Strain Fitness in Variovorax sp. SCN45 around GFF3762

Experiment: M9 with Supernatant from Cyptococcus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3760 and GFF3761 are separated by 57 nucleotidesGFF3761 and GFF3762 overlap by 4 nucleotidesGFF3762 and GFF3763 are separated by 56 nucleotidesGFF3763 and GFF3764 are separated by 6 nucleotides GFF3760 - putative lipoprotein, at 253,186 to 253,875 GFF3760 GFF3761 - Transcriptional regulator, MarR family, at 253,933 to 254,409 GFF3761 GFF3762 - hypothetical protein, at 254,406 to 255,440 GFF3762 GFF3763 - no description, at 255,497 to 256,015 GFF3763 GFF3764 - INTEGRAL MEMBRANE PROTEIN (Rhomboid family), at 256,022 to 256,753 GFF3764 Position (kb) 254 255 256Strain fitness (log2 ratio) -2 -1 0 1 2at 253.408 kb on + strand, within GFF3760at 253.408 kb on + strand, within GFF3760at 253.408 kb on + strand, within GFF3760at 253.408 kb on + strand, within GFF3760at 253.408 kb on + strand, within GFF3760at 253.408 kb on + strand, within GFF3760at 253.408 kb on + strand, within GFF3760at 253.408 kb on + strand, within GFF3760at 253.408 kb on + strand, within GFF3760at 253.408 kb on + strand, within GFF3760at 253.408 kb on + strand, within GFF3760at 253.408 kb on + strand, within GFF3760at 253.409 kb on - strand, within GFF3760at 253.409 kb on - strand, within GFF3760at 253.409 kb on - strand, within GFF3760at 253.409 kb on - strand, within GFF3760at 253.409 kb on - strand, within GFF3760at 253.409 kb on - strand, within GFF3760at 253.409 kb on - strand, within GFF3760at 253.409 kb on - strand, within GFF3760at 253.409 kb on - strand, within GFF3760at 253.582 kb on + strand, within GFF3760at 253.583 kb on - strand, within GFF3760at 253.714 kb on + strand, within GFF3760at 253.714 kb on + strand, within GFF3760at 253.714 kb on + strand, within GFF3760at 253.714 kb on + strand, within GFF3760at 253.715 kb on - strand, within GFF3760at 253.715 kb on - strand, within GFF3760at 253.715 kb on - strand, within GFF3760at 253.715 kb on - strand, within GFF3760at 253.715 kb on - strand, within GFF3760at 253.715 kb on - strand, within GFF3760at 253.715 kb on - strand, within GFF3760at 253.843 kb on + strandat 253.843 kb on + strandat 253.843 kb on + strandat 253.843 kb on + strandat 253.843 kb on + strandat 253.843 kb on + strandat 253.843 kb on + strandat 253.844 kb on - strandat 253.844 kb on - strandat 253.844 kb on - strandat 253.844 kb on - strandat 254.659 kb on - strand, within GFF3762at 254.659 kb on - strand, within GFF3762at 254.892 kb on + strand, within GFF3762at 254.893 kb on - strand, within GFF3762at 255.108 kb on + strand, within GFF3762at 255.108 kb on + strand, within GFF3762at 255.109 kb on - strand, within GFF3762at 255.109 kb on - strand, within GFF3762at 255.456 kb on + strandat 255.457 kb on - strandat 255.524 kb on + strandat 255.525 kb on - strandat 255.677 kb on + strand, within GFF3763at 255.677 kb on + strand, within GFF3763at 255.678 kb on - strand, within GFF3763at 255.752 kb on + strand, within GFF3763at 255.752 kb on + strand, within GFF3763at 255.752 kb on + strand, within GFF3763at 255.752 kb on + strand, within GFF3763at 255.752 kb on + strand, within GFF3763at 255.752 kb on + strand, within GFF3763at 255.752 kb on + strand, within GFF3763at 255.753 kb on - strand, within GFF3763at 255.753 kb on - strand, within GFF3763at 255.753 kb on - strand, within GFF3763at 255.753 kb on - strand, within GFF3763at 255.753 kb on - strand, within GFF3763at 255.753 kb on - strand, within GFF3763at 255.753 kb on - strand, within GFF3763at 255.770 kb on + strand, within GFF3763at 255.770 kb on + strand, within GFF3763at 255.770 kb on + strand, within GFF3763at 255.771 kb on - strand, within GFF3763at 255.771 kb on - strand, within GFF3763at 255.771 kb on - strand, within GFF3763at 255.771 kb on - strand, within GFF3763at 256.040 kb on + strandat 256.040 kb on + strandat 256.040 kb on + strandat 256.040 kb on + strandat 256.041 kb on - strandat 256.041 kb on - strandat 256.041 kb on - strandat 256.041 kb on - strandat 256.041 kb on - strandat 256.112 kb on + strand, within GFF3764at 256.112 kb on + strand, within GFF3764at 256.112 kb on + strand, within GFF3764at 256.113 kb on - strand, within GFF3764at 256.211 kb on + strand, within GFF3764at 256.212 kb on - strand, within GFF3764at 256.212 kb on - strand, within GFF3764at 256.212 kb on - strand, within GFF3764at 256.212 kb on - strand, within GFF3764at 256.212 kb on - strand, within GFF3764at 256.232 kb on + strand, within GFF3764at 256.232 kb on + strand, within GFF3764at 256.233 kb on - strand, within GFF3764at 256.233 kb on - strand, within GFF3764at 256.233 kb on - strand, within GFF3764at 256.233 kb on - strand, within GFF3764at 256.233 kb on - strand, within GFF3764

