Strain Fitness in Variovorax sp. SCN45 around GFF1279

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1277 and GFF1278 are separated by 52 nucleotidesGFF1278 and GFF1279 overlap by 4 nucleotidesGFF1279 and GFF1280 are separated by 13 nucleotidesGFF1280 and GFF1281 overlap by 10 nucleotides GFF1277 - Alkanesulfonates-binding protein, at 607,159 to 608,130 GFF1277 GFF1278 - no description, at 608,183 to 608,305 GFF1278 GFF1279 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 608,302 to 609,135 GFF1279 GFF1280 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 609,149 to 609,856 GFF1280 GFF1281 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 609,847 to 610,578 GFF1281 Position (kb) 608 609 610Strain fitness (log2 ratio) -2 -1 0 1 2 3at 607.469 kb on + strand, within GFF1277at 607.469 kb on + strand, within GFF1277at 607.470 kb on - strand, within GFF1277at 607.470 kb on - strand, within GFF1277at 607.587 kb on - strand, within GFF1277at 607.587 kb on - strand, within GFF1277at 607.619 kb on + strand, within GFF1277at 607.619 kb on + strand, within GFF1277at 607.619 kb on + strand, within GFF1277at 607.620 kb on - strand, within GFF1277at 607.620 kb on - strand, within GFF1277at 607.620 kb on - strand, within GFF1277at 607.679 kb on + strand, within GFF1277at 607.680 kb on - strand, within GFF1277at 607.680 kb on - strand, within GFF1277at 607.680 kb on - strand, within GFF1277at 607.680 kb on - strand, within GFF1277at 607.680 kb on - strand, within GFF1277at 607.680 kb on - strand, within GFF1277at 607.680 kb on - strand, within GFF1277at 607.692 kb on - strand, within GFF1277at 607.692 kb on - strand, within GFF1277at 607.805 kb on + strand, within GFF1277at 607.806 kb on - strand, within GFF1277at 607.806 kb on - strand, within GFF1277at 608.061 kb on + strandat 608.155 kb on + strandat 608.155 kb on + strandat 608.155 kb on + strandat 608.155 kb on + strandat 608.156 kb on - strandat 608.156 kb on - strandat 608.156 kb on - strandat 608.221 kb on + strand, within GFF1278at 608.221 kb on + strand, within GFF1278at 608.221 kb on + strand, within GFF1278at 608.221 kb on + strand, within GFF1278at 608.221 kb on + strand, within GFF1278at 608.221 kb on + strand, within GFF1278at 608.222 kb on - strand, within GFF1278at 608.222 kb on - strand, within GFF1278at 608.222 kb on - strand, within GFF1278at 608.222 kb on - strand, within GFF1278at 608.222 kb on - strand, within GFF1278at 608.266 kb on + strand, within GFF1278at 608.266 kb on + strand, within GFF1278at 608.266 kb on + strand, within GFF1278at 608.284 kb on + strand, within GFF1278at 608.284 kb on + strand, within GFF1278at 608.284 kb on + strand, within GFF1278at 608.285 kb on - strand, within GFF1278at 608.453 kb on - strand, within GFF1279at 608.659 kb on + strand, within GFF1279at 608.660 kb on - strand, within GFF1279at 608.660 kb on - strand, within GFF1279at 608.783 kb on - strand, within GFF1279at 608.783 kb on - strand, within GFF1279at 608.806 kb on + strand, within GFF1279at 608.807 kb on - strand, within GFF1279at 608.807 kb on - strand, within GFF1279at 608.807 kb on - strand, within GFF1279at 608.942 kb on + strand, within GFF1279at 608.953 kb on + strand, within GFF1279at 608.953 kb on + strand, within GFF1279at 608.953 kb on + strand, within GFF1279at 608.954 kb on - strand, within GFF1279at 609.052 kb on + strandat 609.052 kb on + strandat 609.052 kb on + strandat 609.053 kb on - strandat 609.053 kb on - strandat 609.053 kb on - strandat 609.053 kb on - strandat 