Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1794 and GFF1795 are separated by 28 nucleotides GFF1795 and GFF1796 are separated by 68 nucleotides
GFF1794 - hypothetical protein, at 454,933 to 455,994
GFF1794
GFF1795 - Hydantoin racemase (EC 5.1.99.5), at 456,023 to 456,814
GFF1795
GFF1796 - NADP-dependent malic enzyme (EC 1.1.1.40), at 456,883 to 459,186
GFF1796
Position (kb) 456
457 Strain fitness (log2 ratio) -2
-1
0
1
2 at 455.175 kb on + strand, within GFF1794 at 455.175 kb on + strand, within GFF1794 at 455.175 kb on + strand, within GFF1794 at 455.377 kb on + strand, within GFF1794 at 455.377 kb on + strand, within GFF1794 at 455.378 kb on - strand, within GFF1794 at 455.395 kb on + strand, within GFF1794 at 455.395 kb on + strand, within GFF1794 at 455.419 kb on + strand, within GFF1794 at 455.419 kb on + strand, within GFF1794 at 455.419 kb on + strand, within GFF1794 at 455.419 kb on + strand, within GFF1794 at 455.533 kb on + strand, within GFF1794 at 455.534 kb on - strand, within GFF1794 at 455.593 kb on + strand, within GFF1794 at 455.594 kb on - strand, within GFF1794 at 455.594 kb on - strand, within GFF1794 at 455.668 kb on + strand, within GFF1794 at 455.669 kb on - strand, within GFF1794 at 455.755 kb on + strand, within GFF1794 at 455.755 kb on + strand, within GFF1794 at 455.755 kb on + strand, within GFF1794 at 455.755 kb on + strand, within GFF1794 at 455.755 kb on + strand, within GFF1794 at 455.755 kb on + strand, within GFF1794 at 455.755 kb on + strand, within GFF1794 at 455.755 kb on + strand, within GFF1794 at 455.756 kb on - strand, within GFF1794 at 455.756 kb on - strand, within GFF1794 at 455.935 kb on + strand at 456.068 kb on + strand at 456.068 kb on + strand at 456.068 kb on + strand at 456.068 kb on + strand at 456.068 kb on + strand at 456.068 kb on + strand at 456.068 kb on + strand at 456.069 kb on - strand at 456.069 kb on - strand at 456.069 kb on - strand at 456.069 kb on - strand at 456.069 kb on - strand at 456.069 kb on - strand at 456.069 kb on - strand at 456.170 kb on + strand, within GFF1795 at 456.179 kb on + strand, within GFF1795 at 456.179 kb on + strand, within GFF1795 at 456.179 kb on + strand, within GFF1795 at 456.179 kb on + strand, within GFF1795 at 456.266 kb on + strand, within GFF1795 at 456.266 kb on + strand, within GFF1795 at 456.267 kb on - strand, within GFF1795 at 456.267 kb on - strand, within GFF1795 at 456.267 kb on - strand, within GFF1795 at 456.600 kb on - strand, within GFF1795 at 456.600 kb on - strand, within GFF1795 at 456.682 kb on + strand, within GFF1795 at 456.683 kb on - strand, within GFF1795 at 456.884 kb on + strand at 456.884 kb on + strand at 456.884 kb on + strand at 456.884 kb on + strand at 456.885 kb on - strand at 456.885 kb on - strand at 456.885 kb on - strand at 456.885 kb on - strand at 457.043 kb on + strand at 457.043 kb on + strand at 457.043 kb on + strand at 