Strain Fitness in Variovorax sp. SCN45 around GFF2053

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2052 and GFF2053 are separated by 319 nucleotidesGFF2053 and GFF2054 are separated by 10 nucleotidesGFF2054 and GFF2055 are separated by 10 nucleotides GFF2052 - hypothetical protein, at 99,377 to 101,494 GFF2052 GFF2053 - Adenosylhomocysteinase (EC 3.3.1.1), at 101,814 to 103,253 GFF2053 GFF2054 - RNA binding methyltransferase FtsJ like, at 103,264 to 104,040 GFF2054 GFF2055 - 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20), at 104,051 to 104,875 GFF2055 Position (kb) 101 102 103 104Strain fitness (log2 ratio) -2 -1 0 1 2at 100.842 kb on + strand, within GFF2052at 100.842 kb on + strand, within GFF2052at 100.843 kb on - strand, within GFF2052at 100.843 kb on - strand, within GFF2052at 100.843 kb on - strand, within GFF2052at 100.843 kb on - strand, within GFF2052at 100.843 kb on - strand, within GFF2052at 100.843 kb on - strand, within GFF2052at 100.956 kb on + strand, within GFF2052at 100.956 kb on + strand, within GFF2052at 100.956 kb on + strand, within GFF2052at 100.956 kb on + strand, within GFF2052at 100.957 kb on - strand, within GFF2052at 100.957 kb on - strand, within GFF2052at 100.957 kb on - strand, within GFF2052at 100.957 kb on - strand, within GFF2052at 100.957 kb on - strand, within GFF2052at 100.957 kb on - strand, within GFF2052at 100.957 kb on - strand, within GFF2052at 100.957 kb on - strand, within GFF2052at 101.040 kb on + strand, within GFF2052at 101.040 kb on + strand, within GFF2052at 101.137 kb on + strand, within GFF2052at 101.139 kb on + strand, within GFF2052at 101.139 kb on + strand, within GFF2052at 101.139 kb on + strand, within GFF2052at 101.139 kb on + strand, within GFF2052at 101.139 kb on + strand, within GFF2052at 101.139 kb on + strand, within GFF2052at 101.139 kb on + strand, within GFF2052at 101.139 kb on + strand, within GFF2052at 101.139 kb on + strand, within GFF2052at 101.139 kb on + strand, within GFF2052at 101.139 kb on + strand, within GFF2052at 101.140 kb on - strand, within GFF2052at 101.140 kb on - strand, within GFF2052at 101.140 kb on - strand, within GFF2052at 101.140 kb on - strand, within GFF2052at 101.140 kb on - strand, within GFF2052at 101.140 kb on - strand, within GFF2052at 101.140 kb on - strand, within GFF2052at 101.140 kb on - strand, within GFF2052at 101.140 kb on - strand, within GFF2052at 101.140 kb on - strand, within GFF2052at 101.140 kb on - strand, within GFF2052at 101.140 kb on - strand, within GFF2052at 101.140 kb on - strand, within GFF2052at 101.140 kb on - strand, within GFF2052at 101.140 kb on - strand, within GFF2052at 101.140 kb on - strand, within GFF2052at 101.140 kb on - strand, within GFF2052at 101.140 kb on - strand, within GFF2052at 101.211 kb on + strand, within GFF2052at 101.265 kb on + strand, within GFF2052at 101.265 kb on + strand, within GFF2052at 101.265 kb on + strand, within GFF2052at 101.265 kb on + strand, within GFF2052at 101.266 kb on - strand, within GFF2052at 101.266 kb on - strand, within GFF2052at 101.274 kb on + strand, within GFF2052at 101.274 kb on + strand, within GFF2052at 101.274 kb on + strand, within GFF2052at 101.274 kb on + strand, within GFF2052at 101.274 kb on + strand, within GFF2052at 101.274 kb on + strand, within GFF2052at 101.274 kb on + strand, within GFF2052at 101.275 kb on - strand, within GFF2052at 101.275 kb on - strand, within GFF2052at 101.478 kb on + strandat 101.478 kb on + strandat 101.478 kb on + strandat 101.478 