Strain Fitness in Variovorax sp. SCN45 around GFF2984

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2983 and GFF2984 are separated by 87 nucleotidesGFF2984 and GFF2985 are separated by 8 nucleotidesGFF2985 and GFF2986 are separated by 4 nucleotides GFF2983 - Transcriptional regulator YfeR, LysR family, at 413,448 to 414,401 GFF2983 GFF2984 - Adenosine deaminase (EC 3.5.4.4), at 414,489 to 415,586 GFF2984 GFF2985 - BUG/TctC family periplasmic protein, at 415,595 to 416,572 GFF2985 GFF2986 - Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1), at 416,577 to 417,674 GFF2986 Position (kb) 414 415 416Strain fitness (log2 ratio) -2 -1 0 1 2 3at 413.572 kb on + strand, within GFF2983at 413.572 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.701 kb on + strand, within GFF2983at 413.702 kb on - strand, within GFF2983at 413.716 kb on + strand, within GFF2983at 414.459 kb on + strandat 414.473 kb on + strandat 414.473 kb on + strandat 414.473 kb on + strandat 414.474 kb on - strandat 414.476 kb on + strandat 414.476 kb on + strandat 414.476 kb on + strandat 414.477 kb on - strandat 414.477 kb on - strandat 414.654 kb on + strand, within GFF2984at 414.654 kb on + strand, within GFF2984at 414.655 kb on - strand, within GFF2984at 414.655 kb on - strand, within GFF2984at 414.655 kb on - strand, within GFF2984at 414.738 kb on + strand, within GFF2984at 414.739 kb on - strand, within GFF2984at 414.739 kb on - strand, within GFF2984at 414.756 kb on + strand, within GFF2984at 414.756 kb on + strand, within GFF2984at 414.757 kb on - strand, within GFF2984at 414.757 kb on - strand, within GFF2984at 414.789 kb on + strand, within GFF2984at 414.789 kb on + strand, within GFF2984at 415.062 kb on + strand, within GFF2984at 415.182 kb on + strand, within GFF2984at 415.182 kb on + strand, within GFF2984at 415.183 kb on - strand, within GFF2984at 415.183 kb on - strand, within GFF2984at 415.183 kb on - strand, within GFF2984at 415.206 kb on + strand, within GFF2984at 415.206 kb on + strand, within GFF2984at 415.247 kb on - strand, within GFF2984at 415.247 kb on - strand, within GFF2984at 415.247 kb on - strand, within GFF2984at 415.247 kb on - strand, within GFF2984at 415.263 kb on + strand, within GFF2984at 415.263 kb on + strand, within GFF2984at 415.263 kb on + strand, within GFF2984at 415.263 kb on + strand, within GFF2984at 415.264 kb on - strand, within GFF2984at 415.264 kb on - strand, within GFF2984at 415.264 kb on - strand, within GFF2984at 415.264 kb on - strand, within GFF2984at 415.266 kb on + strand, within GFF2984at 415.266 kb on + strand, within GFF2984at 415.266 kb on + strand, within GFF2984at 415.266 kb on + strand, within GFF2984at 415.266 kb on + strand, within GFF2984at 415.267 kb on - strand, within GFF2984at 415.267 kb on - strand, within GFF2984at 415.267 kb on - strand, within GFF2984at 415.267 kb on - strand, within GFF2984at 415.267 kb on - strand, within GFF2984at 415.676 kb on - strandat 415.706 kb on + strand, within GFF2985at 415.707 kb on - strand, within GFF2985at 415.856 kb on + strand, within GFF2985at 415.856 kb on + strand, within GFF2985at 415.856 kb on + strand, within GFF2985at 415.857 kb on - strand, within GFF2985at 416.057 kb on + strand, within GFF2985at 416.057 kb on + strand, within GFF2985at 416.057 kb on + strand, within GFF2985at 416.057 kb on + strand, within GFF2985at 416.057 kb on + strand, within GFF2985at 416.058 kb on - strand, within GFF2985at 416.058 kb on - strand, within GFF2985at 416.058 kb on - strand, within GFF2985at 416.058 kb on - strand, within GFF2985at 416.058 kb on - strand, within GFF2985at 416.063 kb on + strand, within GFF2985at 416.063 kb on + strand, within GFF2985at 416.063 kb on + strand, within GFF2985at 416.063 kb on + strand, within GFF2985at 416.063 kb on + strand, within GFF2985at 416.063 kb on + strand, within GFF2985at 416.064 kb on - strand, within GFF2985at 416.064 kb on - strand, within GFF2985at 416.064 kb on - strand, within GFF2985