609.329 kb on + strand, within GFF1280at 609.329 kb on + strand, within GFF1280at 609.329 kb on + strand, within GFF1280at 609.329 kb on + strand, within GFF1280at 609.329 kb on + strand, within GFF1280at 609.329 kb on + strand, within GFF1280at 609.330 kb on - strand, within GFF1280at 609.330 kb on - strand, within GFF1280at 609.330 kb on - strand, within GFF1280at 609.330 kb on - strand, within GFF1280at 609.330 kb on - strand, within GFF1280at 609.330 kb on - strand, within GFF1280at 609.330 kb on - strand, within GFF1280at 609.380 kb on + strand, within GFF1280at 609.380 kb on + strand, within GFF1280at 609.380 kb on + strand, within GFF1280at 609.428 kb on + strand, within GFF1280at 609.428 kb on + strand, within GFF1280at 609.428 kb on + strand, within GFF1280at 609.428 kb on + strand, within GFF1280at 609.429 kb on - strand, within GFF1280at 609.429 kb on - strand, within GFF1280at 609.429 kb on - strand, within GFF1280at 609.429 kb on - strand, within GFF1280at 609.429 kb on - strand, within GFF1280at 609.485 kb on + strand, within GFF1280at 609.497 kb on + strand, within GFF1280at 609.497 kb on + strand, within GFF1280at 609.497 kb on + strand, within GFF1280at 609.497 kb on + strand, within GFF1280at 609.497 kb on + strand, within GFF1280at 609.497 kb on + strand, within GFF1280at 609.497 kb on + strand, within GFF1280at 609.497 kb on + strand, within GFF1280at 609.498 kb on - strand, within GFF1280at 609.498 kb on - strand, within GFF1280at 609.498 kb on - strand, within GFF1280at 609.498 kb on - strand, within GFF1280at 609.498 kb on - strand, within GFF1280at 609.650 kb on + strand, within GFF1280at 609.650 kb on + strand, within GFF1280at 609.650 kb on + strand, within GFF1280at 609.650 kb on + strand, within GFF1280at 609.650 kb on + strand, within GFF1280at 609.650 kb on + strand, within GFF1280at 609.650 kb on + strand, within GFF1280at 609.650 kb on + strand, within GFF1280at 609.651 kb on - strand, within GFF1280at 609.651 kb on - strand, within GFF1280at 609.651 kb on - strand, within GFF1280at 609.651 kb on - strand, within GFF1280at 609.651 kb on - strand, within GFF1280at 609.651 kb on - strand, within GFF1280at 609.651 kb on - strand, within GFF1280at 609.710 kb on + strand, within GFF1280at 609.711 kb on - strand, within GFF1280at 609.779 kb on + strand, within GFF1280at 609.779 kb on + strand, within GFF1280at 609.779 kb on + strand, within GFF1280at 609.780 kb on - strand, within GFF1280at 609.780 kb on - strand, within GFF1280at 609.780 kb on - strand, within GFF1280at 609.780 kb on - strand, within GFF1280at 609.884 kb on - strandat 609.884 kb on - strandat 610.093 kb on + strand, within GFF1281at 610.093 kb on + strand, within GFF1281at 610.093 kb on + strand, within GFF1281at 610.093 kb on + strand, within GFF1281at 610.093 kb on + strand, within GFF1281at 610.093 kb on + strand, within GFF1281at 610.094 kb on - strand, within GFF1281at 610.094 kb on - strand, within GFF1281at 610.094 kb on - strand, within GFF1281

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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607,469 + GFF1277 0.32 +0.5
607,469 + GFF1277 0.32 +0.6
607,470 - GFF1277 0.32 -0.5
607,470 - GFF1277 0.32 +0.1
607,587 - GFF1277 0.44 +0.3
607,587 - GFF1277 0.44 +0.2
607,619 + GFF1277 0.47 +0.5
607,619 + GFF1277 0.47 -1.3
607,619 + GFF1277 0.47 -1.5
607,620 - GFF1277 0.47 -1.0
607,620 - GFF1277 0.47 -0.0
607,620 - GFF1277 0.47 +0.6
607,679 + GFF1277 0.53 +0.1
607,680 - GFF1277 0.54 +1.2
607,680 - GFF1277 0.54 -0.2
