Strain Fitness in Variovorax sp. SCN45 around GFF1912

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1911 and GFF1912 are separated by 0 nucleotidesGFF1912 and GFF1913 are separated by 106 nucleotidesGFF1913 and GFF1914 are separated by 78 nucleotides GFF1911 - ABC transporter, substrate-binding protein (cluster 11, riboflavin/purine nucleoside/unknown), at 591,103 to 592,194 GFF1911 GFF1912 - Transcriptional regulator, LysR family, at 592,195 to 593,076 GFF1912 GFF1913 - Short-chain dehydrogenase, at 593,183 to 593,788 GFF1913 GFF1914 - Guanine deaminase (EC 3.5.4.3), at 593,867 to 595,153 GFF1914 Position (kb) 592 593 594Strain fitness (log2 ratio) -2 -1 0 1 2 3at 591.208 kb on + strandat 591.208 kb on + strandat 591.209 kb on - strandat 591.209 kb on - strandat 591.209 kb on - strandat 591.209 kb on - strandat 591.209 kb on - strandat 591.209 kb on - strandat 591.304 kb on + strand, within GFF1911at 591.304 kb on + strand, within GFF1911at 591.304 kb on + strand, within GFF1911at 591.304 kb on + strand, within GFF1911at 591.304 kb on + strand, within GFF1911at 591.304 kb on + strand, within GFF1911at 591.304 kb on + strand, within GFF1911at 591.304 kb on + strand, within GFF1911at 591.304 kb on + strand, within GFF1911at 591.305 kb on - strand, within GFF1911at 591.305 kb on - strand, within GFF1911at 591.305 kb on - strand, within GFF1911at 591.305 kb on - strand, within GFF1911at 591.305 kb on - strand, within GFF1911at 591.305 kb on - strand, within GFF1911at 591.305 kb on - strand, within GFF1911at 591.401 kb on - strand, within GFF1911at 591.401 kb on - strand, within GFF1911at 591.466 kb on + strand, within GFF1911at 591.505 kb on + strand, within GFF1911at 591.506 kb on - strand, within GFF1911at 591.508 kb on + strand, within GFF1911at 591.508 kb on + strand, within GFF1911at 591.508 kb on + strand, within GFF1911at 591.509 kb on - strand, within GFF1911at 591.509 kb on - strand, within GFF1911at 591.509 kb on - strand, within GFF1911at 591.572 kb on - strand, within GFF1911at 591.572 kb on - strand, within GFF1911at 591.814 kb on + strand, within GFF1911at 591.815 kb on - strand, within GFF1911at 591.883 kb on + strand, within GFF1911at 591.883 kb on + strand, within GFF1911at 591.884 kb on - strand, within GFF1911at 591.886 kb on + strand, within GFF1911at 591.886 kb on + strand, within GFF1911at 591.886 kb on + strand, within GFF1911at 591.886 kb on + strand, within GFF1911at 591.886 kb on + strand, within GFF1911at 591.886 kb on + strand, within GFF1911at 591.886 kb on + strand, within GFF1911at 591.886 kb on + strand, within GFF1911at 591.886 kb on + strand, within GFF1911at 591.887 kb on - strand, within GFF1911at 591.887 kb on - strand, within GFF1911at 591.887 kb on - strand, within GFF1911at 591.992 kb on + strand, within GFF1911at 591.992 kb on + strand, within GFF1911at 591.993 kb on - strand, within GFF1911at 591.993 kb on - strand, within GFF1911at 591.993 kb on - strand, within GFF1911at 592.192 kb on + strandat 592.192 kb on + strandat 592.192 kb on + strandat 592.192 kb on + strandat 592.193 kb on - strandat 592.196 kb on + strandat 592.196 kb on + strandat 592.736 kb on + strand, within GFF1912at 592.736 kb on + strand, within GFF1912at 592.736 kb on + strand, within GFF1912at 592.736 kb on + strand, within GFF1912at 592.736 kb on + strand, within GFF1912at 592.736 kb on + strand, within GFF1912at 592.736 kb on + strand, within GFF1912at 592.737 kb on - strand, within GFF1912at 592.737 kb on - strand, within GFF1912at 592.737 kb on - strand, within GFF1912at 592.737 kb on - strand, within GFF1912at 592.737 kb on - strand, within GFF1912at 592.737 kb on - strand, within GFF1912at 592.737 kb on - strand, within GFF1912at 592.772 kb on + strand, within GFF1912at 592.772 kb on + strand, within GFF1912at 592.773 kb on - strand, within GFF1912at 592.773 kb on - strand, within GFF1912at 592.884 kb on - strand, within GFF1912at 592.884 kb on - strand, within GFF1912at 592.884 kb on - strand, within GFF1912at 593.076 kb on + strandat 593.120 kb on + strandat 593.157 kb on + strandat 593.157 kb on + strandat 593.158 kb on - strandat 593.333 kb on + strand, within GFF1913at 593.333 kb on + strand, within GFF1913at 593.333 kb on + strand, within GFF1913at 593.333 kb on + strand, within GFF1913at 593.333 kb on + strand, within GFF1913at 593.333 kb on + strand, within GFF1913at 593.333 kb on + strand, within GFF1913at 593.333 kb on + strand, within GFF1913at 593.333 kb on + strand, within GFF1913at 593.333 kb on + strand, within GFF1913at 593.334 kb on - strand, within GFF1913at 593.334 kb on - strand, within GFF1913at 593.334 kb on - strand, within GFF1913at 593.334 kb on - strand, within GFF1913at 593.675 kb on + strand, within GFF1913at 593.675 kb on + strand, within GFF1913at 593.676 kb on - strand, within GFF1913at 593.732 kb on + strandat 593.732 kb on + strandat 593.732 kb on + strandat 593.732 kb on + strandat 593.732 kb on + strandat 593.733 kb on - strandat 593.733 kb on - strandat 593.733 kb on - strandat 593.804 kb on - strandat 593.804 kb on - strandat 593.805 kb on + strandat 593.805 kb on + strandat 593.805 kb on + strandat 593.805 kb on + strandat 593.805 kb on + strandat 593.805 kb on + strandat 593.805 kb on + strandat 593.805 kb on + strandat 593.805 kb on + strandat 593.805 kb on + strandat 593.805 kb on + strandat 593.806 kb on - strandat 593.806 kb on - strandat 593.806 kb on - strandat 593.806 kb on - strandat 593.806 kb on - strandat 593.806 kb on - strandat 593.806 kb on - strandat 593.806 kb on - strandat 593.814 kb on + strandat 593.814 kb on + strandat 593.814 kb on + strandat 593.815 kb on - strandat 593.815 kb on - strandat 593.815 kb on - strandat 593.815 kb on - strandat 593.850 kb on + strandat 593.850 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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591,208 + +0.7
591,208 + +0.2
591,209 - -0.8
591,209 - +0.4
591,209 - +0.3
591,209 - +0.8
591,209 - +0.4
591,209 - +0.4
591,304 + GFF1911 0.18 -0.4
591,304 + GFF1911 0.18 +3.2
591,304 + GFF1911 0.18 +0.6
591,304 + GFF1911 0.18 -1.3
591,304 + GFF1911 0.18 -0.5
591,304 + GFF1911 0.18 +0.8
591,304 + GFF1911 0.18 -0.2
