Strain Fitness in Variovorax sp. SCN45 around GFF3288

Experiment: M9 with Supernatant from Cyptococcus

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Supernatant from Cyptococcus
113,636	+				+0.9
113,636	+				-2.3
113,637	-				+1.1
113,637	-				+0.3
113,637	-				-0.8
113,656	+		GFF3286	0.22	-0.1
113,765	-				+0.1
113,775	+				-0.5
113,810	-				+0.1
113,816	+				-0.1
113,816	+				-1.1
113,816	+				-0.2
113,816	+				+0.2
113,817	-				-0.4
113,817	-				-0.2
113,817	-				-0.1
113,817	-				-0.3
113,817	-				-0.1
113,817	-				-0.4
113,817	-				+1.1
113,817	-				-0.2
113,818	+				-0.1
113,818	+				-1.6
113,818	+				-0.2
113,818	+				+0.3
113,818	+				-0.5
113,818	+				-0.2
113,818	+				-0.3
113,818	+				-2.0
113,818	+				+0.1
113,818	+				-1.1
113,818	+				-0.5
113,818	+				-0.4
113,819	-				-1.1
113,819	-				-0.3
113,819	-				-0.5
113,819	-				-1.0
113,819	-				-0.8
113,819	-				-0.3
113,819	-				+0.5
113,819	-				-0.9
113,819	-				+1.0
113,819	-				+0.1
113,819	-				+1.0
113,819	-				-0.3
113,819	-				+1.1
113,819	-				+3.1
113,819	-				-0.2
113,819	-				+1.2
113,819	-				+0.2
113,822	+				+0.0
113,822	+				-0.9
113,822	+				-0.9
113,822	+				-0.4
113,823	-				+1.1
113,823	-				-1.3
113,823	-				-0.6
113,823	-				-0.5
113,823	-				+0.1
113,823	-				-2.7
113,823	-				+1.5
113,837	+				-0.5
113,837	+				-0.1
113,838	-				-0.8
113,838	-				-0.2
114,020	+		GFF3287	0.25	-1.0
114,020	+		GFF3287	0.25	-0.5
114,020	+		GFF3287	0.25	+0.4
114,020	+		GFF3287	0.25	+0.9
114,020	+		GFF3287	0.25	-0.7
114,020	+		GFF3287	0.25	-1.9
114,020	+		GFF3287	0.25	-0.1
114,020	+		GFF3287	0.25	+0.3
114,020	+		GFF3287	0.25	+0.2
114,020	+		GFF3287	0.25	-0.3
114,020	+		GFF3287	0.25	-0.3
114,020	+		GFF3287	0.25	+2.2
114,020	+		GFF3287	0.25	-0.4
114,020	+		GFF3287	0.25	-0.6
114,020	+		GFF3287	0.25	-1.0
114,021	-		GFF3287	0.25	+0.1
114,021	-		GFF3287	0.25	+0.4
114,021	-		GFF3287	0.25	-0.3
114,021	-		GFF3287	0.25	-0.1
114,021	-		GFF3287	0.25	+0.6
114,021	-		GFF3287	0.25	-0.4
114,021	-		GFF3287	0.25	-0.4
114,021	-		GFF3287	0.25	-0.2
114,021	-		GFF3287	0.25	-0.6
114,021	-		GFF3287	0.25	-1.0
114,021	-		GFF3287	0.25	-0.3
114,021	-		GFF3287	0.25	+0.1
114,021	-		GFF3287	0.25	-0.3
114,021	-		GFF3287	0.25	-1.4
114,021	-		GFF3287	0.25	-0.6
114,021	-		GFF3287	0.25	+0.7
114,021	-		GFF3287	0.25	+0.2
114,021	-		GFF3287	0.25	-0.7
114,021	-		GFF3287	0.25	+1.7
114,021	-		GFF3287	0.25	-1.0
114,173	+		GFF3287	0.54	+1.6
114,173	+		GFF3287	0.54	-0.1
