb on + strand, within GFF4513at 154.803 kb on + strand, within GFF4513at 154.804 kb on - strand, within GFF4513at 154.804 kb on - strand, within GFF4513at 154.852 kb on - strand, within GFF4513at 154.885 kb on + strand, within GFF4513at 154.885 kb on + strand, within GFF4513at 154.885 kb on + strand, within GFF4513at 154.885 kb on + strand, within GFF4513at 154.885 kb on + strand, within GFF4513at 154.885 kb on + strand, within GFF4513at 154.885 kb on + strand, within GFF4513at 154.885 kb on + strand, within GFF4513at 154.885 kb on + strand, within GFF4513at 154.886 kb on - strand, within GFF4513at 154.886 kb on - strand, within GFF4513at 154.886 kb on - strand, within GFF4513at 154.892 kb on - strand, within GFF4513at 154.892 kb on - strand, within GFF4513at 154.892 kb on - strand, within GFF4513at 154.907 kb on + strand, within GFF4513at 154.907 kb on + strand, within GFF4513at 154.908 kb on - strand, within GFF4513at 154.908 kb on - strand, within GFF4513at 154.908 kb on - strand, within GFF4513at 154.941 kb on + strandat 154.941 kb on + strandat 154.942 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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152,239 + GFF4510 0.56 +0.8
152,243 + GFF4510 0.56 -0.7
152,243 + GFF4510 0.56 -1.1
152,300 + GFF4510 0.60 -1.1
152,300 + GFF4510 0.60 +1.3
152,300 + GFF4510 0.60 -0.2
152,300 + GFF4510 0.60 -0.5
152,300 + GFF4510 0.60 -1.8
152,300 + GFF4510 0.60 +0.1
152,301 - GFF4510 0.60 -0.3
152,351 + GFF4510 0.63 -1.0
152,351 + GFF4510 0.63 -0.0
152,633 + GFF4510 0.83 -2.0
152,633 + GFF4510 0.83 +0.7
152,634 - GFF4510 0.83 +0.2
152,634 - GFF4510 0.83 +0.8
152,634 - GFF4510 0.83 +0.3
152,686 + GFF4510 0.87 +0.3
152,686 + GFF4510 0.87 -0.5
152,686 + GFF4510 0.87 +0.4
152,686 + GFF4510 0.87 -0.4
152,686 + GFF4510 0.87 -1.0
152,686 + GFF4510 0.87 +1.8
152,687 - GFF4510 0.87 -0.6
152,687 - GFF4510 0.87 +0.9
152,687 - GFF4510 0.87 +0.1
152,952 + -0.4
152,952 + +0.4
152,952 + -1.2
152,953 - -0.2
152,953 - -0.3
153,141 - GFF4511 0.15 -0.1
153,611 + GFF4511 0.63 -0.3
153,611 + GFF4511 0.63 -0.2
153,611 + GFF4511 0.63 +0.1
153,611 + GFF4511 0.63 -0.2
153,611 + GFF4511 0.63 -1.0
153,611 + GFF4511 0.63 -0.6
153,612 - GFF4511 0.63 -0.4
153,612 - GFF4511 0.63 -0.2
153,612 - GFF4511 0.63 -0.7
153,612 - GFF4511 0.63 +1.8
153,728 + GFF4511 0.75 -0.6
153,728 + GFF4511 0.75 +0.8
153,854 + GFF4511 0.87 -0.4
153,854 + GFF4511 0.87 +0.6
153,854 + GFF4511 0.87 -0.4
153,854 + GFF4511 0.87 -0.6
