Strain Fitness in Variovorax sp. SCN45 around GFF3475

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3474 and GFF3475 overlap by 19 nucleotidesGFF3475 and GFF3476 are separated by 85 nucleotides GFF3474 - Alkyl sulfatase and related hydrolases, MBL-fold metallo-hydrolase superfamily, at 293,875 to 295,866 GFF3474 GFF3475 - Gate supefamily SpmA/SpmB domains protein, at 295,848 to 297,077 GFF3475 GFF3476 - Cardiolipin synthase (EC 2.7.8.-) phosphatidylethanolamine-utilizing, bacterial type ClsC, at 297,163 to 298,746 GFF3476 Position (kb) 295 296 297 298Strain fitness (log2 ratio) -2 -1 0 1at 294.985 kb on + strand, within GFF3474at 294.985 kb on + strand, within GFF3474at 294.985 kb on + strand, within GFF3474at 294.985 kb on + strand, within GFF3474at 294.985 kb on + strand, within GFF3474at 294.985 kb on + strand, within GFF3474at 294.985 kb on + strand, within GFF3474at 294.986 kb on - strand, within GFF3474at 294.986 kb on - strand, within GFF3474at 294.986 kb on - strand, within GFF3474at 294.986 kb on - strand, within GFF3474at 294.986 kb on - strand, within GFF3474at 294.986 kb on - strand, within GFF3474at 295.030 kb on + strand, within GFF3474at 295.030 kb on + strand, within GFF3474at 295.030 kb on + strand, within GFF3474at 295.031 kb on - strand, within GFF3474at 295.105 kb on + strand, within GFF3474at 295.105 kb on + strand, within GFF3474at 295.106 kb on - strand, within GFF3474at 295.139 kb on - strand, within GFF3474at 295.147 kb on + strand, within GFF3474at 295.148 kb on - strand, within GFF3474at 295.148 kb on - strand, within GFF3474at 295.148 kb on - strand, within GFF3474at 295.148 kb on - strand, within GFF3474at 295.148 kb on - strand, within GFF3474at 295.159 kb on + strand, within GFF3474at 295.159 kb on + strand, within GFF3474at 295.159 kb on + strand, within GFF3474at 295.205 kb on - strand, within GFF3474at 295.225 kb on + strand, within GFF3474at 295.225 kb on + strand, within GFF3474at 295.225 kb on + strand, within GFF3474at 295.225 kb on + strand, within GFF3474at 295.225 kb on + strand, within GFF3474at 295.226 kb on - strand, within GFF3474at 295.226 kb on - strand, within GFF3474at 295.226 kb on - strand, within GFF3474at 295.322 kb on - strand, within GFF3474at 295.322 kb on - strand, within GFF3474at 295.385 kb on - strand, within GFF3474at 295.401 kb on + strand, within GFF3474at 295.402 kb on - strand, within GFF3474at 295.417 kb on + strand, within GFF3474at 295.418 kb on - strand, within GFF3474at 295.809 kb on + strandat 295.864 kb on + strandat 295.961 kb on - strandat 295.975 kb on + strand, within GFF3475at 295.975 kb on + strand, within GFF3475at 295.975 kb on + strand, within GFF3475at 295.975 kb on + strand, within GFF3475at 295.975 kb on + strand, within GFF3475at 295.976 kb on - strand, within