kb on + strandat 101.479 kb on - strandat 101.479 kb on - strandat 101.479 kb on - strandat 101.479 kb on - strandat 101.479 kb on - strandat 101.571 kb on - strandat 101.668 kb on + strandat 101.668 kb on + strandat 101.668 kb on + strandat 101.668 kb on + strandat 101.668 kb on + strandat 101.669 kb on - strandat 103.105 kb on - strand, within GFF2053at 103.243 kb on - strandat 103.248 kb on + strandat 103.249 kb on - strandat 103.453 kb on + strand, within GFF2054at 103.453 kb on + strand, within GFF2054at 103.453 kb on + strand, within GFF2054at 103.453 kb on + strand, within GFF2054at 103.454 kb on - strand, within GFF2054at 103.454 kb on - strand, within GFF2054at 103.454 kb on - strand, within GFF2054at 103.756 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.915 kb on + strand, within GFF2054at 103.915 kb on + strand, within GFF2054at 103.915 kb on + strand, within GFF2054at 103.916 kb on - strand, within GFF2054at 103.916 kb on - strand, within GFF2054at 103.916 kb on - strand, within GFF2054at 103.916 kb on - strand, within GFF2054at 104.038 kb on + strandat 104.038 kb on + strandat 104.038 kb on + strandat 104.039 kb on - strandat 104.039 kb on - strandat 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.136 kb on - strand, within GFF2055at 104.136 kb on - strand, within GFF2055at 104.136 kb on - strand, within GFF2055at 104.136 kb on - strand, within GFF2055at 104.136 kb on - strand, within GFF2055at 104.136 kb on - strand, within GFF2055at 104.168 kb on + strand, within GFF2055at 104.168 kb on + strand, within GFF2055at 104.168 kb on + strand, within GFF2055at 104.168 kb on + strand, within GFF2055at 104.169 kb on - strand, within GFF2055at 104.169 kb on - strand, within GFF2055at 104.169 kb on - strand, within GFF2055at 104.169 kb on - strand, within GFF2055at 104.169 kb on - strand, within GFF2055

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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100,842 + GFF2052 0.69 +0.4
100,842 + GFF2052 0.69 -1.5
100,843 - GFF2052 0.69 +0.5
100,843 - GFF2052 0.69 +1.7
100,843 - GFF2052 0.69 +0.9
100,843 - GFF2052 0.69 -1.3
100,843 - GFF2052 0.69 +1.0
100,843 - GFF2052 0.69 -1.3
100,956 + GFF2052 0.75 -0.5
100,956 + GFF2052 0.75 +0.4
100,956 + GFF2052 0.75 -0.7
100,956 + GFF2052 0.75 +0.3
100,957 - GFF2052 0.75 -0.2
100,957 - GFF2052 0.75 -0.9
100,957 - GFF2052 0.75 -0.0
100,957 - GFF2052 0.75 -0.5
100,957 - GFF2052 0.75 +0.8
100,957 - GFF2052 0.75 +0.5
100,957 - GFF2052 0.75 -0.1
100,957 - GFF2052 0.75 +1.2
101,040 + GFF2052 0.79 -2.6
101,040 + GFF2052 0.79 +0.1
101,137 + GFF2052 0.83 -0.8
101,139 + GFF2052 0.83 -0.3
101,139 + GFF2052 0.83 +0.0
101,139 + GFF2052 0.83 -0.3
101,139 + GFF2052 0.83 -0.7
101,139 + GFF2052 0.83 -0.5
101,139 + GFF2052 0.83 +0.3
101,139 + GFF2052 0.83 +0.3
101,139 + GFF2052 0.83 +0.7
101,139 + GFF2052 0.83 -0.0
101,139 + GFF2052 0.83 -0.5
101,139 + GFF2052 0.83 +0.5
101,140 - GFF2052 0.83 +0.6
101,140 - GFF2052 0.83 -0.7
101,140 - GFF2052 0.83 +0.8
101,140 - GFF2052 0.83 -0.4
101,140 - GFF2052 0.83 -0.4
101,140 - GFF2052 0.83 -0.4
101,140 - GFF2052 0.83 +0.0
101,140 - GFF2052 0.83 -0.5
101,140 - GFF2052 0.83 -1.4
101,140 - GFF2052 0.83 -0.1
101,140 - GFF2052 0.83 -1.3
101,140 - GFF2052 0.83 +0.3
101,140 - GFF2052 0.83 -0.6
101,140 - GFF2052 0.83 -0.5
101,140 - GFF2052 0.83 -0.2
101,140 - GFF2052 0.83 -0.4
101,140 - GFF2052 0.83 +0.1
101,140 - GFF2052 0.83 +0.2
101,211 + GFF2052 0.87 +0.3
101,265 + GFF2052 0.89 -0.9
101,265 + GFF2052 0.89 -1.1
101,265 + GFF2052 0.89 -0.7
