Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2040 and GFF2041 are separated by 1 nucleotides GFF2041 and GFF2042 are separated by 99 nucleotides
GFF2040 - Putative drug efflux protein, at 88,226 to 89,476
GFF2040
GFF2041 - Haloacid dehalogenase-like hydrolase, at 89,478 to 90,311
GFF2041
GFF2042 - Efflux ABC transporter, ATP-binding protein, at 90,411 to 91,406
GFF2042
Position (kb) 89
90
91 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 88.719 kb on + strand, within GFF2040 at 88.719 kb on + strand, within GFF2040 at 89.318 kb on + strand, within GFF2040 at 89.319 kb on - strand, within GFF2040 at 89.319 kb on - strand, within GFF2040 at 89.319 kb on - strand, within GFF2040 at 89.319 kb on - strand, within GFF2040 at 89.319 kb on - strand, within GFF2040 at 89.396 kb on + strand at 89.397 kb on - strand at 89.397 kb on - strand at 89.397 kb on - strand at 89.397 kb on - strand at 89.426 kb on + strand at 89.426 kb on + strand at 89.426 kb on + strand at 89.427 kb on - strand at 89.479 kb on + strand at 89.479 kb on + strand at 89.479 kb on + strand at 89.479 kb on + strand at 89.479 kb on + strand at 89.479 kb on + strand at 89.479 kb on + strand at 89.479 kb on + strand at 89.480 kb on - strand at 89.480 kb on - strand at 89.480 kb on - strand at 89.480 kb on - strand at 89.480 kb on - strand at 89.551 kb on + strand at 89.552 kb on - strand at 89.552 kb on - strand at 89.552 kb on - strand at 89.552 kb on - strand at 89.552 kb on - strand at 89.659 kb on + strand, within GFF2041 at 89.659 kb on + strand, within GFF2041 at 89.659 kb on + strand, within GFF2041 at 89.659 kb on + strand, within GFF2041 at 89.659 kb on + strand, within GFF2041 at 89.660 kb on - strand, within GFF2041 at 89.660 kb on - strand, within GFF2041 at 89.660 kb on - strand, within GFF2041 at 89.660 kb on - strand, within GFF2041 at 89.749 kb on + strand, within GFF2041 at 89.992 kb on + strand, within GFF2041 at 89.992 kb on + strand, within GFF2041 at 89.993 kb on - strand, within GFF2041 at 89.993 kb on - strand, within GFF2041 at 90.365 kb on + strand at 90.365 kb on + strand at 90.365 kb on + strand at 90.365 kb on + strand at 90.365 kb on + strand at 90.365 kb on + strand at 90.365 kb on + strand at 90.366 kb on - strand at 90.366 kb on - strand at 90.366 kb on - strand at 90.366 kb on - strand at 90.366 kb on - strand at 90.366 kb on - strand at 90.366 kb on - strand at 90.447 kb on + strand at 90.447 kb on + strand at 90.448 kb on - strand at 90.448 kb on - strand at 90.448 kb on - strand at 90.577 kb on + strand, within GFF2042 at 90.577 kb on + strand, within GFF2042 at 90.577 kb on + strand, within GFF2042 at 90.577 kb on + strand, within GFF2042 at 90.577 kb on + strand, within GFF2042 at 90.577 kb on + strand, within GFF2042 at 90.578 kb on - strand, within GFF2042 at 90.578 kb on - strand, within GFF2042 at 90.578 kb on - strand, within