Strain Fitness in Variovorax sp. SCN45 around GFF3407

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3406 and GFF3407 are separated by 10 nucleotidesGFF3407 and GFF3408 are separated by 72 nucleotidesGFF3408 and GFF3409 are separated by 184 nucleotides GFF3406 - Benzoyl-CoA oxygenase component A, at 230,076 to 231,362 GFF3406 GFF3407 - MaoC domain protein, at 231,373 to 231,816 GFF3407 GFF3408 - hypothetical protein, at 231,889 to 232,320 GFF3408 GFF3409 - Probable lipoprotein signal peptide, at 232,505 to 233,539 GFF3409 Position (kb) 231 232Strain fitness (log2 ratio) -3 -2 -1 0 1at 230.479 kb on - strand, within GFF3406at 230.517 kb on + strand, within GFF3406at 230.517 kb on + strand, within GFF3406at 230.517 kb on + strand, within GFF3406at 230.517 kb on + strand, within GFF3406at 230.518 kb on - strand, within GFF3406at 230.518 kb on - strand, within GFF3406at 230.518 kb on - strand, within GFF3406at 230.518 kb on - strand, within GFF3406at 230.518 kb on - strand, within GFF3406at 230.518 kb on - strand, within GFF3406at 230.518 kb on - strand, within GFF3406at 230.518 kb on - strand, within GFF3406at 230.721 kb on + strand, within GFF3406at 230.760 kb on + strand, within GFF3406at 230.761 kb on - strand, within GFF3406at 230.761 kb on - strand, within GFF3406at 230.838 kb on + strand, within GFF3406at 230.838 kb on + strand, within GFF3406at 230.838 kb on + strand, within GFF3406at 230.838 kb on + strand, within GFF3406at 230.838 kb on + strand, within GFF3406at 230.838 kb on + strand, within GFF3406at 230.838 kb on + strand, within GFF3406at 230.838 kb on + strand, within GFF3406at 230.839 kb on - strand, within GFF3406at 230.839 kb on - strand, within GFF3406at 230.839 kb on - strand, within GFF3406at 230.839 kb on - strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.842 kb on + strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 230.843 kb on - strand, within GFF3406at 231.153 kb on + strand, within GFF3406at 231.225 kb on + strand, within GFF3406at 231.225 kb on + strand, within GFF3406at 231.225 kb on + strand, within GFF3406at 231.226 kb on - strand, within GFF3406at 231.226 kb on - strand, within GFF3406at 231.226 kb on - strand, within GFF3406at 231.226 kb on - strand, within GFF3406at 231.226 kb on - strand, within GFF3406at 231.226 kb on - strand, within GFF3406at 231.357 kb on + strandat 231.357 kb on + strandat 231.358 kb on - strandat 231.358 kb on - strandat 231.358 kb on - strandat 231.358 kb on - strandat 231.358 kb on - strandat 231.360 kb on + strandat 231.360 kb on + strandat 231.360 kb on + strandat 231.360 kb on + strandat 231.360 kb on + strandat 231.360 kb on + strandat 231.361 kb on - strandat 231.361 kb on - strandat 231.361 kb on - strandat 231.361 kb on - strandat 231.361 kb on - strandat 231.361 kb on - strandat 231.361 kb on - strandat 231.361 kb on - strandat 231.421 kb on + strand, within GFF3407at 231.421 kb on + strand, within GFF3407at 231.421 kb on + strand, within GFF3407at 231.421 kb on + strand, within GFF3407at 231.421 kb on + strand, within GFF3407at 231.421 kb on + strand, within GFF3407at 231.421 kb on + strand, within GFF3407at 231.421 kb on + strand, within GFF3407at 231.422 kb on - strand, within GFF3407at 231.422 kb on - strand, within GFF3407at 231.422 kb on - strand, within GFF3407at 231.422 kb on - strand, within GFF3407at 231.422 kb on - strand, within GFF3407at 231.422 kb on - strand, within GFF3407at 231.464 kb on - strand, within GFF3407at 231.543 kb on + strand, within GFF3407at 231.543 kb on + strand, within GFF3407at 231.543 kb on + strand, within GFF3407at 231.543 kb on + strand, within GFF3407at 231.543 kb on + strand, within GFF3407at 231.543 kb on + strand, within GFF3407at 231.543 kb on + strand, within GFF3407at 231.543 kb on + strand, within GFF3407at 