Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2961 and GFF2962 are separated by 4 nucleotides GFF2962 and GFF2963 overlap by 4 nucleotides
GFF2961 - CzcABC family efflux RND transporter, transmembrane protein, at 389,127 to 392,348
GFF2961
GFF2962 - RND efflux system, membrane fusion protein, at 392,353 to 393,600
GFF2962
GFF2963 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 393,597 to 395,081
GFF2963
Position (kb) 392
393
394 Strain fitness (log2 ratio) -2
-1
0
1
2 at 391.353 kb on + strand, within GFF2961 at 391.458 kb on + strand, within GFF2961 at 391.458 kb on + strand, within GFF2961 at 391.458 kb on + strand, within GFF2961 at 391.459 kb on - strand, within GFF2961 at 391.459 kb on - strand, within GFF2961 at 391.485 kb on + strand, within GFF2961 at 391.485 kb on + strand, within GFF2961 at 391.485 kb on + strand, within GFF2961 at 391.485 kb on + strand, within GFF2961 at 391.486 kb on - strand, within GFF2961 at 391.486 kb on - strand, within GFF2961 at 391.486 kb on - strand, within GFF2961 at 391.623 kb on + strand, within GFF2961 at 391.650 kb on + strand, within GFF2961 at 391.650 kb on + strand, within GFF2961 at 391.650 kb on + strand, within GFF2961 at 391.651 kb on - strand, within GFF2961 at 391.651 kb on - strand, within GFF2961 at 391.651 kb on - strand, within GFF2961 at 391.651 kb on - strand, within GFF2961 at 391.651 kb on - strand, within GFF2961 at 391.651 kb on - strand, within GFF2961 at 391.830 kb on + strand, within GFF2961 at 391.831 kb on - strand, within GFF2961 at 391.831 kb on - strand, within GFF2961 at 391.831 kb on - strand, within GFF2961 at 392.569 kb on + strand, within GFF2962 at 392.569 kb on + strand, within GFF2962 at 392.569 kb on + strand, within GFF2962 at 392.570 kb on - strand, within GFF2962 at 392.570 kb on - strand, within GFF2962 at 392.570 kb on - strand, within GFF2962 at 392.570 kb on - strand, within GFF2962 at 392.570 kb on - strand, within GFF2962 at 392.570 kb on - strand, within GFF2962 at 392.677 kb on + strand, within GFF2962 at 392.677 kb on + strand, within GFF2962 at 392.678 kb on - strand, within GFF2962 at 392.678 kb on - strand, within GFF2962 at 393.109 kb on + strand, within GFF2962 at 393.109 kb on + strand, within GFF2962 at 393.109 kb on + strand, within GFF2962 at 393.110 kb on - strand, within GFF2962 at 393.110 kb on - strand, within GFF2962 at 393.110 kb on - strand, within GFF2962 at 393.110 kb on - strand, within GFF2962 at 393.130 kb on + strand, within GFF2962 at 393.130 kb on + strand, within GFF2962 at 393.131 kb on - strand, within GFF2962 at 393.131 kb on - strand, within GFF2962 at 393.131 kb on - strand, within GFF2962 at 393.131 kb on - strand, within GFF2962 at 393.304 kb on + strand, within GFF2962 at 393.304 kb on + strand, within GFF2962 at 393.304 kb on + strand, within GFF2962 at 393.304 kb on + strand, within GFF2962 at 393.304 kb on + strand, within GFF2962 at 393.304 kb on + strand, within GFF2962 at 393.304 kb on + strand, within GFF2962 at 393.304 kb on + strand, within GFF2962 at 393.304 kb on + strand, within GFF2962 at 393.304 kb on + strand, within GFF2962 at 393.304 kb on + strand, within GFF2962 at 393.304 kb on + strand, within GFF2962 at 393.305 kb on - strand, within GFF2962 at 393.305 kb on - strand, within GFF2962 at 393.305 kb on - strand, within GFF2962 at 393.305 kb on - strand, within GFF2962 at 393.305 kb on - strand, within GFF2962 at 393.305 kb on - strand, within GFF2962 at 393.305 kb on - strand, within GFF2962 at 393.305 kb on - strand, within GFF2962 at 393.305 kb on - strand, within GFF2962 at 393.305 kb on - strand, within GFF2962 at 393.451 kb on + strand, within GFF2962 at 393.451 kb on + strand, within GFF2962 at 393.452 kb on - strand, within GFF2962 at 393.452 kb on - strand, within GFF2962 at 393.452 