Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3470 and GFF3471 are separated by 91 nucleotides GFF3471 and GFF3472 overlap by 4 nucleotides GFF3472 and GFF3473 are separated by 110 nucleotides
GFF3470 - Permease of the drug/metabolite transporter (DMT) superfamily, at 290,821 to 291,729
GFF3470
GFF3471 - hypothetical protein, at 291,821 to 292,321
GFF3471
GFF3472 - Nitrilotriacetate monooxygenase component B (EC 1.14.13.-), at 292,318 to 292,761
GFF3472
GFF3473 - no description, at 292,872 to 293,801
GFF3473
Position (kb) 292
293 Strain fitness (log2 ratio) -1
0
1
2 at 291.413 kb on + strand, within GFF3470 at 291.413 kb on + strand, within GFF3470 at 291.413 kb on + strand, within GFF3470 at 291.413 kb on + strand, within GFF3470 at 291.413 kb on + strand, within GFF3470 at 291.414 kb on - strand, within GFF3470 at 291.414 kb on - strand, within GFF3470 at 291.414 kb on - strand, within GFF3470 at 291.553 kb on + strand, within GFF3470 at 291.553 kb on + strand, within GFF3470 at 291.553 kb on + strand, within GFF3470 at 291.554 kb on - strand, within GFF3470 at 291.776 kb on + strand at 291.777 kb on - strand at 291.795 kb on - strand at 291.841 kb on - strand at 291.841 kb on - strand at 291.963 kb on + strand, within GFF3471 at 291.963 kb on + strand, within GFF3471 at 291.964 kb on - strand, within GFF3471 at 291.964 kb on - strand, within GFF3471 at 291.964 kb on - strand, within GFF3471 at 292.062 kb on + strand, within GFF3471 at 292.159 kb on + strand, within GFF3471 at 292.161 kb on + strand, within GFF3471 at 292.161 kb on + strand, within GFF3471 at 292.161 kb on + strand, within GFF3471 at 292.161 kb on + strand, within GFF3471 at 292.161 kb on + strand, within GFF3471 at 292.162 kb on - strand, within GFF3471 at 292.162 kb on - strand, within GFF3471 at 292.162 kb on - strand, within GFF3471 at 292.162 kb on - strand, within GFF3471 at 292.162 kb on - strand, within GFF3471 at 292.162 kb on - strand, within GFF3471 at 292.337 kb on + strand at 292.595 kb on + strand, within GFF3472 at 292.596 kb on - strand, within GFF3472 at 292.822 kb on - strand at 292.952 kb on + strand at 292.953 kb on - strand at 292.978 kb on + strand, within GFF3473 at 292.978 kb on + strand, within GFF3473 at 292.979 kb on - strand, within GFF3473 at 292.979 kb on - strand, within GFF3473 at 293.647 kb on + strand, within GFF3473
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 291,413 + GFF3470 0.65 +0.6 291,413 + GFF3470 0.65 -0.2 291,413 + GFF3470 0.65 +0.9 291,413 + GFF3470 0.65 -0.7 291,413 + GFF3470 0.65 +0.9 291,414 - GFF3470 0.65 -0.2 291,414 - GFF3470 0.65 +0.1 291,414 - GFF3470 0.65 -0.5 291,553 + GFF3470 0.81 +0.9 291,553 + GFF3470 0.81 +1.4 291,553 + GFF3470 0.81 -0.7 291,554 - GFF3470 0.81 -0.9 291,776 + +0.1 291,777 - +0.0 291,795 - +1.1 291,841 - -1.1 291,841 - +0.3 291,963 + GFF3471 0.28 -0.1 291,963 + GFF3471 0.28 -0.7 291,964 - GFF3471 0.29 -0.2 291,964 - GFF3471 0.29 +0.1 291,964 - GFF3471 0.29 -0.3 292,062 + GFF3471 0.48 +0.2 292,159 + GFF3471 0.67 -0.5 292,161 + GFF3471 0.68 -0.4 292,161 + GFF3471 0.68 +2.2 292,161 + GFF3471 0.68 -0.4 292,161 + GFF3471 0.68 -1.5 292,161 + GFF3471 0.68 -1.1 292,162 - GFF3471 0.68 +1.7 292,162 - GFF3471 0.68 +0.5 292,162 - GFF3471 0.68 -1.7 292,162 - GFF3471 0.68 +0.3 292,162 - GFF3471 0.68 -0.5 292,162 - GFF3471 0.68 -1.7 292,337 + +0.9 292,595 + GFF3472 0.62 -0.3 292,596 - GFF3472 0.63 +1.9 292,822 - +0.3 292,952 + +1.5 292,953 - +1.1 292,978 + GFF3473 0.11 -0.2 292,978 + GFF3473 0.11 -1.7 292,979 - GFF3473 0.12 -0.9 292,979 - GFF3473 0.12 -0.6 293,647 + GFF3473 0.83 +1.5
Or see this region's nucleotide sequence