Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2031 and GFF2032 are separated by 186 nucleotides GFF2032 and GFF2033 are separated by 7 nucleotides
GFF2031 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 73,765 to 74,877
GFF2031
GFF2032 - Excinuclease ABC subunit A, dimeric form, at 75,064 to 80,907
GFF2032
GFF2033 - no description, at 80,915 to 81,871
GFF2033
Position (kb) 75
76
77
78
79
80
81 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 74.270 kb on + strand, within GFF2031 at 74.270 kb on + strand, within GFF2031 at 74.270 kb on + strand, within GFF2031 at 74.270 kb on + strand, within GFF2031 at 74.271 kb on - strand, within GFF2031 at 74.381 kb on + strand, within GFF2031 at 74.381 kb on + strand, within GFF2031 at 74.381 kb on + strand, within GFF2031 at 74.381 kb on + strand, within GFF2031 at 74.382 kb on - strand, within GFF2031 at 74.382 kb on - strand, within GFF2031 at 74.382 kb on - strand, within GFF2031 at 74.382 kb on - strand, within GFF2031 at 74.382 kb on - strand, within GFF2031 at 74.382 kb on - strand, within GFF2031 at 74.382 kb on - strand, within GFF2031 at 74.382 kb on - strand, within GFF2031 at 74.450 kb on + strand, within GFF2031 at 74.537 kb on + strand, within GFF2031 at 74.537 kb on + strand, within GFF2031 at 74.538 kb on - strand, within GFF2031 at 74.538 kb on - strand, within GFF2031 at 74.538 kb on - strand, within GFF2031 at 74.538 kb on - strand, within GFF2031 at 74.935 kb on + strand at 74.935 kb on + strand at 74.936 kb on - strand at 75.004 kb on - strand at 75.004 kb on - strand at 75.004 kb on - strand at 75.034 kb on - strand at 75.205 kb on + strand at 75.205 kb on + strand at 75.205 kb on + strand at 75.205 kb on + strand at 75.226 kb on + strand at 75.227 kb on - strand at 75.247 kb on + strand at 75.247 kb on + strand at 75.475 kb on + strand at 75.476 kb on - strand at 75.476 kb on - strand at 75.476 kb on - strand at 76.129 kb on + strand, within GFF2032 at 76.129 kb on + strand, within GFF2032 at 76.129 kb on + strand, within GFF2032 at 76.129 kb on + strand, within GFF2032 at 76.130 kb on - strand, within GFF2032 at 76.130 kb on - strand, within GFF2032 at 76.201 kb on + strand, within GFF2032 at 76.201 kb on + strand, within GFF2032 at 76.201 kb on + strand, within GFF2032 at 76.201 kb on + strand, within GFF2032 at 76.234 kb on + strand, within GFF2032 at 76.234 kb on + strand, within GFF2032 at 76.235 kb on - strand, within GFF2032 at 76.243 kb on + strand, within GFF2032 at 76.243 kb on + strand, within GFF2032 at 76.243 kb on + strand, within GFF2032 at 76.243 kb on + strand, within GFF2032 at 76.244 kb on - strand, within GFF2032 at 76.645 kb on + strand, within GFF2032 at 76.646 kb on - strand, within GFF2032 at 76.646 kb on - strand, within GFF2032 at 76.658 kb on + strand, within GFF2032 at 76.658 kb on + strand, within GFF2032 at 76.658 kb on + strand, within GFF2032 at 