Strain Fitness in Variovorax sp. SCN45 around GFF3208

Experiment: M9 with Supernatant from Cyptococcus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3207 and GFF3208 overlap by 4 nucleotidesGFF3208 and GFF3209 overlap by 4 nucleotides GFF3207 - hypothetical protein, at 25,551 to 26,420 GFF3207 GFF3208 - Transposon Tn7 transposition protein tnsB, at 26,417 to 28,687 GFF3208 GFF3209 - no description, at 28,684 to 30,399 GFF3209 Position (kb) 26 27 28 29Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 25.556 kb on + strandat 25.636 kb on - strandat 25.639 kb on + strand, within GFF3207at 25.640 kb on - strand, within GFF3207at 25.710 kb on - strand, within GFF3207at 25.710 kb on - strand, within GFF3207at 25.723 kb on + strand, within GFF3207at 25.723 kb on + strand, within GFF3207at 25.724 kb on - strand, within GFF3207at 25.724 kb on - strand, within GFF3207at 25.747 kb on + strand, within GFF3207at 25.773 kb on + strand, within GFF3207at 25.952 kb on + strand, within GFF3207at 25.953 kb on - strand, within GFF3207at 25.953 kb on - strand, within GFF3207at 25.953 kb on - strand, within GFF3207at 25.953 kb on - strand, within GFF3207at 26.098 kb on - strand, within GFF3207at 26.142 kb on + strand, within GFF3207at 26.142 kb on + strand, within GFF3207at 26.142 kb on + strand, within GFF3207at 26.143 kb on - strand, within GFF3207at 26.568 kb on + strandat 26.568 kb on + strandat 26.569 kb on - strandat 26.569 kb on - strandat 26.569 kb on - strandat 26.753 kb on - strand, within GFF3208at 26.843 kb on - strand, within GFF3208at 26.864 kb on + strand, within GFF3208at 26.865 kb on - strand, within GFF3208at 26.883 kb on - strand, within GFF3208at 26.918 kb on + strand, within GFF3208at 26.997 kb on + strand, within GFF3208at 26.997 kb on + strand, within GFF3208at 26.997 kb on + strand, within GFF3208at 26.997 kb on + strand, within GFF3208at 26.998 kb on - strand, within GFF3208at 26.998 kb on - strand, within GFF3208at 26.998 kb on - strand, within GFF3208at 26.999 kb on + strand, within GFF3208at 26.999 kb on + strand, within GFF3208at 26.999 kb on + strand, within GFF3208at 26.999 kb on + strand, within GFF3208at 26.999 kb on + strand, within GFF3208at 26.999 kb on + strand, within GFF3208at 27.000 kb on - strand, within GFF3208at 27.000 kb on - strand, within GFF3208at 27.000 kb on - strand, within GFF3208at 27.000 kb on - strand, within GFF3208at 27.000 kb on - strand, within GFF3208at 27.088 kb on + strand, within GFF3208at 27.105 kb on - strand, within GFF3208at 27.217 kb on - strand, within GFF3208at 27.270 kb on - strand, within GFF3208at 27.378 kb on + strand, within GFF3208at 27.378 kb on + strand, within GFF3208at 27.379 kb on - strand, within GFF3208at 27.379 kb on - strand, within GFF3208at 27.398 kb on + strand, within GFF3208at 27.428 kb on + strand, within GFF3208at 27.429 kb on - strand, within GFF3208at 27.479 kb on + strand, within