Strain Fitness in Variovorax sp. SCN45 around GFF3181

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3179 and GFF3180 are separated by 69 nucleotidesGFF3180 and GFF3181 are separated by 8 nucleotidesGFF3181 and GFF3182 overlap by 4 nucleotides GFF3179 - hypothetical protein, at 621,586 to 622,590 GFF3179 GFF3180 - FIG00348182: hypothetical protein, at 622,660 to 623,316 GFF3180 GFF3181 - FIG005069: Hypothetical protein, at 623,325 to 624,128 GFF3181 GFF3182 - Cyclopropane-fatty-acyl-phospholipid synthase-like protein, clusters with FIG005069, at 624,125 to 625,171 GFF3182 Position (kb) 623 624 625Strain fitness (log2 ratio) -2 -1 0 1at 622.338 kb on + strand, within GFF3179at 622.338 kb on + strand, within GFF3179at 622.447 kb on + strand, within GFF3179at 622.447 kb on + strand, within GFF3179at 622.530 kb on - strandat 622.530 kb on - strandat 622.596 kb on + strandat 622.596 kb on + strandat 622.596 kb on + strandat 622.596 kb on + strandat 622.596 kb on + strandat 622.597 kb on - strandat 622.597 kb on - strandat 622.597 kb on - strandat 622.597 kb on - strandat 622.597 kb on - strandat 622.597 kb on - strandat 622.662 kb on - strandat 622.662 kb on - strandat 622.736 kb on + strand, within GFF3180at 623.035 kb on - strand, within GFF3180at 623.090 kb on + strand, within GFF3180at 623.091 kb on - strand, within GFF3180at 623.091 kb on - strand, within GFF3180at 623.091 kb on - strand, within GFF3180at 623.091 kb on - strand, within GFF3180at 623.389 kb on + strandat 623.390 kb on - strandat 623.390 kb on - strandat 623.566 kb on + strand, within GFF3181at 623.566 kb on + strand, within GFF3181at 623.566 kb on + strand, within GFF3181at 623.584 kb on + strand, within GFF3181at 623.585 kb on - strand, within GFF3181at 623.803 kb on + strand, within GFF3181at 623.803 kb on + strand, within GFF3181at 623.804 kb on - strand, within GFF3181at 623.804 kb on - strand, within GFF3181at 623.896 kb on + strand, within GFF3181at 623.896 kb on + strand, within GFF3181at 623.896 kb on + strand, within GFF3181at 623.896 kb on + strand, within GFF3181at 623.896 kb on + strand, within GFF3181at 623.896 kb on + strand, within GFF3181at 623.896 kb on + strand, within GFF3181at 623.896 kb on + strand, within GFF3181at 623.897 kb on - strand, within GFF3181at 623.897 kb on - strand, within GFF3181at 623.897 kb on - strand, within GFF3181at 623.897 kb on - strand, within GFF3181at 623.897 kb on - strand, within GFF3181at 623.897 kb on - strand, within GFF3181at 623.897 kb on - strand, within GFF3181at 623.897 kb on - strand, within GFF3181at 623.897 kb on - strand, within GFF3181at 623.981 kb on - strand, within GFF3181at 623.981 kb on - strand, within GFF3181at 623.981 kb on - strand, within GFF3181at 624.004 kb on + strand, within GFF3181at 624.004 kb on + strand, within GFF3181at 624.005 kb on - strand, within GFF3181at 624.255 kb on + strand, within GFF3182at 624.255 kb on + strand, within GFF3182at 624.333 kb on + strand, within GFF3182at 624.432 kb on + strand, within GFF3182at 624.433 kb on - strand, within GFF3182at 624.433 kb on - strand, within GFF3182at 624.433 kb on - strand, within GFF3182at 624.433 kb on - strand, within GFF3182at 624.694 kb on - strand, within GFF3182at 624.904 kb on - strand, within GFF3182at 624.954 kb on + strand, within GFF3182at 624.954 kb on + strand, within GFF3182at 624.955 kb on - strand, within GFF3182

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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622,338 + GFF3179 0.75 +0.3
622,338 + GFF3179 0.75 -0.1
622,447 + GFF3179 0.86 -0.9
622,447 + GFF3179 0.86 -0.4
622,530 - -0.5
622,530 - -1.5
622,596 + -0.2
622,596 + +0.2
622,596 + +0.1
622,596 + -0.0
622,596 + +0.3
622,597 - +0.2
622,597 - -0.7
622,597 - +0.4
622,597 - +0.5
622,597 - +0.5
622,597 - -0.5
622,662 - -0.4
622,662 - -0.6
622,736 + GFF3180 0.12 +0.1
623,035 - GFF3180 0.57 +0.4
623,090 + GFF3180 0.65 +0.4
623,091 - GFF3180 0.66 -1.5
623,091 - GFF3180 0.66 +0.4
623,091 - GFF3180 0.66 -0.5
623,091 - GFF3180 0.66 +0.3
623,389 + -0.6
623,390 - -0.0
623,390 - -0.5
623,566 + GFF3181 0.30 -1.5
623,566 + GFF3181 0.30 +0.6
623,566 + GFF3181 0.30 -0.5
623,584 + GFF3181 0.32 -0.4
623,585 - GFF3181 0.32 +0.3
623,803 + GFF3181 0.59 -0.3
623,803 + GFF3181 0.59 -1.0
623,804 - GFF3181 0.60 -0.6
623,804 - GFF3181 0.60 -1.1
623,896 + GFF3181 0.71 +0.3
623,896 + GFF3181 0.71 -1.1
623,896 + GFF3181 0.71 -0.3
623,896 + GFF3181 0.71 -0.4
623,896 + GFF3181 0.71 -0.0
623,896 + GFF3181 0.71 -0.3
623,896 + GFF3181 0.71 -0.3
623,896 + GFF3181 0.71 -0.3
623,897 - GFF3181 0.71 -0.6
623,897 - GFF3181 0.71 -0.1
623,897 - GFF3181 0.71 -1.3
623,897 - GFF3181 0.71 -0.2
623,897 - GFF3181 0.71 -0.2
623,897 - GFF3181 0.71 -1.3
623,897 - GFF3181 0.71 -0.3
623,897 - GFF3181 0.71 -0.0
623,897 - GFF3181 0.71 -0.6
623,981 - GFF3181 0.82 -1.0
623,981 - GFF3181 0.82 -0.6
623,981 - GFF3181 0.82 -1.0
624,004 + GFF3181 0.84 -0.8
624,004 + GFF3181 0.84 +0.4
624,005 - GFF3181 0.85 +0.1
624,255 + GFF3182 0.12 +0.6
624,255 + GFF3182 0.12 -1.1
624,333 + GFF3182 0.20 -0.3
624,432 + GFF3182 0.29 -0.3
624,433 - GFF3182 0.29 +0.4
624,433 - GFF3182 0.29 -0.5
624,433 - GFF3182 0.29 -0.3
624,433 - GFF3182 0.29 -1.5
624,694 - GFF3182 0.54 -2.4
624,904 - GFF3182 0.74 -0.4
624,954 + GFF3182 0.79 +0.3
624,954 + GFF3182 0.79 -0.1
624,955 - GFF3182 0.79 -0.8

Or see this region's nucleotide sequence