76.658 kb on + strand, within GFF2032 at 76.658 kb on + strand, within GFF2032 at 76.659 kb on - strand, within GFF2032 at 76.659 kb on - strand, within GFF2032 at 77.008 kb on + strand, within GFF2032 at 77.008 kb on + strand, within GFF2032 at 77.008 kb on + strand, within GFF2032 at 77.009 kb on - strand, within GFF2032 at 77.009 kb on - strand, within GFF2032 at 77.186 kb on + strand, within GFF2032 at 77.186 kb on + strand, within GFF2032 at 77.186 kb on + strand, within GFF2032 at 77.187 kb on - strand, within GFF2032 at 77.187 kb on - strand, within GFF2032 at 77.344 kb on + strand, within GFF2032 at 77.344 kb on + strand, within GFF2032 at 77.345 kb on - strand, within GFF2032 at 77.512 kb on + strand, within GFF2032 at 77.512 kb on + strand, within GFF2032 at 77.512 kb on + strand, within GFF2032 at 77.513 kb on - strand, within GFF2032 at 77.513 kb on - strand, within GFF2032 at 77.513 kb on - strand, within GFF2032 at 77.513 kb on - strand, within GFF2032 at 77.513 kb on - strand, within GFF2032 at 77.593 kb on + strand, within GFF2032 at 77.593 kb on + strand, within GFF2032 at 77.593 kb on + strand, within GFF2032 at 77.593 kb on + strand, within GFF2032 at 77.593 kb on + strand, within GFF2032 at 77.593 kb on + strand, within GFF2032 at 77.594 kb on - strand, within GFF2032 at 77.594 kb on - strand, within GFF2032 at 77.594 kb on - strand, within GFF2032 at 77.594 kb on - strand, within GFF2032 at 77.594 kb on - strand, within GFF2032 at 77.704 kb on + strand, within GFF2032 at 77.704 kb on + strand, within GFF2032 at 77.705 kb on - strand, within GFF2032 at 77.705 kb on - strand, within GFF2032 at 77.705 kb on - strand, within GFF2032 at 77.705 kb on - strand, within GFF2032 at 77.705 kb on - strand, within GFF2032 at 77.705 kb on - strand, within GFF2032 at 78.094 kb on + strand, within GFF2032 at 78.095 kb on - strand, within GFF2032 at 78.095 kb on - strand, within GFF2032 at 78.121 kb on + strand, within GFF2032 at 78.121 kb on + strand, within GFF2032 at 78.122 kb on - strand, within GFF2032 at 78.151 kb on + strand, within GFF2032 at 78.152 kb on - strand, within GFF2032 at 78.152 kb on - strand, within GFF2032 at 78.152 kb on - strand, within GFF2032 at 78.152 kb on - strand, within GFF2032 at 78.337 kb on + strand, within GFF2032 at 78.338 kb on - strand, within GFF2032 at 78.358 kb on + strand, within GFF2032 at 78.358 kb on + strand, within GFF2032 at 78.359 kb on - strand, within GFF2032 at 78.409 kb on + strand, within GFF2032 at 78.409 kb on + strand, within GFF2032 at 78.409 kb on + strand, within GFF2032 at 78.409 kb on + strand, within GFF2032 at 78.409 kb on + strand, within GFF2032 at 78.514 kb on + strand, within GFF2032 at 78.514 kb on + strand, within GFF2032 at 78.514 kb on + strand, within GFF2032 at 78.515 kb on - strand, within GFF2032 at 78.515 kb on - strand, within GFF2032 at 78.515 kb on - strand, within GFF2032 