153,854 + GFF4511 0.87 -0.7
153,855 - GFF4511 0.87 -0.3
153,855 - GFF4511 0.87 +1.0
153,855 - GFF4511 0.87 +0.2
153,855 - GFF4511 0.87 -0.7
153,855 - GFF4511 0.87 -1.8
153,855 - GFF4511 0.87 -0.4
153,855 - GFF4511 0.87 +1.4
153,855 - GFF4511 0.87 -1.4
153,855 - GFF4511 0.87 +0.4
153,855 - GFF4511 0.87 +0.8
153,860 + GFF4511 0.88 +0.5
153,860 + GFF4511 0.88 +0.1
153,860 + GFF4511 0.88 +1.0
153,861 - GFF4511 0.88 +0.4
153,861 - GFF4511 0.88 +0.2
153,872 + GFF4511 0.89 +4.0
153,873 - GFF4511 0.89 -0.0
153,937 - -0.7
153,937 - -1.0
153,937 - -0.7
154,047 + +0.5
154,048 - +0.1
154,048 - +0.2
154,088 + -0.3
154,088 + +0.7
154,088 + +0.7
154,088 + -0.7
154,089 - -0.4
154,089 - +0.1
154,089 - -0.7
154,089 - +0.4
154,089 - -0.3
154,089 - -0.4
154,153 + GFF4512 0.11 -2.7
154,154 - GFF4512 0.11 -0.6
154,154 - GFF4512 0.11 +0.5
154,154 - GFF4512 0.11 -1.7
154,240 + GFF4512 0.27 +0.2
154,240 + GFF4512 0.27 -0.4
154,240 + GFF4512 0.27 -0.8
154,241 - GFF4512 0.27 -1.4
154,241 - GFF4512 0.27 -1.5
154,241 - GFF4512 0.27 -0.3
154,293 - GFF4512 0.36 -0.2
154,320 + GFF4512 0.41 -0.3
154,320 + GFF4512 0.41 +1.2
154,320 + GFF4512 0.41 -1.7
154,320 + GFF4512 0.41 +0.4
154,320 + GFF4512 0.41 -0.4
154,320 + GFF4512 0.41 -0.3
154,320 + GFF4512 0.41 -0.3
154,320 + GFF4512 0.41 +0.8
154,320 + GFF4512 0.41 -0.1
154,320 + GFF4512 0.41 +0.4
154,321 - GFF4512 0.42 -1.0
154,321 - GFF4512 0.42 -0.6
154,321 - GFF4512 0.42 +0.0
154,321 - GFF4512 0.42 -0.5
154,321 - GFF4512 0.42 -0.4
154,321 - GFF4512 0.42 -1.9
154,321 - GFF4512 0.42 +0.2
154,321 - GFF4512 0.42 -1.6
154,321 - GFF4512 0.42 +0.6
154,321 - GFF4512 0.42 +0.1
154,324 + GFF4512 0.42 +0.2
154,324 + GFF4512 0.42 -0.0
154,324 + GFF4512 0.42 +0.4
154,324 + GFF4512 0.42 -0.8
154,324 + GFF4512 0.42 -0.7
154,324 + GFF4512 0.42 -0.3
154,324 + GFF4512 0.42 +0.4
154,324 + GFF4512 0.42 +0.1
154,324 + GFF4512 0.42 -0.7
154,324 + GFF4512 0.42 -0.3
154,324 + GFF4512 0.42 -0.8
154,324 + GFF4512 0.42 -0.1
154,324 + GFF4512 0.42 +0.3
154,324 + GFF4512 0.42 -0.2
154,324 + GFF4512 0.42 +0.2
154,324 + GFF4512 0.42 -0.9
154,324 + GFF4512 0.42 -0.7
154,324 + GFF4512 0.42 -0.1
154,324 + GFF4512 0.42 +0.3
154,325 - GFF4512 0.42 +0.7
154,325 - GFF4512 0.42 -0.2
154,325 - GFF4512 0.42 +0.4
154,325 - GFF4512 0.42 -0.6
154,325 - GFF4512 0.42 +0.2
154,325 - GFF4512 0.42 -0.0
154,325 - GFF4512 0.42 -0.6
154,325 - GFF4512 0.42 -0.8
154,325 - GFF4512 0.42 -0.7
154,325 - GFF4512 0.42 +0.0
154,325 - GFF4512 0.42 +0.3