GFF2042 at 90.578 kb on - strand, within GFF2042 at 90.578 kb on - strand, within GFF2042 at 90.578 kb on - strand, within GFF2042 at 90.578 kb on - strand, within GFF2042 at 90.578 kb on - strand, within GFF2042 at 90.578 kb on - strand, within GFF2042 at 90.786 kb on + strand, within GFF2042 at 90.786 kb on + strand, within GFF2042 at 90.786 kb on + strand, within GFF2042 at 90.786 kb on + strand, within GFF2042 at 90.786 kb on + strand, within GFF2042 at 90.786 kb on + strand, within GFF2042 at 90.786 kb on + strand, within GFF2042 at 90.787 kb on - strand, within GFF2042 at 90.787 kb on - strand, within GFF2042 at 90.787 kb on - strand, within GFF2042 at 90.787 kb on - strand, within GFF2042 at 90.787 kb on - strand, within GFF2042 at 90.787 kb on - strand, within GFF2042
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 88,719 + GFF2040 0.39 +0.2 88,719 + GFF2040 0.39 -1.0 89,318 + GFF2040 0.87 -0.5 89,319 - GFF2040 0.87 -0.3 89,319 - GFF2040 0.87 +0.0 89,319 - GFF2040 0.87 +0.3 89,319 - GFF2040 0.87 -0.2 89,319 - GFF2040 0.87 +0.2 89,396 + -0.4 89,397 - -1.6 89,397 - +0.4 89,397 - +0.6 89,397 - -0.0 89,426 + -0.1 89,426 + -0.8 89,426 + +0.4 89,427 - +0.0 89,479 + -0.6 89,479 + -1.2 89,479 + -0.4 89,479 + +0.2 89,479 + -0.1 89,479 + +0.1 89,479 + -0.8 89,479 + +1.3 89,480 - -0.7 89,480 - -0.9 89,480 - +2.3 89,480 - -2.3 89,480 - +0.6 89,551 + -0.4 89,552 - -0.3 89,552 - -0.3 89,552 - +0.1 89,552 - -0.5 89,552 - -1.2 89,659 + GFF2041 0.22 -0.6 89,659 + GFF2041 0.22 +0.1 89,659 + GFF2041 0.22 -1.1 89,659 + GFF2041 0.22 -0.2 89,659 + GFF2041 0.22 -0.2 89,660 - GFF2041 0.22 -3.0 89,660 - GFF2041 0.22 +1.3 89,660 - GFF2041 0.22 -0.8 89,660 - GFF2041 0.22 -0.2 89,749 + GFF2041 0.32 +1.8 89,992 + GFF2041 0.62 +0.8 89,992 + GFF2041 0.62 -1.4 89,993 - GFF2041 0.62 +0.5 89,993 - GFF2041 0.62 +0.0 90,365 + +0.3 90,365 + +0.0 90,365 + +0.3 90,365 + -0.7 90,365 + -0.5 90,365 + +0.3 90,365 + -0.1 90,366 - +0.8 90,366 - -0.2 90,366 - -1.7 90,366 - +0.8 90,366 - -0.7 90,366 - -0.6 90,366 - -0.0 90,447 + +0.1 90,447 + -1.0 90,448 - +0.3 90,448 - -0.6 90,448 - -0.6 90,577 + GFF2042 0.17 +0.0 90,577 + GFF2042 0.17 -0.4 90,577 + GFF2042 0.17 +1.3 90,577 + GFF2042 0.17 +0.1 90,577 + GFF2042 0.17 -1.8 90,577 + GFF2042 0.17 -0.3 90,578 - GFF2042 0.17 +1.1 90,578 - GFF2042 0.17 -0.5 90,578 - GFF2042 0.17 -0.4 90,578 - GFF2042 0.17 +0.9 90,578 - GFF2042 0.17 -1.6 90,578 - GFF2042 0.17 -0.2 90,578 - GFF2042 0.17 +0.3 90,578 - GFF2042 0.17 -1.0 90,578 - GFF2042 0.17 +0.8 90,786 + GFF2042 0.38 +0.6 90,786 + GFF2042 0.38 -1.3 90,786 + GFF2042 0.38 +0.8 90,786 + GFF2042 0.38 -0.0 90,786 + GFF2042 0.38 -0.0 90,786 + GFF2042 0.38 +0.3 90,786 + GFF2042 0.38 -0.6 90,787 - GFF2042 0.38 +1.8 90,787 - GFF2042 0.38 -0.4 90,787 - GFF2042 0.38 -0.1 90,787 - GFF2042 0.38 -1.3 90,787 - GFF2042 0.38 -0.8 90,787 - GFF2042 0.38 -0.3
Or see this region's nucleotide sequence