Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2276 and GFF2277 are separated by 50 nucleotides GFF2277 and GFF2278 are separated by 1 nucleotides
GFF2276 - Chlorogenate esterase, at 329,371 to 331,110
GFF2276
GFF2277 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 331,161 to 331,895
GFF2277
GFF2278 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 331,897 to 333,711
GFF2278
Position (kb) 331
332 Strain fitness (log2 ratio) -2
-1
0
1 at 330.342 kb on - strand, within GFF2276 at 330.342 kb on - strand, within GFF2276 at 330.356 kb on + strand, within GFF2276 at 330.357 kb on - strand, within GFF2276 at 330.420 kb on - strand, within GFF2276 at 330.485 kb on + strand, within GFF2276 at 330.486 kb on - strand, within GFF2276 at 330.510 kb on - strand, within GFF2276 at 330.563 kb on + strand, within GFF2276 at 330.564 kb on - strand, within GFF2276 at 330.743 kb on + strand, within GFF2276 at 330.743 kb on + strand, within GFF2276 at 330.743 kb on + strand, within GFF2276 at 330.743 kb on + strand, within GFF2276 at 330.743 kb on + strand, within GFF2276 at 330.743 kb on + strand, within GFF2276 at 330.744 kb on - strand, within GFF2276 at 330.744 kb on - strand, within GFF2276 at 330.744 kb on - strand, within GFF2276 at 330.798 kb on - strand, within GFF2276 at 330.924 kb on - strand, within GFF2276 at 330.924 kb on - strand, within GFF2276 at 331.189 kb on + strand at 331.189 kb on + strand at 331.189 kb on + strand at 331.189 kb on + strand at 331.190 kb on - strand at 331.190 kb on - strand at 331.190 kb on - strand at 331.190 kb on - strand at 331.190 kb on - strand at 331.190 kb on - strand at 331.267 kb on + strand, within GFF2277 at 331.267 kb on + strand, within GFF2277 at 331.267 kb on + strand, within GFF2277 at 331.268 kb on - strand, within GFF2277 at 331.268 kb on - strand, within GFF2277 at 331.528 kb on + strand, within GFF2277 at 331.528 kb on + strand, within GFF2277 at 331.528 kb on + strand, within GFF2277 at 331.528 kb on + strand, within GFF2277 at 331.529 kb on - strand, within GFF2277 at 331.529 kb on - strand, within GFF2277 at 332.765 kb on + strand, within GFF2278 at 332.766 kb on - strand, within GFF2278 at 332.766 kb on - strand, within GFF2278 at 332.810 kb on + strand, within GFF2278 at 332.811 kb on - strand, within GFF2278 at 332.811 kb on - strand, within GFF2278
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 330,342 - GFF2276 0.56 -0.2 330,342 - GFF2276 0.56 -0.6 330,356 + GFF2276 0.57 -0.7 330,357 - GFF2276 0.57 -0.0 330,420 - GFF2276 0.60 -1.8 330,485 + GFF2276 0.64 +0.5 330,486 - GFF2276 0.64 +0.3 330,510 - GFF2276 0.65 -1.8 330,563 + GFF2276 0.69 -2.4 330,564 - GFF2276 0.69 +1.1 330,743 + GFF2276 0.79 -0.6 330,743 + GFF2276 0.79 -0.3 330,743 + GFF2276 0.79 -0.2 330,743 + GFF2276 0.79 +0.6 330,743 + GFF2276 0.79 +0.5 330,743 + GFF2276 0.79 -2.0 330,744 - GFF2276 0.79 -1.2 330,744 - GFF2276 0.79 -1.4 330,744 - GFF2276 0.79 +1.2 330,798 - GFF2276 0.82 -0.0 330,924 - GFF2276 0.89 -0.1 330,924 - GFF2276 0.89 +0.4 331,189 + +0.2 331,189 + -0.6 331,189 + -0.4 331,189 + -0.3 331,190 - -0.4 331,190 - -0.5 331,190 - +0.7 331,190 - +0.3 331,190 - -0.6 331,190 - +0.6 331,267 + GFF2277 0.14 -0.1 331,267 + GFF2277 0.14 -2.3 331,267 + GFF2277 0.14 +0.8 331,268 - GFF2277 0.15 +0.2 331,268 - GFF2277 0.15 -0.3 331,528 + GFF2277 0.50 -0.1 331,528 + GFF2277 0.50 +0.5 331,528 + GFF2277 0.50 +0.2 331,528 + GFF2277 0.50 -0.1 331,529 - GFF2277 0.50 -0.9 331,529 - GFF2277 0.50 -0.8 332,765 + GFF2278 0.48 +0.9 332,766 - GFF2278 0.48 -0.8 332,766 - GFF2278 0.48 -1.1 332,810 + GFF2278 0.50 -0.2 332,811 - GFF2278 0.50 +1.1 332,811 - GFF2278 0.50 +0.4
Or see this region's nucleotide sequence