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
remove
253,408 + GFF3760 0.32 -0.2
253,408 + GFF3760 0.32 +1.0
253,408 + GFF3760 0.32 +0.6
253,408 + GFF3760 0.32 +0.2
253,408 + GFF3760 0.32 -0.4
253,408 + GFF3760 0.32 +0.3
253,408 + GFF3760 0.32 -1.2
253,408 + GFF3760 0.32 -0.6
253,408 + GFF3760 0.32 +0.2
253,408 + GFF3760 0.32 -0.0
253,408 + GFF3760 0.32 +0.7
253,408 + GFF3760 0.32 -0.2
253,409 - GFF3760 0.32 -0.3
253,409 - GFF3760 0.32 +1.8
253,409 - GFF3760 0.32 -0.7
253,409 - GFF3760 0.32 +0.1
253,409 - GFF3760 0.32 +2.6
253,409 - GFF3760 0.32 -0.4
253,409 - GFF3760 0.32 +1.4
253,409 - GFF3760 0.32 -0.8
253,409 - GFF3760 0.32 +1.3
253,582 + GFF3760 0.57 -0.8
253,583 - GFF3760 0.58 +0.1
253,714 + GFF3760 0.77 -1.0
253,714 + GFF3760 0.77 -0.5
253,714 + GFF3760 0.77 +0.3
253,714 + GFF3760 0.77 -0.1
253,715 - GFF3760 0.77 +0.0
253,715 - GFF3760 0.77 -0.2
253,715 - GFF3760 0.77 +0.5
253,715 - GFF3760 0.77 -0.6
253,715 - GFF3760 0.77 -0.9
253,715 - GFF3760 0.77 -0.9
253,715 - GFF3760 0.77 +0.8
253,843 + +0.4
253,843 + -0.4
253,843 + +0.5
253,843 + -0.2
253,843 + +0.4
253,843 + +0.5
253,843 + -2.3
253,844 - +2.1
253,844 - -0.8
253,844 - -0.7
253,844 - +1.1
254,659 - GFF3762 0.24 -2.0
254,659 - GFF3762 0.24 +0.9
254,892 + GFF3762 0.47 -2.1
254,893 - GFF3762 0.47 +0.2
255,108 + GFF3762 0.68 -0.9
255,108 + GFF3762 0.68 -0.8
255,109 - GFF3762 0.68 -0.3
255,109 - GFF3762 0.68 -0.9
255,456 + -0.2
255,457 - -0.2
255,524 + -0.8
255,525 - +1.0
255,677 + GFF3763 0.35 -1.8
255,677 + GFF3763 0.35 -0.7
255,678 - GFF3763 0.35 -0.3
255,752 + GFF3763 0.49 -0.4
255,752 + GFF3763 0.49 +0.5
255,752 + GFF3763 0.49 -0.6
255,752 + GFF3763 0.49 -0.3
255,752 + GFF3763 0.49 -1.0
255,752 + GFF3763 0.49 -0.5
255,752 + GFF3763 0.49 +0.8
255,753 - GFF3763 0.49 +0.4
255,753 - GFF3763 0.49 -0.1
255,753 - GFF3763 0.49 +2.0
255,753 - GFF3763 0.49 -0.3
255,753 - GFF3763 0.49 -0.3
255,753 - GFF3763 0.49 +0.2
255,753 - GFF3763 0.49 +0.2
255,770 + GFF3763 0.53 -1.3
255,770 + GFF3763 0.53 -0.2
255,770 + GFF3763 0.53 +0.3
255,771 - GFF3763 0.53 -0.5
255,771 - GFF3763 0.53 +2.0
255,771 - GFF3763 0.53 +0.0
255,771 - GFF3763 0.53 -0.1
256,040 + +0.6
256,040 + -0.2
256,040 + -0.1
256,040 + -0.2
256,041 - -0.4
256,041 - +0.4
256,041 - -0.0
256,041 - -0.6
256,041 - +1.5
256,112 + GFF3764 0.12 +0.2
256,112 + GFF3764 0.12 -0.1
256,112 + GFF3764 0.12 -0.2
256,113 - GFF3764 0.12 +0.1
256,211 + GFF3764 0.26 +1.1
256,212 - GFF3764 0.26 +0.7
256,212 - GFF3764 0.26 -0.6
256,212 - GFF3764 0.26 +0.2
256,212 - GFF3764 0.26 -1.0
256,212 - GFF3764 0.26 +1.2
256,232 + GFF3764 0.29 -0.2
256,232 + GFF3764 0.29 -0.7
256,233 - GFF3764 0.29 -2.1
256,233 - GFF3764 0.29 +0.1
256,233 - GFF3764 0.29 -0.6
256,233 - GFF3764 0.29 +0.2
256,233 - GFF3764 0.29 -1.2

Or see this region's nucleotide sequence