GFF3475at 295.976 kb on - strand, within GFF3475at 295.976 kb on - strand, within GFF3475at 296.236 kb on + strand, within GFF3475at 296.237 kb on - strand, within GFF3475at 296.296 kb on + strand, within GFF3475at 296.296 kb on + strand, within GFF3475at 296.296 kb on + strand, within GFF3475at 296.297 kb on - strand, within GFF3475at 296.297 kb on - strand, within GFF3475at 296.297 kb on - strand, within GFF3475at 296.297 kb on - strand, within GFF3475at 296.297 kb on - strand, within GFF3475at 296.297 kb on - strand, within GFF3475at 296.297 kb on - strand, within GFF3475at 296.458 kb on + strand, within GFF3475at 296.458 kb on + strand, within GFF3475at 296.459 kb on - strand, within GFF3475at 296.459 kb on - strand, within GFF3475at 296.459 kb on - strand, within GFF3475at 296.599 kb on + strand, within GFF3475at 296.599 kb on + strand, within GFF3475at 296.599 kb on + strand, within GFF3475at 296.599 kb on + strand, within GFF3475at 296.599 kb on + strand, within GFF3475at 297.118 kb on + strandat 297.118 kb on + strandat 297.119 kb on - strandat 297.119 kb on - strandat 297.127 kb on - strandat 297.150 kb on + strandat 297.150 kb on + strandat 297.150 kb on + strandat 297.150 kb on + strandat 297.151 kb on - strandat 297.151 kb on - strandat 297.151 kb on - strandat 297.151 kb on - strandat 297.151 kb on - strandat 297.151 kb on - strandat 297.151 kb on - strandat 297.445 kb on + strand, within GFF3476at 297.445 kb on + strand, within GFF3476at 297.445 kb on + strand, within GFF3476at 297.445 kb on + strand, within GFF3476at 297.445 kb on + strand, within GFF3476at 297.446 kb on - strand, within GFF3476at 297.446 kb on - strand, within GFF3476at 297.448 kb on + strand, within GFF3476at 297.448 kb on + strand, within GFF3476at 297.448 kb on + strand, within GFF3476at 297.448 kb on + strand, within GFF3476at 297.448 kb on + strand, within GFF3476at 297.449 kb on - strand, within GFF3476at 297.449 kb on - strand, within GFF3476at 297.449 kb on - strand, within GFF3476at 297.547 kb on + strand, within GFF3476at 297.547 kb on + strand, within GFF3476at 297.547 kb on + strand, within GFF3476at 297.547 kb on + strand, within GFF3476at 297.547 kb on + strand, within GFF3476at 297.547 kb on + strand, within GFF3476at 297.548 kb on - strand, within GFF3476at 298.045 kb on + strand, within GFF3476at 298.046 kb on - strand, within GFF3476

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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294,985 + GFF3474 0.56 -0.8
294,985 + GFF3474 0.56 +0.1
294,985 + GFF3474 0.56 +0.6
294,985 + GFF3474 0.56 -1.5
294,985 + GFF3474 0.56 -0.1
294,985 + GFF3474 0.56 +0.4
294,985 + GFF3474 0.56 -0.1
294,986 - GFF3474 0.56 -0.9
294,986 - GFF3474 0.56 -1.1
294,986 - GFF3474 0.56 -0.3
294,986 - GFF3474 0.56 -0.4
294,986 - GFF3474 0.56 +1.3
