Strain Fitness in Variovorax sp. SCN45 around GFF4411

Experiment: M9 with Supernatant from Cyptococcus

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus
46,977	+				+0.8
46,977	+				-0.1
46,977	+				+2.8
46,977	+				+1.4
46,977	+				-0.5
46,977	+				-0.7
46,977	+				-0.5
46,977	+				-0.5
46,977	+				+0.4
46,977	+				-1.0
46,977	+				-0.3
46,977	+				-0.1
46,977	+				-1.4
46,977	+				-0.3
46,977	+				-0.3
46,977	+				+0.7
46,978	-				-0.1
46,978	-				+0.2
46,978	-				+1.8
46,978	-				-1.1
46,978	-				+0.1
46,978	-				+0.3
46,978	-				-0.8
46,978	-				+0.3
46,978	-				-0.2
46,978	-				-1.9
46,978	-				+0.7
46,978	-				-1.2
46,978	-				+0.4
46,978	-				+0.3
46,978	-				-0.2
46,978	-				+0.7
46,978	-				-0.4
46,978	-				-0.6
46,978	-				+0.6
46,978	-				-1.1
46,978	-				+0.5
46,993	-				+0.1
46,993	-				-0.1
46,993	-				-0.8
46,993	-				-0.5
47,068	+				-0.6
47,068	+				-0.1
47,068	+				-0.2
47,068	+				-0.1
47,068	+				+0.2
47,068	+				+1.4
47,068	+				+0.8
47,068	+				-0.5
47,068	+				-1.8
47,068	+				-1.8
47,068	+				-0.2
47,068	+				+0.8
47,068	+				+0.1
47,068	+				+1.2
47,068	+				-0.1
47,068	+				+0.1
47,068	+				-0.4
47,068	+				-0.3
47,068	+				-1.1
47,068	+				+1.3
47,068	+				-0.4
47,068	+				-0.6
47,068	+				-0.6
47,069	-				+1.0
47,069	-				-0.2
47,069	-				+0.2
47,069	-				+1.8
47,069	-				-0.3
47,069	-				-1.7
47,069	-				-0.6
47,069	-				-0.0
47,069	-				-0.6
47,069	-				-0.7
47,069	-				-1.1
47,069	-				+0.4
47,069	-				-1.9
47,069	-				-0.5
47,069	-				+1.3
47,069	-				+1.1
47,069	-				+0.9
47,069	-				+0.5
47,069	-				-0.4
47,069	-				+0.5
47,069	-				+0.2
47,069	-				-0.4
47,069	-				+0.1
47,069	-				+0.1
47,070	+				-0.3
47,070	+				-0.2
47,070	+				+1.3
47,120	+		GFF4410	0.13	+0.8
47,120	+		GFF4410	0.13	+0.8
47,120	+		GFF4410	0.13	+1.5
47,120	+		GFF4410	0.13	-0.4
47,120	+		GFF4410	0.13	-1.1
47,120	+		GFF4410	0.13	-0.9
47,120	+		GFF4410	0.13	+0.0
47,120	+		GFF4410	0.13	-2.0
47,120	+		GFF4410	0.13	-1.3
47,120	+		GFF4410	0.13	-1.5
47,120	+		GFF4410	0.13	-1.7
47,121	-		GFF4410	0.14	-1.2
47,121	-		GFF4410	0.14	-0.4
47,121	-		GFF4410	0.14	-0.4
47,121	-		GFF4410	0.14	-0.4
47,121	-		GFF4410	0.14	+0.1
47,121	-		GFF4410	0.14	-1.3
47,121	-		GFF4410	0.14	-0.5
47,121	-		GFF4410	0.14	+0.1
47,121	-		GFF4410	0.14	-1.5
47,142	+		GFF4410	0.16	-0.3
47,142	+		GFF4410	0.16	+1.1
47,142	+		GFF4410	0.16	-0.7
47,142	+		GFF4410	0.16	+0.3
47,142	+		GFF4410	0.16	-0.5
47,143	-		GFF4410	0.16	+0.1
47,143	-		GFF4410	0.16	-0.6
47,143	-		GFF4410	0.16	-1.5
47,143	-		GFF4410	0.16	-0.3
47,292	+		GFF4410	0.32	-0.5
47,292	+		GFF4410	0.32	-0.8
47,292	+		GFF4410	0.32	-1.0
