Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2179 and GFF2180 overlap by 7 nucleotides GFF2180 and GFF2181 are separated by 18 nucleotides GFF2181 and GFF2182 are separated by 791 nucleotides
GFF2179 - hypothetical protein, at 233,623 to 234,042
GFF2179
GFF2180 - hypothetical protein, at 234,036 to 234,383
GFF2180
GFF2181 - no description, at 234,402 to 234,650
GFF2181
GFF2182 - Inner membrane component of TAM transport system, at 235,442 to 239,530
GFF2182
Position (kb) 234
235 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 233.529 kb on + strand at 233.556 kb on + strand at 233.556 kb on + strand at 233.557 kb on - strand at 233.557 kb on - strand at 233.557 kb on - strand at 233.557 kb on - strand at 233.666 kb on - strand, within GFF2179 at 233.695 kb on + strand, within GFF2179 at 233.695 kb on + strand, within GFF2179 at 234.004 kb on + strand at 234.004 kb on + strand at 234.004 kb on + strand at 234.004 kb on + strand at 234.005 kb on - strand at 234.005 kb on - strand at 234.005 kb on - strand at 234.005 kb on - strand at 234.123 kb on + strand, within GFF2180 at 234.123 kb on + strand, within GFF2180 at 234.123 kb on + strand, within GFF2180 at 234.124 kb on - strand, within GFF2180 at 234.124 kb on - strand, within GFF2180 at 234.124 kb on - strand, within GFF2180 at 234.313 kb on + strand, within GFF2180 at 234.313 kb on + strand, within GFF2180 at 234.313 kb on + strand, within GFF2180 at 234.313 kb on + strand, within GFF2180 at 234.313 kb on + strand, within GFF2180 at 234.314 kb on - strand, within GFF2180 at 234.314 kb on - strand, within GFF2180 at 234.314 kb on - strand, within GFF2180 at 234.314 kb on - strand, within GFF2180 at 234.314 kb on - strand, within GFF2180 at 234.339 kb on + strand, within GFF2180 at 234.339 kb on + strand, within GFF2180 at 234.340 kb on - strand, within GFF2180 at 234.340 kb on - strand, within GFF2180 at 234.369 kb on + strand at 234.369 kb on + strand at 234.369 kb on + strand at 234.369 kb on + strand at 234.369 kb on + strand at 234.369 kb on + strand at 234.369 kb on + strand at 234.370 kb on - strand at 234.370 kb on - strand at 234.370 kb on - strand at 234.404 kb on - strand at 234.535 kb on + strand, within GFF2181 at 234.535 kb on + strand, within GFF2181 at 234.535 kb on + strand, within GFF2181 at 234.535 kb on + strand, within GFF2181 at 234.535 kb on + strand, within GFF2181 at 234.535 kb on + strand, within GFF2181 at 234.536 kb on - strand, within GFF2181 at 234.536 kb on - strand, within GFF2181 at 234.536 kb on - strand, within GFF2181 at 234.536 kb on - strand, within GFF2181 at 234.536 kb on - strand, within GFF2181 at 234.550 kb on + strand, within GFF2181 at 234.550 kb on + strand, within GFF2181 at 234.551 kb on - strand, within GFF2181 at 234.551 kb on - strand, within GFF2181 at 234.551 kb on - strand, within GFF2181 at 234.551 kb on - strand, within GFF2181 at 234.612 kb on + strand, within GFF2181 at 234.613 kb on - strand, within GFF2181 at 234.613 kb on - strand, within GFF2181 at 234.613 kb on - strand, within GFF2181 at 234.633 kb on + strand at 234.633 kb on + strand at 234.633 kb on + strand at 234.633 kb on + strand at 234.634 kb on - strand at 234.634 kb on - strand at 234.634 kb on - strand at 234.634 kb on - strand at 234.634 kb on - strand at 234.634 kb on - strand at 