154,325 - GFF4512 0.42 +0.6
154,325 - GFF4512 0.42 -3.1
154,325 - GFF4512 0.42 -1.4
154,325 - GFF4512 0.42 -0.7
154,325 - GFF4512 0.42 -1.0
154,325 - GFF4512 0.42 -0.1
154,325 - GFF4512 0.42 +0.8
154,325 - GFF4512 0.42 -0.2
154,325 - GFF4512 0.42 -1.0
154,325 - GFF4512 0.42 -0.1
154,325 - GFF4512 0.42 -0.5
154,325 - GFF4512 0.42 -0.8
154,325 - GFF4512 0.42 +0.3
154,325 - GFF4512 0.42 -1.2
154,325 - GFF4512 0.42 -1.3
154,325 - GFF4512 0.42 -0.4
154,325 - GFF4512 0.42 +1.2
154,325 - GFF4512 0.42 -0.1
154,326 + GFF4512 0.42 +0.1
154,326 + GFF4512 0.42 -0.8
154,326 + GFF4512 0.42 -0.5
154,327 - GFF4512 0.43 -0.1
154,327 - GFF4512 0.43 +0.1
154,327 - GFF4512 0.43 -0.2
154,361 + GFF4512 0.49 -0.4
154,361 + GFF4512 0.49 +0.1
154,361 + GFF4512 0.49 -0.2
154,361 + GFF4512 0.49 -0.7
154,362 - GFF4512 0.49 -0.4
154,441 + GFF4512 0.63 -1.0
154,441 + GFF4512 0.63 +0.4
154,441 + GFF4512 0.63 -0.4
154,442 - GFF4512 0.64 -0.5
154,453 + GFF4512 0.66 +0.9
154,454 - GFF4512 0.66 -0.1
154,454 - GFF4512 0.66 -1.0
154,454 - GFF4512 0.66 -0.6
154,501 + GFF4512 0.74 -0.0
154,501 + GFF4512 0.74 -0.3
154,501 + GFF4512 0.74 -0.2
154,501 + GFF4512 0.74 +0.1
154,501 + GFF4512 0.74 -0.8
154,501 + GFF4512 0.74 -1.2
154,501 + GFF4512 0.74 -1.2
154,502 - GFF4512 0.74 -0.6
154,502 - GFF4512 0.74 -1.4
154,516 + GFF4512 0.77 +0.5
154,516 + GFF4512 0.77 +0.0
154,516 + GFF4512 0.77 +0.5
154,517 - GFF4512 0.77 -0.1
154,517 - GFF4512 0.77 -1.4
154,517 - GFF4512 0.77 +0.2
154,517 - GFF4512 0.77 -0.1
154,670 - GFF4513 0.10 +0.9
154,670 - GFF4513 0.10 -0.9
154,803 + GFF4513 0.54 -0.3
154,803 + GFF4513 0.54 +0.4
154,803 + GFF4513 0.54 -1.1
154,803 + GFF4513 0.54 -1.1
154,803 + GFF4513 0.54 -0.4
154,803 + GFF4513 0.54 +1.0
154,804 - GFF4513 0.54 -1.3
154,804 - GFF4513 0.54 -0.1
154,852 - GFF4513 0.70 +0.2
154,885 + GFF4513 0.81 +0.4
154,885 + GFF4513 0.81 -0.3
154,885 + GFF4513 0.81 -0.1
154,885 + GFF4513 0.81 -1.0
154,885 + GFF4513 0.81 -0.7
154,885 + GFF4513 0.81 -0.8
154,885 + GFF4513 0.81 -0.5
154,885 + GFF4513 0.81 +0.5
154,885 + GFF4513 0.81 -0.9
154,886 - GFF4513 0.81 -2.5
154,886 - GFF4513 0.81 +0.0
154,886 - GFF4513 0.81 -0.5
154,892 - GFF4513 0.83 +0.6
154,892 - GFF4513 0.83 +0.3
154,892 - GFF4513 0.83 +0.7
154,907 + GFF4513 0.88 -0.3
154,907 + GFF4513 0.88 -0.2
154,908 - GFF4513 0.88 -0.4
154,908 - GFF4513 0.88 -1.4
154,908 - GFF4513 0.88 -0.4
154,941 + -0.9
154,941 + +1.1
154,942 - +0.4

Or see this region's nucleotide sequence