at 78.515 kb on - strand, within GFF2032 at 78.515 kb on - strand, within GFF2032 at 78.664 kb on + strand, within GFF2032 at 78.664 kb on + strand, within GFF2032 at 78.664 kb on + strand, within GFF2032 at 78.664 kb on + strand, within GFF2032 at 78.665 kb on - strand, within GFF2032 at 78.665 kb on - strand, within GFF2032 at 78.665 kb on - strand, within GFF2032 at 78.665 kb on - strand, within GFF2032 at 78.665 kb on - strand, within GFF2032 at 78.998 kb on - strand, within GFF2032 at 78.998 kb on - strand, within GFF2032 at 79.027 kb on + strand, within GFF2032 at 79.027 kb on + strand, within GFF2032 at 79.028 kb on - strand, within GFF2032 at 79.028 kb on - strand, within GFF2032 at 79.426 kb on + strand, within GFF2032 at 79.427 kb on - strand, within GFF2032 at 79.427 kb on - strand, within GFF2032 at 79.525 kb on + strand, within GFF2032 at 79.525 kb on + strand, within GFF2032 at 79.525 kb on + strand, within GFF2032 at 79.525 kb on + strand, within GFF2032 at 79.525 kb on + strand, within GFF2032 at 79.525 kb on + strand, within GFF2032 at 79.525 kb on + strand, within GFF2032 at 79.525 kb on + strand, within GFF2032 at 79.525 kb on + strand, within GFF2032 at 79.525 kb on + strand, within GFF2032 at 79.526 kb on - strand, within GFF2032 at 79.526 kb on - strand, within GFF2032 at 79.526 kb on - strand, within GFF2032 at 79.526 kb on - strand, within GFF2032 at 79.526 kb on - strand, within GFF2032 at 79.526 kb on - strand, within GFF2032 at 79.769 kb on - strand, within GFF2032 at 79.769 kb on - strand, within GFF2032 at 80.089 kb on + strand, within GFF2032 at 80.090 kb on - strand, within GFF2032 at 80.090 kb on - strand, within GFF2032 at 80.108 kb on + strand, within GFF2032 at 80.164 kb on + strand, within GFF2032 at 80.164 kb on + strand, within GFF2032 at 80.164 kb on + strand, within GFF2032 at 80.164 kb on + strand, within GFF2032 at 80.165 kb on - strand, within GFF2032 at 80.165 kb on - strand, within GFF2032 at 80.165 kb on - strand, within GFF2032 at 80.165 kb on - strand, within GFF2032 at 80.165 kb on - strand, within GFF2032 at 80.165 kb on - strand, within GFF2032 at 80.165 kb on - strand, within GFF2032 at 80.165 kb on - strand, within GFF2032 at 80.165 kb on - strand, within GFF2032 at 80.165 kb on - strand, within GFF2032 at 80.512 kb on + strand at 80.513 kb on - strand at 80.513 kb on - strand at 80.641 kb on + strand at 80.641 kb on + strand at 80.641 kb on + strand at 80.641 kb on + strand at 80.641 kb on + strand at 80.641 kb on + strand at 80.641 kb on + strand at 80.641 kb on + strand at 80.641 kb on + strand at 80.642 kb on - strand at 80.642 kb on - strand at 80.642 kb on - strand at 81.119 kb on + strand, within GFF2033 at 81.120 kb on - strand, within GFF2033 at 81.323 kb on + strand, within GFF2033 at 81.323 kb on + strand, within GFF2033 at 81.323 kb on + strand, within GFF2033 at 81.323 kb on + strand, within