GFF3208at 27.480 kb on - strand, within GFF3208at 27.480 kb on - strand, within GFF3208at 27.493 kb on + strand, within GFF3208at 27.493 kb on + strand, within GFF3208at 27.493 kb on + strand, within GFF3208at 27.494 kb on - strand, within GFF3208at 27.494 kb on - strand, within GFF3208at 27.521 kb on + strand, within GFF3208at 27.521 kb on + strand, within GFF3208at 27.521 kb on + strand, within GFF3208at 27.522 kb on - strand, within GFF3208at 27.608 kb on + strand, within GFF3208at 27.609 kb on - strand, within GFF3208at 27.609 kb on - strand, within GFF3208at 27.615 kb on + strand, within GFF3208at 27.660 kb on - strand, within GFF3208at 27.749 kb on + strand, within GFF3208at 27.792 kb on + strand, within GFF3208at 27.793 kb on - strand, within GFF3208at 27.815 kb on + strand, within GFF3208at 27.816 kb on - strand, within GFF3208at 27.816 kb on - strand, within GFF3208at 27.959 kb on + strand, within GFF3208at 27.959 kb on + strand, within GFF3208at 27.960 kb on - strand, within GFF3208at 28.145 kb on + strand, within GFF3208at 28.145 kb on + strand, within GFF3208at 28.146 kb on - strand, within GFF3208at 28.146 kb on - strand, within GFF3208at 28.146 kb on - strand, within GFF3208at 28.146 kb on - strand, within GFF3208at 28.146 kb on - strand, within GFF3208at 28.146 kb on - strand, within GFF3208at 28.223 kb on + strand, within GFF3208at 28.224 kb on - strand, within GFF3208at 28.250 kb on + strand, within GFF3208at 28.250 kb on + strand, within GFF3208at 28.250 kb on + strand, within GFF3208at 28.251 kb on - strand, within GFF3208at 28.251 kb on - strand, within GFF3208at 28.606 kb on - strandat 28.606 kb on - strandat 28.762 kb on - strandat 28.782 kb on + strandat 28.782 kb on + strandat 28.796 kb on + strandat 28.802 kb on + strandat 28.802 kb on + strandat 28.802 kb on + strandat 28.803 kb on - strandat 28.803 kb on - strandat 28.873 kb on + strand, within GFF3209at 28.873 kb on + strand, within GFF3209at 28.874 kb on - strand, within GFF3209at 28.939 kb on + strand, within GFF3209at 28.940 kb on - strand, within GFF3209at 28.940 kb on - strand, within GFF3209at 29.068 kb on - strand, within GFF3209at 29.068 kb on - strand, within GFF3209at 29.131 kb on + strand, within GFF3209at 29.132 kb on - strand, within GFF3209at 29.132 kb on - strand, within GFF3209at 29.272 kb on + strand, within GFF3209at 29.273 kb on - strand, within GFF3209at 29.273 kb on - strand, within GFF3209at 29.285 kb on - strand, within GFF3209

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
remove
25,556 + +0.3
25,636 - +0.4
25,639 + GFF3207 0.10 -1.0
25,640 - GFF3207 0.10 -0.6
25,710 - GFF3207 0.18 -0.2
25,710 - GFF3207 0.18 +0.1
25,723 + GFF3207 0.20 -0.4
25,723 + GFF3207 0.20 +1.1
25,724 - GFF3207 0.20 -1.5
25,724 - GFF3207 0.20 -0.4
25,747 + GFF3207 0.23 +0.3
25,773 + GFF3207 0.26 -0.7
25,952 + GFF3207 0.46 -0.1
25,953 - GFF3207 0.46 +0.5
25,953 - GFF3207 0.46 -1.0