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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413,572 + GFF2983 0.13 +0.0
413,572 + GFF2983 0.13 -0.4
413,653 + GFF2983 0.21 +0.7
413,653 + GFF2983 0.21 +0.7
413,653 + GFF2983 0.21 -1.3
413,653 + GFF2983 0.21 +0.1
413,653 + GFF2983 0.21 +0.6
413,653 + GFF2983 0.21 +0.1
413,653 + GFF2983 0.21 -1.3
413,654 - GFF2983 0.22 -0.5
413,654 - GFF2983 0.22 -0.9
413,654 - GFF2983 0.22 -0.2
413,654 - GFF2983 0.22 -1.8
413,654 - GFF2983 0.22 -0.7
413,654 - GFF2983 0.22 -2.0
413,654 - GFF2983 0.22 +0.1
413,654 - GFF2983 0.22 -0.1
413,654 - GFF2983 0.22 -0.6
413,701 + GFF2983 0.27 +1.4
413,702 - GFF2983 0.27 -0.6
413,716 + GFF2983 0.28 -0.6
414,459 + +1.0
414,473 + +0.1
414,473 + +0.2
414,473 + -0.4
414,474 - -0.2
414,476 + +0.9
414,476 + +1.1
414,476 + +1.0
414,477 - +0.2
414,477 - -0.2
414,654 + GFF2984 0.15 +0.9
414,654 + GFF2984 0.15 +0.4
414,655 - GFF2984 0.15 +0.2
414,655 - GFF2984 0.15 +0.1
414,655 - GFF2984 0.15 -2.5
414,738 + GFF2984 0.23 +1.1
414,739 - GFF2984 0.23 +2.4
414,739 - GFF2984 0.23 -0.3
414,756 + GFF2984 0.24 +0.9
414,756 + GFF2984 0.24 +0.3
414,757 - GFF2984 0.24 -0.6
414,757 - GFF2984 0.24 +1.0
414,789 + GFF2984 0.27 +3.7
414,789 + GFF2984 0.27 +0.8
415,062 + GFF2984 0.52 -0.9
415,182 + GFF2984 0.63 +0.0
415,182 + GFF2984 0.63 +0.4
415,183 - GFF2984 0.63 -0.3
415,183 - GFF2984 0.63 -0.5
415,183 - GFF2984 0.63 -1.1
415,206 + GFF2984 0.65 -0.5
415,206 + GFF2984 0.65 -0.2
415,247 - GFF2984 0.69 -0.9
415,247 - GFF2984 0.69 +1.0
415,247 - GFF2984 0.69 +0.6
415,247 - GFF2984 0.69 -0.7
415,263 + GFF2984 0.70 -1.8
415,263 + GFF2984 0.70 -0.9
415,263 + GFF2984 0.70 -2.6
415,263 + GFF2984 0.70 -0.4
415,264 - GFF2984 0.71 -0.3
415,264 - GFF2984 0.71 +0.5
415,264 - GFF2984 0.71 +0.7
415,264 - GFF2984 0.71 +0.5
415,266 + GFF2984 0.71 -1.1
415,266 + GFF2984 0.71 -0.1
415,266 + GFF2984 0.71 -0.2
415,266 + GFF2984 0.71 +1.7
415,266 + GFF2984 0.71 +2.4
415,267 - GFF2984 0.71 +0.4
415,267 - GFF2984 0.71 -0.2
415,267 - GFF2984 0.71 -0.3
415,267 - GFF2984 0.71 -0.2
415,267 - GFF2984 0.71 -0.9
415,676 - -0.9
415,706 + GFF2985 0.11 -0.8
415,707 - GFF2985 0.11 +0.4
415,856 + GFF2985 0.27 -0.9
415,856 + GFF2985 0.27 -0.5
415,856 + GFF2985 0.27 +0.3
415,857 - GFF2985 0.27 -0.2
416,057 + GFF2985 0.47 -0.3
416,057 + GFF2985 0.47 +0.1
416,057 + GFF2985 0.47 -1.0
416,057 + GFF2985 0.47 -0.1
416,057 + GFF2985 0.47 -0.4
416,058 - GFF2985 0.47 -0.0
416,058 - GFF2985 0.47 -1.8
416,058 - GFF2985 0.47 -0.2
416,058 - GFF2985 0.47 -0.6
416,058 - GFF2985 0.47 -1.5
416,063 + GFF2985 0.48 -1.4
416,063 + GFF2985 0.48 -0.1
416,063 + GFF2985 0.48 -0.3
416,063 + GFF2985 0.48 -0.8
416,063 + GFF2985 0.48 -0.3
416,063 + GFF2985 0.48 +0.3
416,064 - GFF2985 0.48 -0.4
416,064 - GFF2985 0.48 +0.1
416,064 - GFF2985 0.48 -0.5

Or see this region's nucleotide sequence