591,304 + GFF1911 0.18 +1.0
591,304 + GFF1911 0.18 +0.1
591,305 - GFF1911 0.18 -0.1
591,305 - GFF1911 0.18 +0.3
591,305 - GFF1911 0.18 +0.1
591,305 - GFF1911 0.18 -0.2
591,305 - GFF1911 0.18 +0.4
591,305 - GFF1911 0.18 +0.4
591,305 - GFF1911 0.18 +2.8
591,401 - GFF1911 0.27 -0.8
591,401 - GFF1911 0.27 +0.3
591,466 + GFF1911 0.33 -1.8
591,505 + GFF1911 0.37 -0.8
591,506 - GFF1911 0.37 -0.3
591,508 + GFF1911 0.37 -1.0
591,508 + GFF1911 0.37 -0.2
591,508 + GFF1911 0.37 +0.4
591,509 - GFF1911 0.37 +2.3
591,509 - GFF1911 0.37 -0.3
591,509 - GFF1911 0.37 +0.3
591,572 - GFF1911 0.43 +1.8
591,572 - GFF1911 0.43 +0.0
591,814 + GFF1911 0.65 -0.9
591,815 - GFF1911 0.65 +0.9
591,883 + GFF1911 0.71 +0.6
591,883 + GFF1911 0.71 +1.3
591,884 - GFF1911 0.72 +0.1
591,886 + GFF1911 0.72 +0.1
591,886 + GFF1911 0.72 -0.1
591,886 + GFF1911 0.72 -1.3
591,886 + GFF1911 0.72 -0.3
591,886 + GFF1911 0.72 -0.2
591,886 + GFF1911 0.72 -0.0
591,886 + GFF1911 0.72 -0.6
591,886 + GFF1911 0.72 +0.3
591,886 + GFF1911 0.72 +0.0
591,887 - GFF1911 0.72 -0.3
591,887 - GFF1911 0.72 -1.1
591,887 - GFF1911 0.72 -0.0
591,992 + GFF1911 0.81 +0.2
591,992 + GFF1911 0.81 +1.4
591,993 - GFF1911 0.82 -1.2
591,993 - GFF1911 0.82 +0.2
591,993 - GFF1911 0.82 +0.3
592,192 + +0.1
592,192 + -1.3
592,192 + -1.3
592,192 + -1.5
592,193 - +0.5
592,196 + +1.3
592,196 + +1.0
592,736 + GFF1912 0.61 -0.2
592,736 + GFF1912 0.61 -0.6
592,736 + GFF1912 0.61 +0.5
592,736 + GFF1912 0.61 +0.3
592,736 + GFF1912 0.61 +0.1
592,736 + GFF1912 0.61 -1.9
592,736 + GFF1912 0.61 +0.4
592,737 - GFF1912 0.61 +0.4
592,737 - GFF1912 0.61 +1.8
592,737 - GFF1912 0.61 +2.0
592,737 - GFF1912 0.61 +0.1
592,737 - GFF1912 0.61 -1.2
592,737 - GFF1912 0.61 -1.0
592,737 - GFF1912 0.61 +0.3
592,772 + GFF1912 0.65 +0.1
592,772 + GFF1912 0.65 -2.0
592,773 - GFF1912 0.66 +0.1
592,773 - GFF1912 0.66 -0.6
592,884 - GFF1912 0.78 +0.1
592,884 - GFF1912 0.78 -0.6
592,884 - GFF1912 0.78 +0.3
593,076 + -0.3
593,120 + -0.3
593,157 + -0.6
593,157 + -1.9
593,158 - -1.2
593,333 + GFF1913 0.25 -0.0
593,333 + GFF1913 0.25 -0.4
593,333 + GFF1913 0.25 +0.0
593,333 + GFF1913 0.25 +0.2
593,333 + GFF1913 0.25 +0.4
593,333 + GFF1913 0.25 -2.4
593,333 + GFF1913 0.25 +0.1
593,333 + GFF1913 0.25 -0.8
593,333 + GFF1913 0.25 +0.6
593,333 + GFF1913 0.25 -0.5
593,334 - GFF1913 0.25 -1.1
593,334 - GFF1913 0.25 -1.0
593,334 - GFF1913 0.25 +0.4
593,334 - GFF1913 0.25 +0.3
593,675 + GFF1913 0.81 +1.4
593,675 + GFF1913 0.81 -0.5
593,676 - GFF1913 0.81 -0.5
593,732 + -0.1
593,732 + -0.4
593,732 + +0.3
593,732 + -2.2
593,732 + +0.1
593,733 - -1.1
593,733 - -0.9
593,733 - -2.1
593,804 - +0.1
593,804 - +0.2
593,805 + -0.5
593,805 + -0.4
593,805 + -0.6
593,805 + -1.6
593,805 + -0.1
593,805 + +0.8
593,805 + +0.3
593,805 + -0.7
593,805 + -0.2
593,805 + +0.5
593,805 + -1.0
593,806 - -0.0
593,806 - -0.5
593,806 - +0.1
593,806 - -0.9
593,806 - +0.5
593,806 - +0.1
593,806 - -0.6
593,806 - -0.2
593,814 + -0.5
593,814 + -0.2
593,814 + +0.3
593,815 - -0.5
593,815 - -0.4
593,815 - -0.3
593,815 - -0.2
593,850 + -1.3
593,850 + +0.1

Or see this region's nucleotide sequence