234.636 kb on - strand at 234.636 kb on - strand at 234.636 kb on - strand at 234.864 kb on + strand at 234.865 kb on - strand at 234.869 kb on + strand at 234.869 kb on + strand at 234.870 kb on - strand at 234.870 kb on - strand at 234.910 kb on + strand at 234.910 kb on + strand at 234.911 kb on - strand at 234.911 kb on - strand at 234.911 kb on - strand at 234.911 kb on - strand at 234.930 kb on + strand at 234.930 kb on + strand at 234.930 kb on + strand at 234.931 kb on - strand at 234.931 kb on - strand at 234.931 kb on - strand at 234.931 kb on - strand at 234.931 kb on - strand at 234.931 kb on - strand at 234.976 kb on + strand at 234.982 kb on - strand at 235.002 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.073 kb on + strand at 235.074 kb on - strand at 235.329 kb on + strand at 235.329 kb on + strand at 235.329 kb on + strand at 235.329 kb on + strand at 235.329 kb on + strand at 235.330 kb on - strand at 235.330 kb on - strand at 235.330 kb on - strand at 235.330 kb on - strand at 235.330 kb on - strand at 235.340 kb on + strand at 235.340 kb on + strand at 235.340 kb on + strand at 235.340 kb on + strand at 235.340 kb on + strand at 235.356 kb on + strand at 235.356 kb on + strand at 235.356 kb on + strand at 235.356 kb on + strand at 235.357 kb on - strand at 235.357 kb on - strand at 235.357 kb on - strand at 235.368 kb on + strand at 235.368 kb on + strand at 235.368 kb on + strand at 235.369 kb on - strand at 235.369 kb on - strand at 235.398 kb on + strand at 235.399 kb on - strand at 235.399 kb on - strand at 235.449 kb on + strand at 235.449 kb on + strand at 235.449 kb on + strand at 235.449 kb on + strand at 235.450 kb on - strand at 235.459 kb on + strand at 235.459 kb on + strand at 235.459 kb on + strand at 235.460 kb on - strand at 235.460 kb on - strand at 235.460 kb on - strand at 235.461 kb on + strand at 235.461 kb on + strand at 235.461 kb on + strand at 235.461 kb on + strand at 235.461 kb on + strand at 235.461 kb on + strand at 235.461 kb on + strand at 235.462 kb on - strand at 235.462 kb on - strand at 235.462 kb on - strand at 235.462 kb on - strand at 235.462 kb on - strand at 235.462 kb on - strand at 235.462 kb on - strand at 235.462 kb on - strand at 235.528 kb on - strand at 235.528 kb on - strand at 235.528 kb on - strand at 235.572 kb on + strand at 235.572 kb on + strand at 235.572 kb on + strand at 235.572 kb on + strand at 235.573 kb on - strand at 235.573 kb on - strand at 235.573 kb on - strand at 235.573 kb on - strand at 235.573 kb on - strand at 235.573 kb on - strand at 235.581 kb on + strand at 235.581 kb on + strand at 235.581 kb on + strand at 235.581 kb on + strand at 235.581 kb on + strand at 235.581 kb on + strand at 235.581 kb on + strand at 235.581 kb on + strand at 235.581 kb on + strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand at 235.582 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 233,529 + -0.4 233,556 + -0.5 233,556 + -1.0 233,557 - +0.5 233,557 - +0.3 233,557 - +0.6 233,557 - -0.1 233,666 - GFF2179 0.10 +0.1 233,695 + GFF2179 0.17 -0.8 233,695 + GFF2179 0.17 +0.3 234,004 + -1.6 234,004 + -0.4 234,004 + -0.2 234,004 + +0.2 234,005 - -0.4 234,005 - -0.2 234,005 - -0.4 234,005 - +0.2 234,123 + GFF2180 0.25 -0.2 234,123 + GFF2180 0.25 -0.7 234,123 + GFF2180 0.25 +1.7 234,124 - GFF2180 0.25 -0.3 234,124 - GFF2180 0.25 -0.1 234,124 - GFF2180 0.25 -0.6 234,313 + GFF2180 0.80 -0.3 234,313 + GFF2180 0.80 -1.9 234,313 + GFF2180 0.80 +0.6 234,313 + GFF2180 0.80 +0.3 234,313 + GFF2180 0.80 -1.2 234,314 - GFF2180 0.80 -0.9 234,314 - GFF2180 0.80 -0.3 234,314 - GFF2180 0.80 -0.2 234,314 - GFF2180 0.80 -0.7 234,314 - GFF2180 0.80 -0.2 234,339 + GFF2180 0.87 -0.5 234,339 + GFF2180 0.87 +0.2 234,340 - GFF2180 0.87 -0.4 234,340 - GFF2180 0.87 -0.5 234,369 + -0.6 234,369 + +0.2 234,369 + -0.3 234,369 + -1.0 234,369 + -1.8 234,369 + -2.1 234,369 + -1.1 234,370 - -0.8 234,370 - +0.4 234,370 - +0.0 234,404 - -0.4 234,535 + GFF2181 0.53 +0.8 234,535 + GFF2181 0.53 +0.4 234,535 + GFF2181 0.53 +0.2 234,535 + GFF2181 0.53 +0.8 234,535 + GFF2181 0.53 -1.0 234,535 + GFF2181 0.53 -0.7 234,536 - GFF2181 0.54 -0.3 234,536 - GFF2181 0.54 +0.4 234,536 - GFF2181 0.54 +0.1 234,536 - GFF2181 0.54 +0.1 234,536 - GFF2181 0.54 +0.1 234,550 + GFF2181 0.59 -0.7 234,550 + GFF2181 0.59 +0.3 234,551 - GFF2181 0.60 +0.6 234,551 - GFF2181 0.60 -1.2 234,551 - GFF2181 0.60 -0.6 234,551 - GFF2181 0.60 -0.4 234,612 + GFF2181 0.84 -0.2 234,613 - GFF2181 0.85 -0.2 234,613 - GFF2181 0.85 +1.0 234,613 - GFF2181 0.85 +0.7 234,633 + -2.4 234,633 + +0.1 234,633 + -0.4 234,633 + +1.0 234,634 - +0.2 234,634 - -1.0 234,634 - +0.0 234,634 - -0.8 234,634 - -1.2 234,634 - -0.6 234,636 - +0.7 234,636 - -1.0 234,636 - -0.2 234,864 + -0.2 234,865 - -0.8 234,869 + -0.2 234,869 + -0.2 234,870 - -0.7 234,870 - +0.1 234,910 + +0.4 234,910 + -1.5 234,911 - -0.7 234,911 - +1.8 234,911 - +0.0 234,911 - -0.5 234,930 + +0.4 234,930 + +0.1 234,930 + -0.2 234,931 - -1.0 234,931 - +2.6 234,931 - +0.2 234,931 - -1.5 234,931 - -1.3 234,931 - +0.1 234,976 + +0.4 234,982 - -2.3 235,002 + +1.4 235,073 + -0.7 235,073 + -0.0 235,073 + -0.3 235,073 + -0.3 235,073 + -0.5 235,073 + +0.6 235,073 + +0.5 235,073 + +0.1 235,073 + +0.3 235,073 + -0.7 235,074 - -1.1 235,329 + -0.5 235,329 + -2.3 235,329 + +0.3 235,329 + -0.2 235,329 + -1.5 235,330 - -0.6 235,330 - -1.5 235,330 - -0.7 235,330 - -1.2 235,330 - +0.5 235,340 + +0.7 235,340 + -1.0 235,340 + -0.8 235,340 + -0.4 235,340 + -1.3 235,356 + -1.4 235,356 + -0.7 235,356 + -0.4 235,356 + -1.6 235,357 - -2.4 235,357 - -2.6 235,357 - +0.3 235,368 + -0.2 235,368 + +0.6 235,368 + -2.3 235,369 - -0.8 235,369 - -1.0 235,398 + -1.9 235,399 - +0.7 235,399 - -0.6 235,449 + -2.3 235,449 + -1.7 235,449 + -1.2 235,449 + -0.6 235,450 - -0.4 235,459 + -1.2 235,459 + -0.7 235,459 + -1.5 235,460 - +1.7 235,460 - -0.5 235,460 - -1.3 235,461 + -1.1 235,461 + -0.8 235,461 + -3.0 235,461 + -1.3 235,461 + -0.2 235,461 + -0.7 235,461 + -0.2 235,462 - -1.3 235,462 - -1.3 235,462 - -1.4 235,462 - +0.1 235,462 - -1.2 235,462 - -0.4 235,462 - -1.9 235,462 - -0.9 235,528 - -0.7 235,528 - -0.2 235,528 - -2.8 235,572 + -0.3 235,572 + -1.0 235,572 + -0.7 235,572 + -0.2 235,573 - -1.7 235,573 - -1.5 235,573 - -0.1 235,573 - -1.2 235,573 - -1.5 235,573 - -1.0 235,581 + -0.3 235,581 + -1.0 235,581 + -1.6 235,581 + -0.5 235,581 + -0.4 235,581 + +0.3 235,581 + -0.7 235,581 + -0.9 235,581 + -1.1 235,582 - +0.5 235,582 - -0.7 235,582 - +0.3 235,582 - -1.7 235,582 - -1.2 235,582 - +0.3 235,582 - -1.6 235,582 - -0.5 235,582 - +0.8 235,582 - -1.5 235,582 - -1.5 235,582 - -2.0
Or see this region's nucleotide sequence