294,986 - GFF3474 0.56 -0.9
295,030 + GFF3474 0.58 +0.1
295,030 + GFF3474 0.58 +0.6
295,030 + GFF3474 0.58 -1.9
295,031 - GFF3474 0.58 +0.0
295,105 + GFF3474 0.62 -1.2
295,105 + GFF3474 0.62 -0.9
295,106 - GFF3474 0.62 +0.4
295,139 - GFF3474 0.63 +0.6
295,147 + GFF3474 0.64 +0.9
295,148 - GFF3474 0.64 -0.1
295,148 - GFF3474 0.64 -0.7
295,148 - GFF3474 0.64 +0.1
295,148 - GFF3474 0.64 +0.0
295,148 - GFF3474 0.64 -1.3
295,159 + GFF3474 0.64 +0.2
295,159 + GFF3474 0.64 -0.9
295,159 + GFF3474 0.64 -0.1
295,205 - GFF3474 0.67 +1.3
295,225 + GFF3474 0.68 +0.1
295,225 + GFF3474 0.68 -0.3
295,225 + GFF3474 0.68 -0.5
295,225 + GFF3474 0.68 +0.3
295,225 + GFF3474 0.68 -0.4
295,226 - GFF3474 0.68 -0.2
295,226 - GFF3474 0.68 -0.2
295,226 - GFF3474 0.68 -0.9
295,322 - GFF3474 0.73 -0.4
295,322 - GFF3474 0.73 -0.5
295,385 - GFF3474 0.76 +0.1
295,401 + GFF3474 0.77 -0.3
295,402 - GFF3474 0.77 -0.2
295,417 + GFF3474 0.77 +0.6
295,418 - GFF3474 0.77 -0.3
295,809 + -0.0
295,864 + -0.5
295,961 - +0.1
295,975 + GFF3475 0.10 -0.1
295,975 + GFF3475 0.10 -0.3
295,975 + GFF3475 0.10 +0.7
295,975 + GFF3475 0.10 -0.0
295,975 + GFF3475 0.10 +1.2
295,976 - GFF3475 0.10 -0.1
295,976 - GFF3475 0.10 -0.7
295,976 - GFF3475 0.10 +0.1
296,236 + GFF3475 0.32 +0.3
296,237 - GFF3475 0.32 -0.2
296,296 + GFF3475 0.36 +0.1
296,296 + GFF3475 0.36 +0.1
296,296 + GFF3475 0.36 -0.3
296,297 - GFF3475 0.37 -0.2
296,297 - GFF3475 0.37 -1.0
296,297 - GFF3475 0.37 +0.2
296,297 - GFF3475 0.37 -0.4
296,297 - GFF3475 0.37 -0.1
296,297 - GFF3475 0.37 -0.4
296,297 - GFF3475 0.37 +0.2
296,458 + GFF3475 0.50 -0.3
296,458 + GFF3475 0.50 -0.0
296,459 - GFF3475 0.50 +0.2
296,459 - GFF3475 0.50 -0.0
296,459 - GFF3475 0.50 -0.6
296,599 + GFF3475 0.61 +0.2
296,599 + GFF3475 0.61 -0.1
296,599 + GFF3475 0.61 +0.3
296,599 + GFF3475 0.61 -0.0
296,599 + GFF3475 0.61 +0.0
297,118 + -0.4
297,118 + +0.4
297,119 - -0.7
297,119 - -0.3
297,127 - +0.1
297,150 + -0.3
297,150 + -0.7
297,150 + -0.7
297,150 + -1.0
297,151 - +0.3
297,151 - +0.1
297,151 - -0.0
297,151 - -0.9
297,151 - -1.9
297,151 - +0.5
297,151 - -0.1
297,445 + GFF3476 0.18 -0.1
297,445 + GFF3476 0.18 -2.1
297,445 + GFF3476 0.18 -1.7
297,445 + GFF3476 0.18 -0.1
297,445 + GFF3476 0.18 -0.3
297,446 - GFF3476 0.18 -0.2
297,446 - GFF3476 0.18 -1.1
297,448 + GFF3476 0.18 -0.9
297,448 + GFF3476 0.18 -0.5
297,448 + GFF3476 0.18 +0.0
297,448 + GFF3476 0.18 -0.7
297,448 + GFF3476 0.18 -1.1
297,449 - GFF3476 0.18 +0.7
297,449 - GFF3476 0.18 -0.3
297,449 - GFF3476 0.18 +1.1
297,547 + GFF3476 0.24 -1.7
297,547 + GFF3476 0.24 +0.4
297,547 + GFF3476 0.24 -0.3
297,547 + GFF3476 0.24 +0.1
297,547 + GFF3476 0.24 +0.8
297,547 + GFF3476 0.24 -0.2
297,548 - GFF3476 0.24 +0.4
298,045 + GFF3476 0.56 +0.7
298,046 - GFF3476 0.56 -0.4

Or see this region's nucleotide sequence