Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1287 and GFF1288 are separated by 0 nucleotides GFF1288 and GFF1289 are separated by 1 nucleotides GFF1289 and GFF1290 are separated by 19 nucleotides
GFF1287 - Sulfate and thiosulfate binding protein CysP, at 614,293 to 615,309
GFF1287
GFF1288 - Sulfate transport system permease protein CysT, at 615,310 to 616,197
GFF1288
GFF1289 - Sulfate transport system permease protein CysW, at 616,199 to 617,101
GFF1289
GFF1290 - Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25), at 617,121 to 618,218
GFF1290
Position (kb) 616
617
618 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 615.289 kb on + strand at 615.289 kb on + strand at 615.289 kb on + strand at 615.289 kb on + strand at 615.290 kb on - strand at 615.290 kb on - strand at 615.290 kb on - strand at 615.290 kb on - strand at 615.290 kb on - strand at 615.291 kb on + strand at 615.291 kb on + strand at 615.307 kb on + strand at 615.307 kb on + strand at 615.433 kb on + strand, within GFF1288 at 615.545 kb on - strand, within GFF1288 at 615.628 kb on + strand, within GFF1288 at 615.628 kb on + strand, within GFF1288 at 615.629 kb on - strand, within GFF1288 at 615.629 kb on - strand, within GFF1288 at 616.000 kb on + strand, within GFF1288 at 616.084 kb on + strand, within GFF1288 at 616.084 kb on + strand, within GFF1288 at 616.085 kb on - strand, within GFF1288 at 616.090 kb on + strand, within GFF1288 at 616.090 kb on + strand, within GFF1288 at 616.091 kb on - strand, within GFF1288 at 616.365 kb on - strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.568 kb on + strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.569 kb on - strand, within GFF1289 at 616.821 kb on - strand, within GFF1289 at 616.821 kb on - strand, within GFF1289 at 616.935 kb on - strand, within GFF1289 at 616.935 kb on - strand, within GFF1289 at 616.943 kb on + strand, within GFF1289 at 616.944 kb on - strand, within GFF1289 at 616.944 kb on - strand, within GFF1289 at 616.944 kb on - strand, within GFF1289 at 617.367 kb on + strand, within GFF1290 at 617.368 kb on - strand, within GFF1290 at 617.821 kb on - strand, within GFF1290 at 617.943 kb on + strand, within GFF1290 at 617.943 kb on + strand, within GFF1290 at 617.976 kb on + strand, within GFF1290 at 617.976 kb on + strand, within GFF1290 at 617.976 kb on + strand, within GFF1290 at 617.977 kb on - strand, within GFF1290 at 617.977 kb on - strand, within GFF1290 at 617.977 kb on - strand, within GFF1290
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 615,289 + -0.2 615,289 + -0.8 615,289 + -0.3 615,289 + -0.1 615,290 - -0.5 615,290 - -0.2 615,290 - -0.8 615,290 - -0.7 615,290 - -0.1 615,291 + -0.5 615,291 + -0.1 615,307 + +0.5 615,307 + +0.8 615,433 + GFF1288 0.14 -0.0 615,545 - GFF1288 0.26 -0.7 615,628 + GFF1288 0.36 -0.0 615,628 + GFF1288 0.36 +1.5 615,629 - GFF1288 0.36 -0.8 615,629 - GFF1288 0.36 +0.7 616,000 + GFF1288 0.78 -1.1 616,084 + GFF1288 0.87 +0.0 616,084 + GFF1288 0.87 -0.4 616,085 - GFF1288 0.87 -0.0 616,090 + GFF1288 0.88 +0.1 616,090 + GFF1288 0.88 +0.9 616,091 - GFF1288 0.88 +0.2 616,365 - GFF1289 0.18 +1.5 616,568 + GFF1289 0.41 -0.7 616,568 + GFF1289 0.41 +1.2 616,568 + GFF1289 0.41 +0.2 616,568 + GFF1289 0.41 +0.3 616,568 + GFF1289 0.41 +0.1 616,568 + GFF1289 0.41 -1.9 616,568 + GFF1289 0.41 +0.5 616,568 + GFF1289 0.41 -0.4 616,569 - GFF1289 0.41 +0.0 616,569 - GFF1289 0.41 +0.8 616,569 - GFF1289 0.41 +0.7 616,569 - GFF1289 0.41 +0.2 616,569 - GFF1289 0.41 +1.8 616,569 - GFF1289 0.41 -0.7 616,569 - GFF1289 0.41 +0.1 616,569 - GFF1289 0.41 -0.0 616,569 - GFF1289 0.41 -0.4 616,569 - GFF1289 0.41 +0.5 616,569 - GFF1289 0.41 +0.3 616,569 - GFF1289 0.41 -0.4 616,569 - GFF1289 0.41 +1.2 616,569 - GFF1289 0.41 +1.5 616,569 - GFF1289 0.41 +1.5 616,569 - GFF1289 0.41 -0.0 616,821 - GFF1289 0.69 +0.5 616,821 - GFF1289 0.69 +2.1 616,935 - GFF1289 0.82 +0.4 616,935 - GFF1289 0.82 +0.1 616,943 + GFF1289 0.82 +0.0 616,944 - GFF1289 0.83 -0.2 616,944 - GFF1289 0.83 +0.0 616,944 - GFF1289 0.83 +2.8 617,367 + GFF1290 0.22 -0.2 617,368 - GFF1290 0.22 +0.8 617,821 - GFF1290 0.64 -0.3 617,943 + GFF1290 0.75 -0.5 617,943 + GFF1290 0.75 +1.5 617,976 + GFF1290 0.78 -0.2 617,976 + GFF1290 0.78 +0.2 617,976 + GFF1290 0.78 -1.0 617,977 - GFF1290 0.78 -0.6 617,977 - GFF1290 0.78 +0.5 617,977 - GFF1290 0.78 -0.3
Or see this region's nucleotide sequence