47,292	+		GFF4410	0.32	-0.2
47,293	-		GFF4410	0.32	-1.0
47,293	-		GFF4410	0.32	+0.6
47,324	+		GFF4410	0.35	+1.0
47,324	+		GFF4410	0.35	-0.2
47,324	+		GFF4410	0.35	-0.8
47,324	+		GFF4410	0.35	-0.3
47,324	+		GFF4410	0.35	+1.8
47,324	+		GFF4410	0.35	-1.6
47,324	+		GFF4410	0.35	-0.8
47,324	+		GFF4410	0.35	+0.0
47,324	+		GFF4410	0.35	-1.8
47,324	+		GFF4410	0.35	+0.3
47,324	+		GFF4410	0.35	+0.1
47,325	-		GFF4410	0.35	+0.3
47,325	-		GFF4410	0.35	-0.4
47,325	-		GFF4410	0.35	-0.3
47,325	-		GFF4410	0.35	-1.5
47,325	-		GFF4410	0.35	-0.7
47,325	-		GFF4410	0.35	-0.2
47,325	-		GFF4410	0.35	+0.2
47,325	-		GFF4410	0.35	-0.3
47,325	-		GFF4410	0.35	-1.0
47,325	-		GFF4410	0.35	+0.0
47,325	-		GFF4410	0.35	-0.4
47,325	-		GFF4410	0.35	-0.7
47,325	-		GFF4410	0.35	+0.6
47,325	-		GFF4410	0.35	+0.1
47,325	-		GFF4410	0.35	+0.4
47,357	+		GFF4410	0.39	-0.4
47,413	+		GFF4410	0.44	+1.8
47,413	+		GFF4410	0.44	+0.8
47,413	+		GFF4410	0.44	-0.6
47,413	+		GFF4410	0.44	+1.6
47,413	+		GFF4410	0.44	+0.1
47,413	+		GFF4410	0.44	+0.1
47,413	+		GFF4410	0.44	+0.8
47,413	+		GFF4410	0.44	-0.5
47,413	+		GFF4410	0.44	+0.5
47,413	+		GFF4410	0.44	-2.7
47,413	+		GFF4410	0.44	-0.4
47,413	+		GFF4410	0.44	-0.5
47,413	+		GFF4410	0.44	-1.3
47,413	+		GFF4410	0.44	+0.3
47,413	+		GFF4410	0.44	+0.0
47,413	+		GFF4410	0.44	+0.2
47,413	+		GFF4410	0.44	-0.2
47,413	+		GFF4410	0.44	+0.5
47,414	-		GFF4410	0.45	+0.5
47,414	-		GFF4410	0.45	-0.3
47,414	-		GFF4410	0.45	-0.9
47,414	-		GFF4410	0.45	-0.2
47,414	-		GFF4410	0.45	-1.0
47,414	-		GFF4410	0.45	-1.7
47,414	-		GFF4410	0.45	+0.3
47,414	-		GFF4410	0.45	-0.3
47,414	-		GFF4410	0.45	-0.8
47,414	-		GFF4410	0.45	+0.1
47,414	-		GFF4410	0.45	-0.7
47,414	-		GFF4410	0.45	-0.9
47,414	-		GFF4410	0.45	+0.1
47,420	+		GFF4410	0.45	+1.0
47,420	+		GFF4410	0.45	-0.3
47,420	+		GFF4410	0.45	-0.6
47,420	+		GFF4410	0.45	-0.5
47,420	+		GFF4410	0.45	-1.3
47,420	+		GFF4410	0.45	+0.7
47,420	+		GFF4410	0.45	-0.1
47,420	+		GFF4410	0.45	-0.9
47,420	+		GFF4410	0.45	+0.5
47,420	+		GFF4410	0.45	+0.1
47,420	+		GFF4410	0.45	-0.2
47,420	+		GFF4410	0.45	-0.2
47,420	+		GFF4410	0.45	-0.1
47,420	+		GFF4410	0.45	+1.8
47,421	-		GFF4410	0.45	-0.0
47,421	-		GFF4410	0.45	-1.9
47,421	-		GFF4410	0.45	-0.4
47,421	-		GFF4410	0.45	-0.7
47,421	-		GFF4410	0.45	-0.2
47,421	-		GFF4410	0.45	-0.3
47,421	-		GFF4410	0.45	-0.2
47,421	-		GFF4410	0.45	-1.4
47,421	-		GFF4410	0.45	+1.4
47,421	-		GFF4410	0.45	+0.5
47,421	-		GFF4410	0.45	+1.2
47,421	-		GFF4410	0.45	-0.7
47,489	+		GFF4410	0.52	-0.3
47,489	+		GFF4410	0.52	-0.6
47,490	-		GFF4410	0.53	+0.9
47,490	-		GFF4410	0.53	-0.7
47,490	-		GFF4410	0.53	-0.0
47,490	-		GFF4410	0.53	+0.1