GFF2033 at 81.324 kb on - strand, within GFF2033 at 81.324 kb on - strand, within GFF2033 at 81.324 kb on - strand, within GFF2033 at 81.837 kb on + strand at 81.837 kb on + strand at 81.837 kb on + strand at 81.837 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 74,270 + GFF2031 0.45 -0.3 74,270 + GFF2031 0.45 -1.4 74,270 + GFF2031 0.45 -0.2 74,270 + GFF2031 0.45 -0.5 74,271 - GFF2031 0.45 -1.6 74,381 + GFF2031 0.55 -0.4 74,381 + GFF2031 0.55 -0.5 74,381 + GFF2031 0.55 -0.2 74,381 + GFF2031 0.55 +0.3 74,382 - GFF2031 0.55 +0.5 74,382 - GFF2031 0.55 -1.1 74,382 - GFF2031 0.55 -0.2 74,382 - GFF2031 0.55 -0.2 74,382 - GFF2031 0.55 +0.2 74,382 - GFF2031 0.55 -2.2 74,382 - GFF2031 0.55 +0.8 74,382 - GFF2031 0.55 -0.5 74,450 + GFF2031 0.62 -0.7 74,537 + GFF2031 0.69 -0.5 74,537 + GFF2031 0.69 +0.2 74,538 - GFF2031 0.69 +0.8 74,538 - GFF2031 0.69 +0.7 74,538 - GFF2031 0.69 -0.3 74,538 - GFF2031 0.69 -0.5 74,935 + +0.7 74,935 + -1.0 74,936 - -0.1 75,004 - -0.4 75,004 - -0.5 75,004 - +0.4 75,034 - +0.6 75,205 + +0.5 75,205 + -0.9 75,205 + +0.8 75,205 + -1.2 75,226 + +1.3 75,227 - -0.7 75,247 + -1.6 75,247 + -0.1 75,475 + -0.3 75,476 - -0.2 75,476 - +0.6 75,476 - -0.1 76,129 + GFF2032 0.18 -0.2 76,129 + GFF2032 0.18 +2.4 76,129 + GFF2032 0.18 -0.3 76,129 + GFF2032 0.18 -0.6 76,130 - GFF2032 0.18 +0.9 76,130 - GFF2032 0.18 -0.8 76,201 + GFF2032 0.19 -0.7 76,201 + GFF2032 0.19 -2.3 76,201 + GFF2032 0.19 -0.2 76,201 + GFF2032 0.19 +0.0 76,234 + GFF2032 0.20 +1.4 76,234 + GFF2032 0.20 -0.7 76,235 - GFF2032 0.20 -0.2 76,243 + GFF2032 0.20 -1.2 76,243 + GFF2032 0.20 -0.7 76,243 + GFF2032 0.20 -0.2 76,243 + GFF2032 0.20 +0.4 76,244 - GFF2032 0.20 -1.0 76,645 + GFF2032 0.27 +0.4 76,646 - GFF2032 0.27 -0.2 76,646 - GFF2032 0.27 -2.4 76,658 + GFF2032 0.27 -0.2 76,658 + GFF2032 0.27 +0.1 76,658 + GFF2032 0.27 -0.9 76,658 + GFF2032 0.27 -0.7 76,658 + GFF2032 0.27 -2.6 76,659 - GFF2032 0.27 +0.4 76,659 - GFF2032 0.27 -0.2 77,008 + GFF2032 0.33 +0.1 77,008 + GFF2032 0.33 -0.1 77,008 + GFF2032 0.33 +0.8 77,009 - GFF2032 0.33 -0.7 77,009 - GFF2032 0.33 +0.9 77,186 + GFF2032 0.36 +0.3 77,186 + GFF2032 0.36 -1.0 77,186 + GFF2032 0.36 -0.8 77,187 - GFF2032 0.36 +0.6 77,187 - GFF2032 0.36 -0.2 77,344 + GFF2032 0.39 +0.3 77,344 + GFF2032 0.39 +0.2 77,345 - GFF2032 0.39 +1.8 77,512 + GFF2032 0.42 -1.5 77,512 + GFF2032 0.42 -1.8 77,512 + GFF2032 0.42 -1.2 77,513 - GFF2032 0.42 -1.9 77,513 - GFF2032 0.42 -0.0 77,513 - GFF2032 0.42 -0.4 77,513 - GFF2032 0.42 +0.1 77,513 - GFF2032 0.42 -0.9 77,593 + GFF2032 0.43 -0.9 77,593 + GFF2032 0.43 -0.5 77,593 + GFF2032 0.43 +1.2 77,593 + GFF2032 0.43 +0.5 77,593 + GFF2032 0.43 +0.3 77,593 + GFF2032 0.43 -0.7 77,594 - GFF2032 0.43 +0.8 77,594 - GFF2032 0.43 -1.1 77,594 - GFF2032 0.43 -0.2 77,594 - GFF2032 0.43 -0.8 77,594 - GFF2032 0.43 +0.3 77,704 + GFF2032 0.45 +0.1 77,704 + GFF2032 0.45 -1.9 77,705 - GFF2032 0.45 -0.5 77,705 - GFF2032 