kb on - strand, within GFF2962 at 393.452 kb on - strand, within GFF2962 at 393.452 kb on - strand, within GFF2962 at 393.452 kb on - strand, within GFF2962 at 393.675 kb on + strand at 393.676 kb on - strand at 393.676 kb on - strand at 393.972 kb on + strand, within GFF2963 at 393.972 kb on + strand, within GFF2963 at 393.973 kb on - strand, within GFF2963 at 394.032 kb on + strand, within GFF2963 at 394.032 kb on + strand, within GFF2963 at 394.032 kb on + strand, within GFF2963 at 394.033 kb on - strand, within GFF2963 at 394.155 kb on + strand, within GFF2963 at 394.155 kb on + strand, within GFF2963 at 394.156 kb on - strand, within GFF2963 at 394.462 kb on + strand, within GFF2963 at 394.462 kb on + strand, within GFF2963 at 394.463 kb on - strand, within GFF2963 at 394.463 kb on - strand, within GFF2963 at 394.548 kb on + strand, within GFF2963 at 394.549 kb on - strand, within GFF2963
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 391,353 + GFF2961 0.69 -0.3 391,458 + GFF2961 0.72 +0.2 391,458 + GFF2961 0.72 -0.1 391,458 + GFF2961 0.72 -0.6 391,459 - GFF2961 0.72 -0.1 391,459 - GFF2961 0.72 -1.1 391,485 + GFF2961 0.73 -0.3 391,485 + GFF2961 0.73 -1.4 391,485 + GFF2961 0.73 -0.9 391,485 + GFF2961 0.73 -0.4 391,486 - GFF2961 0.73 +0.7 391,486 - GFF2961 0.73 +0.4 391,486 - GFF2961 0.73 +0.0 391,623 + GFF2961 0.77 -0.1 391,650 + GFF2961 0.78 -0.6 391,650 + GFF2961 0.78 -0.8 391,650 + GFF2961 0.78 +0.7 391,651 - GFF2961 0.78 +0.1 391,651 - GFF2961 0.78 +0.1 391,651 - GFF2961 0.78 -0.2 391,651 - GFF2961 0.78 -0.4 391,651 - GFF2961 0.78 -0.3 391,651 - GFF2961 0.78 +0.4 391,830 + GFF2961 0.84 -0.2 391,831 - GFF2961 0.84 -0.5 391,831 - GFF2961 0.84 +0.1 391,831 - GFF2961 0.84 -0.3 392,569 + GFF2962 0.17 -0.1 392,569 + GFF2962 0.17 +1.0 392,569 + GFF2962 0.17 +1.4 392,570 - GFF2962 0.17 +1.7 392,570 - GFF2962 0.17 -0.4 392,570 - GFF2962 0.17 +1.0 392,570 - GFF2962 0.17 -1.5 392,570 - GFF2962 0.17 +0.2 392,570 - GFF2962 0.17 -2.1 392,677 + GFF2962 0.26 -1.1 392,677 + GFF2962 0.26 -0.4 392,678 - GFF2962 0.26 -0.4 392,678 - GFF2962 0.26 +0.7 393,109 + GFF2962 0.61 -0.3 393,109 + GFF2962 0.61 +0.0 393,109 + GFF2962 0.61 -0.0 393,110 - GFF2962 0.61 -0.3 393,110 - GFF2962 0.61 -1.2 393,110 - GFF2962 0.61 -0.1 393,110 - GFF2962 0.61 -0.6 393,130 + GFF2962 0.62 +0.8 393,130 + GFF2962 0.62 -1.1 393,131 - GFF2962 0.62 -0.3 393,131 - GFF2962 0.62 -1.3 393,131 - GFF2962 0.62 -1.3 393,131 - GFF2962 0.62 -0.7 393,304 + GFF2962 0.76 -0.4 393,304 + GFF2962 0.76 +0.8 393,304 + GFF2962 0.76 +0.3 393,304 + GFF2962 0.76 -0.4 393,304 + GFF2962 0.76 -0.6 393,304 + GFF2962 0.76 -0.4 393,304 + GFF2962 0.76 -0.7 393,304 + GFF2962 0.76 -0.2 393,304 + GFF2962 0.76 -1.1 393,304 + GFF2962 0.76 -0.5 393,304 + GFF2962 0.76 -0.6 393,304 + GFF2962 0.76 -0.1 393,305 - GFF2962 0.76 +0.7 393,305 - GFF2962 0.76 +0.1 393,305 - GFF2962 0.76 -1.2 393,305 - GFF2962 0.76 +0.4 393,305 - GFF2962 0.76 -1.3 393,305 - GFF2962 0.76 -0.6 393,305 - GFF2962 0.76 -0.3 393,305 - GFF2962 0.76 +0.0 393,305 - GFF2962 0.76 +0.2 393,305 - GFF2962 0.76 -0.4 393,451 + GFF2962 0.88 +2.7 393,451 + GFF2962 0.88 -2.2 393,452 - GFF2962 0.88 -1.6 393,452 - GFF2962 0.88 -0.7 393,452 - GFF2962 0.88 -1.5 393,452 - GFF2962 0.88 -0.1 393,452 - GFF2962 0.88 -0.6 393,452 - GFF2962 0.88 -0.7 393,675 + -0.6 393,676 - +0.2 393,676 - +0.4 393,972 + GFF2963 0.25 -1.9 393,972 + GFF2963 0.25 -0.2 393,973 - GFF2963 0.25 -0.6 394,032 + GFF2963 0.29 -1.5 394,032 + GFF2963 0.29 +0.1 394,032 + GFF2963 0.29 +0.7 394,033 - GFF2963 0.29 -1.0 394,155 + GFF2963 0.38 -0.2 394,155 + GFF2963 0.38 +0.1 394,156 - GFF2963 0.38 +0.3 394,462 + GFF2963 0.58 -0.1 394,462 + GFF2963 0.58 +0.3 394,463 - GFF2963 0.58 -0.6 394,463 - GFF2963 0.58 -0.8 394,548 + GFF2963 0.64 -1.0 394,549 - GFF2963 0.64 +0.8
Or see this region's nucleotide sequence