114,173	+		GFF3287	0.54	-2.1
114,173	+		GFF3287	0.54	-2.0
114,173	+		GFF3287	0.54	+0.1
114,173	+		GFF3287	0.54	+0.7
114,174	-		GFF3287	0.54	+0.9
114,174	-		GFF3287	0.54	+0.7
114,174	-		GFF3287	0.54	-0.2
114,215	+		GFF3287	0.62	+1.0
114,215	+		GFF3287	0.62	+0.4
114,215	+		GFF3287	0.62	-0.3
114,215	+		GFF3287	0.62	-0.4
114,215	+		GFF3287	0.62	-1.9
114,215	+		GFF3287	0.62	+0.5
114,215	+		GFF3287	0.62	+1.5
114,215	+		GFF3287	0.62	+0.2
114,215	+		GFF3287	0.62	-0.7
114,215	+		GFF3287	0.62	+0.2
114,215	+		GFF3287	0.62	-0.5
114,216	-		GFF3287	0.62	-0.3
114,216	-		GFF3287	0.62	-0.1
114,216	-		GFF3287	0.62	+1.1
114,216	-		GFF3287	0.62	-0.5
114,216	-		GFF3287	0.62	+0.2
114,216	-		GFF3287	0.62	-0.1
114,216	-		GFF3287	0.62	+1.1
114,216	-		GFF3287	0.62	-0.0
114,216	-		GFF3287	0.62	-0.4
114,216	-		GFF3287	0.62	+0.1
114,216	-		GFF3287	0.62	+0.7
114,216	-		GFF3287	0.62	-0.4
114,216	-		GFF3287	0.62	-0.3
114,216	-		GFF3287	0.62	-0.7
114,216	-		GFF3287	0.62	+0.3
114,245	+		GFF3287	0.68	-1.8
114,245	+		GFF3287	0.68	-1.4
114,245	+		GFF3287	0.68	-0.0
114,245	+		GFF3287	0.68	+1.3
114,245	+		GFF3287	0.68	+0.2
114,246	-		GFF3287	0.68	-0.7
114,246	-		GFF3287	0.68	-0.3
114,246	-		GFF3287	0.68	-0.6
114,246	-		GFF3287	0.68	-0.6
114,460	+				+0.0
114,460	+				-0.6
114,460	+				-0.6
114,461	-				+0.0
114,461	-				-0.6
114,639	+		GFF3288	0.23	-0.0
114,639	+		GFF3288	0.23	-0.0
114,639	+		GFF3288	0.23	-0.5
114,639	+		GFF3288	0.23	-0.1
114,639	+		GFF3288	0.23	-2.4
114,639	+		GFF3288	0.23	+0.7
114,639	+		GFF3288	0.23	+0.3
114,639	+		GFF3288	0.23	-1.3
114,639	+		GFF3288	0.23	-0.3
114,639	+		GFF3288	0.23	+0.6
114,640	-		GFF3288	0.23	-0.3
114,640	-		GFF3288	0.23	+0.7
114,640	-		GFF3288	0.23	-3.0
114,640	-		GFF3288	0.23	-0.3
114,640	-		GFF3288	0.23	+0.0
114,640	-		GFF3288	0.23	+0.0
114,640	-		GFF3288	0.23	-0.6
114,640	-		GFF3288	0.23	-0.6
114,640	-		GFF3288	0.23	-0.1
114,640	-		GFF3288	0.23	+1.4
114,640	-		GFF3288	0.23	+0.7
114,640	-		GFF3288	0.23	-0.1
114,640	-		GFF3288	0.23	-0.5
114,640	-		GFF3288	0.23	+0.2
114,640	-		GFF3288	0.23	+0.2
114,640	-		GFF3288	0.23	-0.1
114,660	+		GFF3288	0.27	-0.3
114,660	+		GFF3288	0.27	-0.9
114,660	+		GFF3288	0.27	-1.0
114,660	+		GFF3288	0.27	+0.2
114,660	+		GFF3288	0.27	-0.9
114,660	+		GFF3288	0.27	-1.4
114,660	+		GFF3288	0.27	-1.1
114,660	+		GFF3288	0.27	-0.6
114,660	+		GFF3288	0.27	-1.8
114,660	+		GFF3288	0.27	-1.1
114,660	+		GFF3288	0.27	-1.1
114,660	+		GFF3288	0.27	-1.1
114,661	-		GFF3288	0.27	-0.3