457.043 kb on + strand at 457.043 kb on + strand at 457.043 kb on + strand at 457.044 kb on - strand at 457.044 kb on - strand at 457.044 kb on - strand at 457.044 kb on - strand at 457.044 kb on - strand at 457.253 kb on + strand, within GFF1796 at 457.253 kb on + strand, within GFF1796 at 457.253 kb on + strand, within GFF1796 at 457.253 kb on + strand, within GFF1796 at 457.254 kb on - strand, within GFF1796 at 457.254 kb on - strand, within GFF1796 at 457.634 kb on + strand, within GFF1796 at 457.634 kb on + strand, within GFF1796 at 457.634 kb on + strand, within GFF1796 at 457.634 kb on + strand, within GFF1796 at 457.635 kb on - strand, within GFF1796 at 457.635 kb on - strand, within GFF1796 at 457.635 kb on - strand, within GFF1796
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 455,175 + GFF1794 0.23 -0.2 455,175 + GFF1794 0.23 -0.5 455,175 + GFF1794 0.23 +0.7 455,377 + GFF1794 0.42 +0.0 455,377 + GFF1794 0.42 -0.6 455,378 - GFF1794 0.42 +0.6 455,395 + GFF1794 0.44 +1.5 455,395 + GFF1794 0.44 -0.2 455,419 + GFF1794 0.46 -0.2 455,419 + GFF1794 0.46 -0.8 455,419 + GFF1794 0.46 -0.2 455,419 + GFF1794 0.46 -0.2 455,533 + GFF1794 0.56 -0.7 455,534 - GFF1794 0.57 +0.3 455,593 + GFF1794 0.62 +0.2 455,594 - GFF1794 0.62 +1.8 455,594 - GFF1794 0.62 +0.1 455,668 + GFF1794 0.69 -0.5 455,669 - GFF1794 0.69 +0.4 455,755 + GFF1794 0.77 +1.1 455,755 + GFF1794 0.77 -0.3 455,755 + GFF1794 0.77 +0.4 455,755 + GFF1794 0.77 -0.9 455,755 + GFF1794 0.77 +0.0 455,755 + GFF1794 0.77 +0.4 455,755 + GFF1794 0.77 +0.1 455,755 + GFF1794 0.77 -0.1 455,756 - GFF1794 0.77 -1.9 455,756 - GFF1794 0.77 +0.9 455,935 + -0.5 456,068 + +0.4 456,068 + -0.1 456,068 + -0.2 456,068 + -0.4 456,068 + -0.2 456,068 + -0.6 456,068 + +0.1 456,069 - -1.2 456,069 - -0.2 456,069 - +0.6 456,069 - +1.3 456,069 - +1.8 456,069 - -0.2 456,069 - -1.3 456,170 + GFF1795 0.19 +0.3 456,179 + GFF1795 0.20 +0.4 456,179 + GFF1795 0.20 +0.9 456,179 + GFF1795 0.20 -0.8 456,179 + GFF1795 0.20 -0.5 456,266 + GFF1795 0.31 -0.1 456,266 + GFF1795 0.31 -0.2 456,267 - GFF1795 0.31 +0.6 456,267 - GFF1795 0.31 -0.6 456,267 - GFF1795 0.31 -0.5 456,600 - GFF1795 0.73 +0.5 456,600 - GFF1795 0.73 +0.3 456,682 + GFF1795 0.83 +0.9 456,683 - GFF1795 0.83 -0.7 456,884 + -0.6 456,884 + +0.8 456,884 + +0.3 456,884 + +0.3 456,885 - -0.2 456,885 - -0.5 456,885 - -0.9 456,885 - +0.9 457,043 + +0.5 457,043 + -0.6 457,043 + -0.2 457,043 + +0.0 457,043 + +1.0 457,043 + -0.2 457,044 - -1.0 457,044 - +0.7 457,044 - -0.5 457,044 - +0.6 457,044 - +0.8 457,253 + GFF1796 0.16 +0.4 457,253 + GFF1796 0.16 +0.3 457,253 + GFF1796 0.16 +0.8 457,253 + GFF1796 0.16 -0.7 457,254 - GFF1796 0.16 +1.8 457,254 - GFF1796 0.16 +0.3 457,634 + GFF1796 0.33 -0.2 457,634 + GFF1796 0.33 -0.2 457,634 + GFF1796 0.33 -0.7 457,634 + GFF1796 0.33 -1.1 457,635 - GFF1796 0.33 -0.5 457,635 - GFF1796 0.33 +1.1 457,635 - GFF1796 0.33 -0.2
Or see this region's nucleotide sequence