47,516	+		GFF4410	0.55	+0.0
47,516	+		GFF4410	0.55	-0.0
47,516	+		GFF4410	0.55	+0.8
47,516	+		GFF4410	0.55	-0.8
47,517	-		GFF4410	0.55	-1.5
47,517	-		GFF4410	0.55	+0.4
47,526	+		GFF4410	0.56	-0.0
47,526	+		GFF4410	0.56	-0.3
47,526	+		GFF4410	0.56	+0.1
47,526	+		GFF4410	0.56	+0.3
47,526	+		GFF4410	0.56	-0.8
47,526	+		GFF4410	0.56	-0.3
47,526	+		GFF4410	0.56	-0.1
47,526	+		GFF4410	0.56	-0.7
47,526	+		GFF4410	0.56	-0.3
47,526	+		GFF4410	0.56	-1.2
47,526	+		GFF4410	0.56	-0.6
47,526	+		GFF4410	0.56	+0.2
47,526	+		GFF4410	0.56	+0.1
47,526	+		GFF4410	0.56	-0.1
47,526	+		GFF4410	0.56	-1.6
47,526	+		GFF4410	0.56	-0.2
47,526	+		GFF4410	0.56	-0.1
47,526	+		GFF4410	0.56	-0.2
47,526	+		GFF4410	0.56	+0.3
47,526	+		GFF4410	0.56	-0.9
47,526	+		GFF4410	0.56	+0.3
47,526	+		GFF4410	0.56	+1.5
47,526	+		GFF4410	0.56	+1.4
47,526	+		GFF4410	0.56	-0.8
47,526	+		GFF4410	0.56	-0.6
47,526	+		GFF4410	0.56	-0.5
47,526	+		GFF4410	0.56	-0.7
47,526	+		GFF4410	0.56	-0.0
47,526	+		GFF4410	0.56	-0.7
47,527	-		GFF4410	0.57	+0.4
47,527	-		GFF4410	0.57	-0.7
47,527	-		GFF4410	0.57	+1.2
47,527	-		GFF4410	0.57	+0.8
47,527	-		GFF4410	0.57	-0.1
47,527	-		GFF4410	0.57	+0.3
47,527	-		GFF4410	0.57	-0.2
47,527	-		GFF4410	0.57	-0.2
47,527	-		GFF4410	0.57	+0.5
47,527	-		GFF4410	0.57	-0.4
47,527	-		GFF4410	0.57	+0.2
47,527	-		GFF4410	0.57	-0.0
47,527	-		GFF4410	0.57	+0.4
47,527	-		GFF4410	0.57	-0.7
47,527	-		GFF4410	0.57	+0.6
47,527	-		GFF4410	0.57	-0.2
47,527	-		GFF4410	0.57	-0.9
47,527	-		GFF4410	0.57	+0.1
47,527	-		GFF4410	0.57	-0.0
47,527	-		GFF4410	0.57	+1.4
47,527	-		GFF4410	0.57	+0.4
47,527	-		GFF4410	0.57	-0.5
47,527	-		GFF4410	0.57	+1.8
47,527	-		GFF4410	0.57	-0.3
47,527	-		GFF4410	0.57	-0.0
47,527	-		GFF4410	0.57	-1.4
47,527	-		GFF4410	0.57	-0.5
47,527	-		GFF4410	0.57	-1.2
47,527	-		GFF4410	0.57	+0.8
47,527	-		GFF4410	0.57	-0.2
47,527	-		GFF4410	0.57	-0.9
47,527	-		GFF4410	0.57	-0.7
47,527	-		GFF4410	0.57	-0.0
47,527	-		GFF4410	0.57	-1.4
47,527	-		GFF4410	0.57	+0.2
47,527	-		GFF4410	0.57	-0.5
47,527	-		GFF4410	0.57	-0.5
47,527	-		GFF4410	0.57	+0.2
47,527	-		GFF4410	0.57	+0.2
47,527	-		GFF4410	0.57	-0.9
47,527	-		GFF4410	0.57	+1.5
47,527	-		GFF4410	0.57	-0.3
47,540	+		GFF4410	0.58	-0.1
47,540	+		GFF4410	0.58	+1.2
47,557	+		GFF4410	0.60	-0.3
47,557	+		GFF4410	0.60	-0.6
47,557	+		GFF4410	0.60	-0.2
47,557	+		GFF4410	0.60	-1.4
47,621	+		GFF4410	0.66	+0.2
47,621	+		GFF4410	0.66	+0.8
47,621	+		GFF4410	0.66	+0.5
47,621	+		GFF4410	0.66	-0.5
47,622	-		GFF4410	0.67	+0.6
47,622	-		GFF4410	0.67	-0.9
47,622	-		GFF4410	0.67	+0.4
47,622	-		GFF4410	0.67	-0.2
47,622	-		GFF4410	0.67	-0.6
47,622	-		GFF4410	0.67	-0.9
47,622	-		GFF4410	0.67	-0.6