607,680 - GFF1277 0.54 -1.0
607,680 - GFF1277 0.54 -0.2
607,680 - GFF1277 0.54 +0.5
607,680 - GFF1277 0.54 -0.2
607,680 - GFF1277 0.54 +0.5
607,692 - GFF1277 0.55 -0.3
607,692 - GFF1277 0.55 -0.3
607,805 + GFF1277 0.66 +0.4
607,806 - GFF1277 0.67 -1.5
607,806 - GFF1277 0.67 +0.1
608,061 + -0.0
608,155 + +0.0
608,155 + +0.6
608,155 + -0.2
608,155 + -0.3
608,156 - +0.5
608,156 - +0.2
608,156 - -1.8
608,221 + GFF1278 0.31 +1.8
608,221 + GFF1278 0.31 -0.4
608,221 + GFF1278 0.31 +0.2
608,221 + GFF1278 0.31 -0.5
608,221 + GFF1278 0.31 -0.5
608,221 + GFF1278 0.31 -1.0
608,222 - GFF1278 0.32 -1.5
608,222 - GFF1278 0.32 -0.8
608,222 - GFF1278 0.32 -1.0
608,222 - GFF1278 0.32 +0.1
608,222 - GFF1278 0.32 +0.3
608,266 + GFF1278 0.67 +0.3
608,266 + GFF1278 0.67 -0.2
608,266 + GFF1278 0.67 +0.1
608,284 + GFF1278 0.82 -1.1
608,284 + GFF1278 0.82 +1.9
608,284 + GFF1278 0.82 -0.4
608,285 - GFF1278 0.83 -0.2
608,453 - GFF1279 0.18 +0.7
608,659 + GFF1279 0.43 +0.7
608,660 - GFF1279 0.43 -0.2
608,660 - GFF1279 0.43 -0.4
608,783 - GFF1279 0.58 +0.0
608,783 - GFF1279 0.58 -2.5
608,806 + GFF1279 0.60 +1.1
608,807 - GFF1279 0.61 +1.2
608,807 - GFF1279 0.61 -1.8
608,807 - GFF1279 0.61 -0.0
608,942 + GFF1279 0.77 +0.3
608,953 + GFF1279 0.78 +1.5
608,953 + GFF1279 0.78 -1.2
608,953 + GFF1279 0.78 +0.5
608,954 - GFF1279 0.78 -0.0
609,052 + +0.2
609,052 + -1.4
609,052 + +0.5
609,053 - -0.1
609,053 - +0.2
609,053 - -0.6
609,053 - -0.8
609,329 + GFF1280 0.25 -0.1
609,329 + GFF1280 0.25 -1.0
609,329 + GFF1280 0.25 -1.1
609,329 + GFF1280 0.25 +0.2
609,329 + GFF1280 0.25 +0.2
609,329 + GFF1280 0.25 -1.5
609,330 - GFF1280 0.26 -0.7
609,330 - GFF1280 0.26 +0.6
609,330 - GFF1280 0.26 +0.0
609,330 - GFF1280 0.26 -0.2
609,330 - GFF1280 0.26 +1.8
609,330 - GFF1280 0.26 +0.2
609,330 - GFF1280 0.26 -1.0
609,380 + GFF1280 0.33 +0.9
609,380 + GFF1280 0.33 -0.3
609,380 + GFF1280 0.33 +0.8
609,428 + GFF1280 0.39 -0.7
609,428 + GFF1280 0.39 +0.5
609,428 + GFF1280 0.39 +0.0
609,428 + GFF1280 0.39 +1.3
609,429 - GFF1280 0.40 -1.3
609,429 - GFF1280 0.40 -0.4
609,429 - GFF1280 0.40 -1.0
609,429 - GFF1280 0.40 -0.6
609,429 - GFF1280 0.40 -0.9
609,485 + GFF1280 0.47 -0.6
609,497 + GFF1280 0.49 -0.5
609,497 + GFF1280 0.49 -1.2
609,497 + GFF1280 0.49 +0.2
609,497 + GFF1280 0.49 -2.2
609,497 + GFF1280 0.49 -0.2
609,497 + GFF1280 0.49 -0.3
609,497 + GFF1280 0.49 -1.0
609,497 + GFF1280 0.49 -0.2
609,498 - GFF1280 0.49 -1.0
609,498 - GFF1280 0.49 -0.1
609,498 - GFF1280 0.49 -2.7
609,498 - GFF1280 0.49 -0.4
609,498 - GFF1280 0.49 -0.5
609,650 + GFF1280 0.71 -0.7
609,650 + GFF1280 0.71 +0.5
609,650 + GFF1280 0.71 -1.1
609,650 + GFF1280 0.71 -0.6
609,650 + GFF1280 0.71 +0.1
609,650 + GFF1280 0.71 -0.4
609,650 + GFF1280 0.71 +1.1
609,650 + GFF1280 0.71 -0.4
609,651 - GFF1280 0.71 +0.8
609,651 - GFF1280 0.71 -0.5
609,651 - GFF1280 0.71 -0.3
609,651 - GFF1280 0.71 -0.5
609,651 - GFF1280 0.71 -0.1
609,651 - GFF1280 0.71 -1.0
609,651 - GFF1280 0.71 +0.3
609,710 + GFF1280 0.79 +0.2
609,711 - GFF1280 0.79 +0.5
609,779 + GFF1280 0.89 +0.0
609,779 + GFF1280 0.89 -0.9
609,779 + GFF1280 0.89 +0.9
609,780 - GFF1280 0.89 +0.2
609,780 - GFF1280 0.89 +0.8
609,780 - GFF1280 0.89 -0.2
609,780 - GFF1280 0.89 -0.7
609,884 - -1.3
609,884 - -1.8
610,093 + GFF1281 0.34 -0.1
610,093 + GFF1281 0.34 +0.4
610,093 + GFF1281 0.34 -0.7
610,093 + GFF1281 0.34 +0.5
610,093 + GFF1281 0.34 -1.3
610,093 + GFF1281 0.34 +0.3
610,094 - GFF1281 0.34 -0.7
610,094 - GFF1281 0.34 -0.5
610,094 - GFF1281 0.34 +3.5

Or see this region's nucleotide sequence