25,953 - GFF3207 0.46 -0.7
25,953 - GFF3207 0.46 -0.7
26,098 - GFF3207 0.63 +0.6
26,142 + GFF3207 0.68 -0.1
26,142 + GFF3207 0.68 -1.3
26,142 + GFF3207 0.68 -1.4
26,143 - GFF3207 0.68 -0.3
26,568 + +1.9
26,568 + +0.3
26,569 - -0.1
26,569 - +0.4
26,569 - -0.6
26,753 - GFF3208 0.15 +0.5
26,843 - GFF3208 0.19 -0.2
26,864 + GFF3208 0.20 -0.4
26,865 - GFF3208 0.20 +0.3
26,883 - GFF3208 0.21 -0.9
26,918 + GFF3208 0.22 +0.1
26,997 + GFF3208 0.26 +0.1
26,997 + GFF3208 0.26 -0.3
26,997 + GFF3208 0.26 -0.8
26,997 + GFF3208 0.26 -0.9
26,998 - GFF3208 0.26 -1.2
26,998 - GFF3208 0.26 -1.8
26,998 - GFF3208 0.26 -0.5
26,999 + GFF3208 0.26 -0.4
26,999 + GFF3208 0.26 -0.1
26,999 + GFF3208 0.26 -0.1
26,999 + GFF3208 0.26 +1.1
26,999 + GFF3208 0.26 -0.4
26,999 + GFF3208 0.26 -0.1
27,000 - GFF3208 0.26 -0.5
27,000 - GFF3208 0.26 +1.1
27,000 - GFF3208 0.26 -0.7
27,000 - GFF3208 0.26 -0.1
27,000 - GFF3208 0.26 +0.7
27,088 + GFF3208 0.30 -0.5
27,105 - GFF3208 0.30 -1.8
27,217 - GFF3208 0.35 -0.4
27,270 - GFF3208 0.38 -0.1
27,378 + GFF3208 0.42 -0.3
27,378 + GFF3208 0.42 -2.1
27,379 - GFF3208 0.42 +0.6
27,379 - GFF3208 0.42 +0.2
27,398 + GFF3208 0.43 -0.6
27,428 + GFF3208 0.45 +0.7
27,429 - GFF3208 0.45 -0.1
27,479 + GFF3208 0.47 -0.1
27,480 - GFF3208 0.47 -0.3
27,480 - GFF3208 0.47 -0.6
27,493 + GFF3208 0.47 -0.9
27,493 + GFF3208 0.47 -0.9
27,493 + GFF3208 0.47 -1.3
27,494 - GFF3208 0.47 -3.0
27,494 - GFF3208 0.47 -0.8
27,521 + GFF3208 0.49 +0.6
27,521 + GFF3208 0.49 -0.1
27,521 + GFF3208 0.49 -0.4
27,522 - GFF3208 0.49 -1.4
27,608 + GFF3208 0.52 -1.1
27,609 - GFF3208 0.52 -0.8
27,609 - GFF3208 0.52 -1.4
27,615 + GFF3208 0.53 +0.5
27,660 - GFF3208 0.55 -1.3
27,749 + GFF3208 0.59 -1.8
27,792 + GFF3208 0.61 +0.1
27,793 - GFF3208 0.61 +1.0
27,815 + GFF3208 0.62 -0.7
27,816 - GFF3208 0.62 -0.6
27,816 - GFF3208 0.62 -0.4
27,959 + GFF3208 0.68 -0.4
27,959 + GFF3208 0.68 -0.1
27,960 - GFF3208 0.68 -0.4
28,145 + GFF3208 0.76 +0.9
28,145 + GFF3208 0.76 -0.6
28,146 - GFF3208 0.76 -0.7
28,146 - GFF3208 0.76 +0.4
28,146 - GFF3208 0.76 -0.8
28,146 - GFF3208 0.76 -0.1
28,146 - GFF3208 0.76 -0.0
28,146 - GFF3208 0.76 -0.8
28,223 + GFF3208 0.80 +1.5
28,224 - GFF3208 0.80 +0.3
28,250 + GFF3208 0.81 -0.5
28,250 + GFF3208 0.81 +0.4
28,250 + GFF3208 0.81 +0.6
28,251 - GFF3208 0.81 -0.1
28,251 - GFF3208 0.81 -2.8
28,606 - -0.6
28,606 - -0.6
28,762 - +0.6
28,782 + -1.2
28,782 + -0.2
28,796 + +0.3
28,802 + +0.2
28,802 + +0.4
28,802 + +0.1
28,803 - -0.7
28,803 - -0.1
28,873 + GFF3209 0.11 -0.3
28,873 + GFF3209 0.11 -0.2
28,874 - GFF3209 0.11 -0.1
28,939 + GFF3209 0.15 -0.7
28,940 - GFF3209 0.15 +1.6
28,940 - GFF3209 0.15 -0.3
29,068 - GFF3209 0.22 +0.6
29,068 - GFF3209 0.22 -0.1
29,131 + GFF3209 0.26 -0.3
29,132 - GFF3209 0.26 -0.3
29,132 - GFF3209 0.26 -0.1
29,272 + GFF3209 0.34 +1.2
29,273 - GFF3209 0.34 -0.6
29,273 - GFF3209 0.34 +0.1
29,285 - GFF3209 0.35 -0.1

Or see this region's nucleotide sequence