231.543 kb on + strand, within GFF3407at 231.543 kb on + strand, within GFF3407at 231.544 kb on - strand, within GFF3407at 231.544 kb on - strand, within GFF3407at 231.544 kb on - strand, within GFF3407at 231.544 kb on - strand, within GFF3407at 231.544 kb on - strand, within GFF3407at 231.544 kb on - strand, within GFF3407at 231.544 kb on - strand, within GFF3407at 231.544 kb on - strand, within GFF3407at 231.891 kb on - strandat 232.339 kb on + strandat 232.339 kb on + strandat 232.339 kb on + strandat 232.340 kb on - strandat 232.448 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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230,479 - GFF3406 0.31 +0.9
230,517 + GFF3406 0.34 -0.9
230,517 + GFF3406 0.34 -0.6
230,517 + GFF3406 0.34 +1.6
230,517 + GFF3406 0.34 -1.4
230,518 - GFF3406 0.34 +0.7
230,518 - GFF3406 0.34 -1.6
230,518 - GFF3406 0.34 -0.1
230,518 - GFF3406 0.34 +0.4
230,518 - GFF3406 0.34 -0.3
230,518 - GFF3406 0.34 -0.6
230,518 - GFF3406 0.34 +0.3
230,518 - GFF3406 0.34 +0.5
230,721 + GFF3406 0.50 -1.3
230,760 + GFF3406 0.53 -0.9
230,761 - GFF3406 0.53 -2.1
230,761 - GFF3406 0.53 -0.7
230,838 + GFF3406 0.59 -2.2
230,838 + GFF3406 0.59 -0.4
230,838 + GFF3406 0.59 +0.4
230,838 + GFF3406 0.59 +0.3
230,838 + GFF3406 0.59 -0.7
230,838 + GFF3406 0.59 +0.1
230,838 + GFF3406 0.59 +1.6
230,838 + GFF3406 0.59 -2.4
230,839 - GFF3406 0.59 -1.1
230,839 - GFF3406 0.59 -0.9
230,839 - GFF3406 0.59 -0.6
230,839 - GFF3406 0.59 -0.8
230,842 + GFF3406 0.60 +0.2
230,842 + GFF3406 0.60 -0.2
230,842 + GFF3406 0.60 -0.7
230,842 + GFF3406 0.60 -0.8
230,842 + GFF3406 0.60 -1.3
230,842 + GFF3406 0.60 +0.6
230,842 + GFF3406 0.60 -1.1
230,842 + GFF3406 0.60 +0.1
230,842 + GFF3406 0.60 -0.1
230,843 - GFF3406 0.60 +0.1
230,843 - GFF3406 0.60 -1.8
230,843 - GFF3406 0.60 -1.4
230,843 - GFF3406 0.60 -1.4
230,843 - GFF3406 0.60 -0.5
230,843 - GFF3406 0.60 -1.8
230,843 - GFF3406 0.60 +0.2
230,843 - GFF3406 0.60 -1.8
230,843 - GFF3406 0.60 -1.2
230,843 - GFF3406 0.60 -0.4
230,843 - GFF3406 0.60 +0.1
230,843 - GFF3406 0.60 -1.7
230,843 - GFF3406 0.60 -0.1
230,843 - GFF3406 0.60 -0.8
230,843 - GFF3406 0.60 -0.3
230,843 - GFF3406 0.60 -0.1
231,153 + GFF3406 0.84 +0.7
231,225 + GFF3406 0.89 -1.9
231,225 + GFF3406 0.89 -2.5
231,225 + GFF3406 0.89 -2.8
231,226 - GFF3406 0.89 -2.0
231,226 - GFF3406 0.89 -2.9
231,226 - GFF3406 0.89 +0.6
231,226 - GFF3406 0.89 -1.2
231,226 - GFF3406 0.89 -1.6
231,226 - GFF3406 0.89 -2.4
231,357 + -0.5
231,357 + -0.1
231,358 - -0.5
231,358 - -1.0
231,358 - -0.4
231,358 - -0.2
231,358 - -0.0
231,360 + +0.4
231,360 + +0.2
231,360 + +0.1
231,360 + +0.4
231,360 + +0.9
231,360 + -0.1
231,361 - +0.7
231,361 - +0.3
231,361 - +0.0
231,361 - -0.3
231,361 - -0.4
231,361 - -0.2
231,361 - +1.7
231,361 - -1.0
231,421 + GFF3407 0.11 -0.4
231,421 + GFF3407 0.11 +0.2
231,421 + GFF3407 0.11 +1.1
231,421 + GFF3407 0.11 -0.4
231,421 + GFF3407 0.11 +0.0
231,421 + GFF3407 0.11 -0.7
231,421 + GFF3407 0.11 -0.3
231,421 + GFF3407 0.11 -0.6
231,422 - GFF3407 0.11 +0.0
231,422 - GFF3407 0.11 -1.1
231,422 - GFF3407 0.11 -0.7
231,422 - GFF3407 0.11 -0.9
231,422 - GFF3407 0.11 -1.1
231,422 - GFF3407 0.11 +0.5
231,464 - GFF3407 0.20 -0.4
231,543 + GFF3407 0.38 -2.2
231,543 + GFF3407 0.38 -1.2
231,543 + GFF3407 0.38 +0.9
231,543 + GFF3407 0.38 +1.0
231,543 + GFF3407 0.38 -0.2
231,543 + GFF3407 0.38 -0.6
231,543 + GFF3407 0.38 +0.4
231,543 + GFF3407 0.38 -0.2
231,543 + GFF3407 0.38 -1.1
231,543 + GFF3407 0.38 -0.6
231,544 - GFF3407 0.39 +1.1
231,544 - GFF3407 0.39 -0.0
231,544 - GFF3407 0.39 -0.8
231,544 - GFF3407 0.39 -0.1
231,544 - GFF3407 0.39 -1.4
231,544 - GFF3407 0.39 -0.1
231,544 - GFF3407 0.39 +0.1
231,544 - GFF3407 0.39 -0.9
231,891 - -0.1
232,339 + -0.1
232,339 + -1.4
232,339 + +0.1
232,340 - -0.7
232,448 + -0.9

Or see this region's nucleotide sequence