0.45 +0.0 77,705 - GFF2032 0.45 -0.1 77,705 - GFF2032 0.45 -2.7 77,705 - GFF2032 0.45 +0.0 77,705 - GFF2032 0.45 -0.1 78,094 + GFF2032 0.52 -1.0 78,095 - GFF2032 0.52 +0.1 78,095 - GFF2032 0.52 -0.2 78,121 + GFF2032 0.52 -1.4 78,121 + GFF2032 0.52 -0.1 78,122 - GFF2032 0.52 +0.3 78,151 + GFF2032 0.53 -1.7 78,152 - GFF2032 0.53 -1.0 78,152 - GFF2032 0.53 -0.4 78,152 - GFF2032 0.53 +0.1 78,152 - GFF2032 0.53 +1.3 78,337 + GFF2032 0.56 -0.2 78,338 - GFF2032 0.56 +0.1 78,358 + GFF2032 0.56 +1.8 78,358 + GFF2032 0.56 -2.3 78,359 - GFF2032 0.56 +1.4 78,409 + GFF2032 0.57 +1.0 78,409 + GFF2032 0.57 +0.6 78,409 + GFF2032 0.57 -0.3 78,409 + GFF2032 0.57 -0.7 78,409 + GFF2032 0.57 +0.1 78,514 + GFF2032 0.59 -0.3 78,514 + GFF2032 0.59 +0.1 78,514 + GFF2032 0.59 -2.0 78,515 - GFF2032 0.59 -1.0 78,515 - GFF2032 0.59 -0.9 78,515 - GFF2032 0.59 -0.5 78,515 - GFF2032 0.59 -0.5 78,515 - GFF2032 0.59 -0.4 78,664 + GFF2032 0.62 +0.0 78,664 + GFF2032 0.62 -1.2 78,664 + GFF2032 0.62 -1.9 78,664 + GFF2032 0.62 -0.3 78,665 - GFF2032 0.62 +0.1 78,665 - GFF2032 0.62 +1.3 78,665 - GFF2032 0.62 -1.1 78,665 - GFF2032 0.62 -0.0 78,665 - GFF2032 0.62 -0.9 78,998 - GFF2032 0.67 -0.9 78,998 - GFF2032 0.67 -0.6 79,027 + GFF2032 0.68 -2.0 79,027 + GFF2032 0.68 +0.1 79,028 - GFF2032 0.68 -0.3 79,028 - GFF2032 0.68 +0.7 79,426 + GFF2032 0.75 +0.7 79,427 - GFF2032 0.75 -0.2 79,427 - GFF2032 0.75 -0.6 79,525 + GFF2032 0.76 -0.2 79,525 + GFF2032 0.76 -0.7 79,525 + GFF2032 0.76 -0.1 79,525 + GFF2032 0.76 -0.2 79,525 + GFF2032 0.76 -0.4 79,525 + GFF2032 0.76 +0.0 79,525 + GFF2032 0.76 +0.3 79,525 + GFF2032 0.76 -1.0 79,525 + GFF2032 0.76 +0.9 79,525 + GFF2032 0.76 -0.3 79,526 - GFF2032 0.76 -0.2 79,526 - GFF2032 0.76 -0.5 79,526 - GFF2032 0.76 -0.7 79,526 - GFF2032 0.76 -0.3 79,526 - GFF2032 0.76 -0.7 79,526 - GFF2032 0.76 +1.3 79,769 - GFF2032 0.81 +0.0 79,769 - GFF2032 0.81 -0.1 80,089 + GFF2032 0.86 +0.0 80,090 - GFF2032 0.86 -0.3 80,090 - GFF2032 0.86 +0.3 80,108 + GFF2032 0.86 -1.2 80,164 + GFF2032 0.87 +0.1 80,164 + GFF2032 0.87 +0.8 80,164 + GFF2032 0.87 -3.1 80,164 + GFF2032 0.87 -0.3 80,165 - GFF2032 0.87 -0.2 80,165 - GFF2032 0.87 -0.1 80,165 - GFF2032 0.87 -0.5 80,165 - GFF2032 0.87 -0.9 80,165 - GFF2032 0.87 -0.3 80,165 - GFF2032 0.87 -0.8 80,165 - GFF2032 0.87 -0.0 80,165 - GFF2032 0.87 +1.8 80,165 - GFF2032 0.87 -0.5 80,165 - GFF2032 0.87 -1.9 80,512 + -1.4 80,513 - -0.3 80,513 - +0.0 80,641 + -0.0 80,641 + -0.6 80,641 + -0.5 80,641 + -0.1 80,641 + -0.9 80,641 + +0.3 80,641 + -0.5 80,641 + -0.7 80,641 + -0.7 80,642 - +0.0 80,642 - +0.4 80,642 - +0.3 81,119 + GFF2033 0.21 -0.2 81,120 - GFF2033 0.21 -0.1 81,323 + GFF2033 0.43 -0.7 81,323 + GFF2033 0.43 -1.6 81,323 + GFF2033 0.43 -0.6 81,323 + GFF2033 0.43 -1.0 81,324 - GFF2033 0.43 +0.3 81,324 - GFF2033 0.43 +0.2 81,324 - GFF2033 0.43 +0.6 81,837 + -0.5 81,837 + -0.9 81,837 + -0.6 81,837 + -1.8
Or see this region's nucleotide sequence