47,635	-		GFF4410	0.68	-0.5
47,690	+		GFF4410	0.74	-0.1
47,690	+		GFF4410	0.74	-0.4
47,690	+		GFF4410	0.74	-0.3
47,691	-		GFF4410	0.74	-0.3
47,691	-		GFF4410	0.74	-1.0
47,691	-		GFF4410	0.74	-0.3
47,691	-		GFF4410	0.74	-0.2
47,691	-		GFF4410	0.74	-0.4
47,800	+		GFF4410	0.85	+0.8
47,800	+		GFF4410	0.85	-0.2
47,800	+		GFF4410	0.85	-0.4
47,800	+		GFF4410	0.85	+0.3
47,800	+		GFF4410	0.85	+0.3
47,800	+		GFF4410	0.85	+0.2
47,800	+		GFF4410	0.85	-1.2
47,800	+		GFF4410	0.85	-0.1
47,800	+		GFF4410	0.85	+0.8
47,800	+		GFF4410	0.85	-1.1
47,800	+		GFF4410	0.85	-2.0
47,800	+		GFF4410	0.85	+0.3
47,800	+		GFF4410	0.85	+0.6
47,800	+		GFF4410	0.85	-0.5
47,800	+		GFF4410	0.85	+0.5
47,800	+		GFF4410	0.85	-0.4
47,800	+		GFF4410	0.85	+0.2
47,800	+		GFF4410	0.85	-0.3
47,800	+		GFF4410	0.85	-1.7
47,801	-		GFF4410	0.86	+0.9
47,801	-		GFF4410	0.86	+0.1
47,801	-		GFF4410	0.86	+0.6
47,801	-		GFF4410	0.86	-0.1
47,801	-		GFF4410	0.86	-1.1
47,801	-		GFF4410	0.86	+1.1
47,801	-		GFF4410	0.86	+0.8
47,801	-		GFF4410	0.86	-0.2
47,801	-		GFF4410	0.86	-1.6
47,801	-		GFF4410	0.86	+0.4
47,801	-		GFF4410	0.86	+0.1
47,801	-		GFF4410	0.86	+0.4
47,801	-		GFF4410	0.86	-0.8
47,801	-		GFF4410	0.86	+0.1
47,801	-		GFF4410	0.86	-0.6
47,801	-		GFF4410	0.86	+0.0
47,895	-				-1.0
48,159	+		GFF4411	0.81	-1.0
48,159	+		GFF4411	0.81	-0.9
48,159	+		GFF4411	0.81	+0.6
48,159	+		GFF4411	0.81	+0.3
48,159	+		GFF4411	0.81	+0.3
48,159	+		GFF4411	0.81	-1.1
48,159	+		GFF4411	0.81	-0.0
48,159	+		GFF4411	0.81	-0.4
48,159	+		GFF4411	0.81	-0.6
48,159	+		GFF4411	0.81	+0.2
48,159	+		GFF4411	0.81	-0.2
48,160	-		GFF4411	0.81	+0.2
48,160	-		GFF4411	0.81	-0.1
48,160	-		GFF4411	0.81	+0.6
48,160	-		GFF4411	0.81	-0.8
48,160	-		GFF4411	0.81	+0.2
48,160	-		GFF4411	0.81	-0.6
48,160	-		GFF4411	0.81	-2.2
48,160	-		GFF4411	0.81	-0.8
48,160	-		GFF4411	0.81	+0.2
48,160	-		GFF4411	0.81	-2.0
48,160	-		GFF4411	0.81	-0.3
48,160	-		GFF4411	0.81	+0.6
48,181	-		GFF4411	0.89	+0.3
48,241	+				-0.2
48,241	+				-1.9
48,242	-				+0.1
48,242	-				-0.6
48,242	-				-0.5
48,242	-				+0.5
48,463	+				-0.2
48,463	+				-0.9
48,463	+				-0.7
48,463	+				+0.2
48,463	+				-1.3
48,463	+				-0.2
48,463	+				-0.2
48,463	+				+1.6
48,463	+				+1.2
48,463	+				-0.3
48,463	+				+1.8
48,463	+				-1.8
48,463	+				-0.2
48,463	+				+0.5
48,463	+				-0.8
48,463	+				-0.4
48,463	+				-0.7
48,463	+				+0.6
48,463	+				-1.5
48,464	-				-1.5
48,464	-				-0.5
48,464	-				-0.0
48,464	-				+0.5
48,464	-				+0.7
48,464	-				-0.5
48,464	-				-0.3
48,464	-				-0.2
48,464	-				+0.4
48,464	-				+0.4
48,464	-				-2.1
48,464	-				+0.2
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