101,265 + GFF2052 0.89 +0.6
101,266 - GFF2052 0.89 -0.3
101,266 - GFF2052 0.89 +0.6
101,274 + GFF2052 0.90 +0.1
101,274 + GFF2052 0.90 -1.0
101,274 + GFF2052 0.90 +0.0
101,274 + GFF2052 0.90 +0.3
101,274 + GFF2052 0.90 +0.3
101,274 + GFF2052 0.90 +0.3
101,274 + GFF2052 0.90 -0.0
101,275 - GFF2052 0.90 -0.3
101,275 - GFF2052 0.90 -1.4
101,478 + +0.8
101,478 + -1.1
101,478 + +0.3
101,478 + +1.1
101,479 - +1.0
101,479 - -1.3
101,479 - +0.2
101,479 - +1.1
101,479 - +0.4
101,571 - -1.5
101,668 + -0.1
101,668 + +0.4
101,668 + +0.3
101,668 + +0.7
101,668 + -1.0
101,669 - -0.4
103,105 - GFF2053 0.90 -1.0
103,243 - -0.5
103,248 + -0.7
103,249 - -0.7
103,453 + GFF2054 0.24 +0.3
103,453 + GFF2054 0.24 +0.6
103,453 + GFF2054 0.24 +0.5
103,453 + GFF2054 0.24 -0.5
103,454 - GFF2054 0.24 +0.0
103,454 - GFF2054 0.24 -2.2
103,454 - GFF2054 0.24 -0.1
103,756 + GFF2054 0.63 -2.4
103,891 + GFF2054 0.81 -0.7
103,891 + GFF2054 0.81 +0.1
103,891 + GFF2054 0.81 +0.5
103,891 + GFF2054 0.81 -1.2
103,891 + GFF2054 0.81 +1.0
103,891 + GFF2054 0.81 +0.3
103,891 + GFF2054 0.81 +0.0
103,891 + GFF2054 0.81 +1.6
103,891 + GFF2054 0.81 -0.6
103,891 + GFF2054 0.81 -0.8
103,891 + GFF2054 0.81 -0.3
103,891 + GFF2054 0.81 -0.8
103,891 + GFF2054 0.81 -0.2
103,891 + GFF2054 0.81 -0.1
103,891 + GFF2054 0.81 -0.5
103,891 + GFF2054 0.81 -1.0
103,891 + GFF2054 0.81 -0.7
103,891 + GFF2054 0.81 +0.4
103,891 + GFF2054 0.81 +0.8
103,891 + GFF2054 0.81 -0.2
103,891 + GFF2054 0.81 +2.0
103,891 + GFF2054 0.81 -1.2
103,891 + GFF2054 0.81 -0.1
103,891 + GFF2054 0.81 -0.2
103,892 - GFF2054 0.81 +0.3
103,892 - GFF2054 0.81 +0.8
103,892 - GFF2054 0.81 -0.7
103,892 - GFF2054 0.81 +0.1
103,892 - GFF2054 0.81 +0.7
103,892 - GFF2054 0.81 +0.4
103,892 - GFF2054 0.81 +0.1
103,892 - GFF2054 0.81 -0.1
103,892 - GFF2054 0.81 +0.1
103,892 - GFF2054 0.81 -0.1
103,892 - GFF2054 0.81 -0.8
103,892 - GFF2054 0.81 -1.2
103,892 - GFF2054 0.81 +0.8
103,892 - GFF2054 0.81 -0.8
103,892 - GFF2054 0.81 -0.3
103,892 - GFF2054 0.81 -0.5
103,892 - GFF2054 0.81 -1.5
103,892 - GFF2054 0.81 -0.1
103,892 - GFF2054 0.81 -0.2
103,892 - GFF2054 0.81 +0.5
103,892 - GFF2054 0.81 +0.9
103,892 - GFF2054 0.81 +0.0
103,892 - GFF2054 0.81 -0.2
103,892 - GFF2054 0.81 -0.2
103,892 - GFF2054 0.81 -0.5
103,892 - GFF2054 0.81 +0.6
103,892 - GFF2054 0.81 -0.2
103,892 - GFF2054 0.81 +1.4
103,892 - GFF2054 0.81 -0.5
103,892 - GFF2054 0.81 -0.1
103,892 - GFF2054 0.81 +0.3
103,915 + GFF2054 0.84 -1.2
103,915 + GFF2054 0.84 +1.2
103,915 + GFF2054 0.84 -2.4
103,916 - GFF2054 0.84 -0.7
103,916 - GFF2054 0.84 -0.2
103,916 - GFF2054 0.84 -1.9
103,916 - GFF2054 0.84 -1.5
104,038 + +0.4
104,038 + -0.0
104,038 + -0.6
104,039 - -0.9
104,039 - +0.5
104,135 + GFF2055 0.10 -0.3
104,135 + GFF2055 0.10 +1.4
104,135 + GFF2055 0.10 +1.3
104,135 + GFF2055 0.10 +0.7
104,135 + GFF2055 0.10 -0.5
104,135 + GFF2055 0.10 -1.4
104,135 + GFF2055 0.10 -0.2
104,135 + GFF2055 0.10 -0.6
104,135 + GFF2055 0.10 -0.7
104,135 + GFF2055 0.10 -1.2
104,135 + GFF2055 0.10 +0.3
104,135 + GFF2055 0.10 -0.0
104,135 + GFF2055 0.10 -0.2
104,136 - GFF2055 0.10 -0.2
104,136 - GFF2055 0.10 -0.5
104,136 - GFF2055 0.10 -0.6
104,136 - GFF2055 0.10 -0.1
104,136 - GFF2055 0.10 +0.1
104,136 - GFF2055 0.10 +0.4
104,168 + GFF2055 0.14 +0.4
104,168 + GFF2055 0.14 -0.0
104,168 + GFF2055 0.14 -2.7
104,168 + GFF2055 0.14 -0.2
104,169 - GFF2055 0.14 -1.2
104,169 - GFF2055 0.14 +1.4
104,169 - GFF2055 0.14 -0.4
104,169 - GFF2055 0.14 -0.9
104,169 - GFF2055 0.14 -0.0

Or see this region's nucleotide sequence