114,661	-		GFF3288	0.27	+0.0
114,661	-		GFF3288	0.27	-0.4
114,661	-		GFF3288	0.27	-0.2
114,661	-		GFF3288	0.27	-0.6
114,661	-		GFF3288	0.27	+1.4
114,661	-		GFF3288	0.27	-1.1
114,661	-		GFF3288	0.27	-0.2
114,661	-		GFF3288	0.27	+0.0
114,661	-		GFF3288	0.27	+0.2
114,661	-		GFF3288	0.27	+0.6
114,661	-		GFF3288	0.27	+0.1
114,876	+		GFF3288	0.72	-0.6
114,876	+		GFF3288	0.72	-0.7
114,876	+		GFF3288	0.72	-0.3
114,876	+		GFF3288	0.72	+0.2
114,876	+		GFF3288	0.72	-0.2
114,876	+		GFF3288	0.72	+0.4
114,876	+		GFF3288	0.72	-0.2
114,876	+		GFF3288	0.72	-1.0
114,876	+		GFF3288	0.72	+1.1
114,877	-		GFF3288	0.72	+0.0
114,877	-		GFF3288	0.72	+1.9
114,877	-		GFF3288	0.72	-0.6
114,877	-		GFF3288	0.72	-0.4
114,877	-		GFF3288	0.72	+1.3
114,877	-		GFF3288	0.72	-0.4
114,877	-		GFF3288	0.72	-0.6
114,877	-		GFF3288	0.72	+2.3
114,877	-		GFF3288	0.72	-0.4
114,877	-		GFF3288	0.72	-1.3
115,012	-				-0.7
115,012	-				+1.0
115,108	-				+0.1
115,176	+				-0.2
115,176	+				+0.0
115,177	-				-0.2
115,253	+				-0.1
115,253	+				+0.2
115,253	+				+0.2
115,253	+				+0.1
115,253	+				+0.1
115,253	+				+0.3
115,253	+				+0.5
115,253	+				+0.2
115,253	+				-0.3
115,253	+				+0.6
115,253	+				+0.8
115,254	-				+0.7
115,254	-				+1.9
115,254	-				+1.0
115,254	-				-0.4
115,254	-				+0.2
115,254	-				+1.1
115,254	-				-0.6
115,254	-				-0.1
115,254	-				-0.4
115,254	-				+1.3
115,254	-				-1.6
115,254	-				+1.9
115,254	-				-0.7
115,724	+		GFF3289	0.45	+0.5
115,724	+		GFF3289	0.45	+0.3
115,724	+		GFF3289	0.45	-0.1
115,724	+		GFF3289	0.45	+0.2
115,724	+		GFF3289	0.45	+0.7
115,724	+		GFF3289	0.45	+0.3
115,725	-		GFF3289	0.45	+1.3
115,725	-		GFF3289	0.45	+0.6
115,725	-		GFF3289	0.45	-0.1
115,725	-		GFF3289	0.45	+0.1
115,725	-		GFF3289	0.45	+0.4
115,725	-		GFF3289	0.45	-0.0
115,889	+		GFF3289	0.58	+0.2
115,889	+		GFF3289	0.58	+0.1
115,889	+		GFF3289	0.58	-0.5
115,889	+		GFF3289	0.58	+0.2
115,889	+		GFF3289	0.58	+0.5
115,890	-		GFF3289	0.58	-2.0
115,890	-		GFF3289	0.58	-0.3
115,890	-		GFF3289	0.58	+0.3
115,890	-		GFF3289	0.58	+0.5
115,890	-		GFF3289	0.58	-0.1
115,890	-		GFF3289	0.58	+1.9
115,892	+		GFF3289	0.58	-0.4
115,892	+		GFF3289	0.58	+0.3
115,892	+		GFF3289	0.58	+0.2
115,892	+		GFF3289	0.58	+0.1
115,892	+		GFF3289	0.58	-0.3
115,892	+		GFF3289	0.58	+0.1
115,892	+		GFF3289	0.58	+1.6
115,893	-		GFF3289	0.59	+0.3
115,893	-		GFF3289	0.59	-0.4
115,893	-		GFF3289	0.59	+1.9
115,893	-		GFF3289	0.59	-0.4
115,893	-		GFF3289	0.59	-1.2
115,893	-		GFF3289	0.59	+0.7