Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2635 and GFF2636 overlap by 17 nucleotides GFF2636 and GFF2637 overlap by 4 nucleotides GFF2637 and GFF2638 overlap by 4 nucleotides
GFF2635 - hypothetical protein, at 45,996 to 48,956
GFF2635
GFF2636 - hypothetical protein, at 48,940 to 50,802
GFF2636
GFF2637 - no description, at 50,799 to 51,251
GFF2637
GFF2638 - Putative 2-component regulator, at 51,248 to 52,372
GFF2638
Position (kb) 48
49
50
51 Strain fitness (log2 ratio) -2
-1
0
1 at 48.244 kb on + strand, within GFF2635 at 48.245 kb on - strand, within GFF2635 at 48.313 kb on - strand, within GFF2635 at 48.313 kb on - strand, within GFF2635 at 48.313 kb on - strand, within GFF2635 at 49.014 kb on - strand at 49.103 kb on + strand at 49.103 kb on + strand at 49.103 kb on + strand at 49.103 kb on + strand at 49.103 kb on + strand at 49.103 kb on + strand at 49.104 kb on - strand at 49.104 kb on - strand at 49.104 kb on - strand at 49.104 kb on - strand at 49.104 kb on - strand at 49.104 kb on - strand at 49.104 kb on - strand at 49.165 kb on + strand, within GFF2636 at 49.166 kb on - strand, within GFF2636 at 49.166 kb on - strand, within GFF2636 at 49.253 kb on + strand, within GFF2636 at 49.253 kb on + strand, within GFF2636 at 49.253 kb on + strand, within GFF2636 at 49.254 kb on - strand, within GFF2636 at 49.487 kb on + strand, within GFF2636 at 49.487 kb on + strand, within GFF2636 at 49.488 kb on - strand, within GFF2636 at 49.488 kb on - strand, within GFF2636 at 49.696 kb on + strand, within GFF2636 at 49.751 kb on + strand, within GFF2636 at 49.751 kb on + strand, within GFF2636 at 49.751 kb on + strand, within GFF2636 at 49.752 kb on - strand, within GFF2636 at 49.752 kb on - strand, within GFF2636 at 49.766 kb on + strand, within GFF2636 at 49.766 kb on + strand, within GFF2636 at 49.766 kb on + strand, within GFF2636 at 49.767 kb on - strand, within GFF2636 at 49.767 kb on - strand, within GFF2636 at 49.767 kb on - strand, within GFF2636 at 49.767 kb on - strand, within GFF2636 at 49.836 kb on - strand, within GFF2636 at 49.841 kb on + strand, within GFF2636 at 49.841 kb on + strand, within GFF2636 at 49.841 kb on + strand, within GFF2636 at 49.842 kb on - strand, within GFF2636 at 49.842 kb on - strand, within GFF2636 at 49.842 kb on - strand, within GFF2636 at 50.606 kb on + strand, within GFF2636 at 50.704 kb on + strand at 50.704 kb on + strand at 50.705 kb on - strand at 50.705 kb on - strand at 51.026 kb on - strand, within GFF2637 at 51.550 kb on - strand, within GFF2638 at 51.550 kb on - strand, within GFF2638 at 51.550 kb on - strand, within GFF2638 at 51.550 kb on - strand, within GFF2638
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 48,244 + GFF2635 0.76 -1.1 48,245 - GFF2635 0.76 +1.4 48,313 - GFF2635 0.78 -0.6 48,313 - GFF2635 0.78 +0.1 48,313 - GFF2635 0.78 +0.9 49,014 - +0.1 49,103 + +1.0 49,103 + +0.5 49,103 + -1.6 49,103 + +0.4 49,103 + -1.0 49,103 + -0.6 49,104 - -0.5 49,104 - -0.4 49,104 - -2.0 49,104 - -0.1 49,104 - +0.5 49,104 - -0.5 49,104 - +0.7 49,165 + GFF2636 0.12 +0.5 49,166 - GFF2636 0.12 -1.3 49,166 - GFF2636 0.12 +1.7 49,253 + GFF2636 0.17 +0.9 49,253 + GFF2636 0.17 -0.5 49,253 + GFF2636 0.17 -0.6 49,254 - GFF2636 0.17 +0.6 49,487 + GFF2636 0.29 -0.7 49,487 + GFF2636 0.29 -0.0 49,488 - GFF2636 0.29 +0.7 49,488 - GFF2636 0.29 -0.6 49,696 + GFF2636 0.41 -0.8 49,751 + GFF2636 0.44 +0.4 49,751 + GFF2636 0.44 +1.4 49,751 + GFF2636 0.44 -0.5 49,752 - GFF2636 0.44 +1.5 49,752 - GFF2636 0.44 +0.0 49,766 + GFF2636 0.44 +0.4 49,766 + GFF2636 0.44 +1.0 49,766 + GFF2636 0.44 +0.3 49,767 - GFF2636 0.44 -0.3 49,767 - GFF2636 0.44 -0.5 49,767 - GFF2636 0.44 -0.4 49,767 - GFF2636 0.44 -1.6 49,836 - GFF2636 0.48 -0.7 49,841 + GFF2636 0.48 -0.3 49,841 + GFF2636 0.48 -0.3 49,841 + GFF2636 0.48 -0.2 49,842 - GFF2636 0.48 +0.7 49,842 - GFF2636 0.48 -0.1 49,842 - GFF2636 0.48 +0.6 50,606 + GFF2636 0.89 +1.3 50,704 + +0.1 50,704 + -0.5 50,705 - -0.0 50,705 - +0.1 51,026 - GFF2637 0.50 +0.2 51,550 - GFF2638 0.27 +0.7 51,550 - GFF2638 0.27 +0.7 51,550 - GFF2638 0.27 -0.4 51,550 - GFF2638 0.27 +0.2
Or see this region's nucleotide sequence