Strain Fitness in Variovorax sp. SCN45 around GFF1080

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1078 and GFF1079 are separated by 95 nucleotidesGFF1079 and GFF1080 are separated by 183 nucleotidesGFF1080 and GFF1081 are separated by 335 nucleotides GFF1078 - hypothetical protein, at 389,261 to 389,995 GFF1078 GFF1079 - no description, at 390,091 to 390,342 GFF1079 GFF1080 - no description, at 390,526 to 390,789 GFF1080 GFF1081 - hypothetical protein, at 391,125 to 392,807 GFF1081 Position (kb) 390 391Strain fitness (log2 ratio) -2 -1 0 1at 389.556 kb on + strand, within GFF1078at 389.556 kb on + strand, within GFF1078at 389.556 kb on + strand, within GFF1078at 389.557 kb on - strand, within GFF1078at 389.557 kb on - strand, within GFF1078at 389.649 kb on + strand, within GFF1078at 389.650 kb on - strand, within GFF1078at 389.650 kb on - strand, within GFF1078at 389.650 kb on - strand, within GFF1078at 389.678 kb on + strand, within GFF1078at 389.678 kb on + strand, within GFF1078at 389.678 kb on + strand, within GFF1078at 389.678 kb on + strand, within GFF1078at 389.678 kb on + strand, within GFF1078at 389.679 kb on - strand, within GFF1078at 389.679 kb on - strand, within GFF1078at 389.685 kb on + strand, within GFF1078at 389.717 kb on + strand, within GFF1078at 389.717 kb on + strand, within GFF1078at 389.717 kb on + strand, within GFF1078at 389.718 kb on - strand, within GFF1078at 389.724 kb on + strand, within GFF1078at 389.724 kb on + strand, within GFF1078at 389.724 kb on + strand, within GFF1078at 389.724 kb on + strand, within GFF1078at 389.724 kb on + strand, within GFF1078at 389.725 kb on - strand, within GFF1078at 389.725 kb on - strand, within GFF1078at 389.725 kb on - strand, within GFF1078at 389.823 kb on + strand, within GFF1078at 389.823 kb on + strand, within GFF1078at 389.883 kb on + strand, within GFF1078at 389.883 kb on + strand, within GFF1078at 389.883 kb on + strand, within GFF1078at 389.883 kb on + strand, within GFF1078at 389.883 kb on + strand, within GFF1078at 389.884 kb on - strand, within GFF1078at 389.894 kb on + strand, within GFF1078at 389.895 kb on - strand, within GFF1078at 389.895 kb on - strand, within GFF1078at 389.895 kb on - strand, within GFF1078at 389.921 kb on + strand, within GFF1078at 389.922 kb on - strandat 389.947 kb on + strandat 389.947 kb on + strandat 389.947 kb on + strandat 389.947 kb on + strandat 389.947 kb on + strandat 389.948 kb on - strandat 389.948 kb on - strandat 389.948 kb on - strandat 389.948 kb on - strandat 389.948 kb on - strandat 389.948 kb on - strandat 389.948 kb on - strandat 390.022 kb on + strandat 390.036 kb on - strandat 390.116 kb on + strandat 390.117 kb on - strand, within GFF1079at 390.212 kb on + strand, within GFF1079at 390.212 kb on + strand, within GFF1079at 390.212 kb on + strand, within GFF1079at 390.213 kb on - strand, within GFF1079at 390.245 kb on + strand, within GFF1079at 390.245 kb on + strand, within GFF1079at 390.245 kb on + strand, within GFF1079at 390.245 kb on + strand, within GFF1079at 390.246 kb on - strand, within GFF1079at 390.246 kb on - strand, within GFF1079at 390.331 kb on - strandat 390.531 kb on + strandat 390.531 kb on + strandat 390.531 kb on + strandat 390.531 kb on + strandat 390.572 kb on + strand, within GFF1080at 390.573 kb on - strand, within GFF1080at 390.573 kb on - strand, within GFF1080at 390.573 kb on - strand, within GFF1080at 390.573 kb on - strand, within GFF1080at 390.606 kb on + strand, within GFF1080at 390.606 kb on + strand, within GFF1080at 390.607 kb on - strand, within GFF1080at 390.615 kb on + strand, within GFF1080at 390.615 kb on + strand, within GFF1080at 390.806 kb on + strandat 390.806 kb on + strandat 390.820 kb on - strandat 390.820 kb on - strandat 390.834 kb on - strandat 390.918 kb on + strandat 390.918 kb on + strandat 390.919 kb on - strandat 391.037 kb on - strandat 391.039 kb on + strandat 391.040 kb on - strandat 391.102 kb on - strandat 391.102 kb on - strandat 391.119 kb on + strandat 391.363 kb on - strand, within GFF1081at 391.363 kb on - strand, within GFF1081at 391.363 kb on - strand, within GFF1081at 391.363 kb on - strand, within GFF1081at 391.363 kb on - strand, within GFF1081at 391.389 kb on + strand, within GFF1081at 391.392 kb on + strand, within GFF1081at 391.392 kb on + strand, within GFF1081at 391.393 kb on - strand, within GFF1081at 391.393 kb on - strand, within GFF1081at 391.607 kb on + strand, within GFF1081at 391.713 kb on - strand, within GFF1081at 391.713 kb on - strand, within GFF1081at 391.713 kb on - strand, within GFF1081at 391.731 kb on + strand, within GFF1081at 391.731 kb on + strand, within GFF1081at 391.732 kb on - strand, within GFF1081at 391.732 kb on - strand, within GFF1081at 391.732 kb on - strand, within GFF1081

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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389,556 + GFF1078 0.40 -0.9
389,556 + GFF1078 0.40 -0.2
389,556 + GFF1078 0.40 +0.2
389,557 - GFF1078 0.40 -1.2
389,557 - GFF1078 0.40 +1.6
389,649 + GFF1078 0.53 +0.2
389,650 - GFF1078 0.53 +0.2
389,650 - GFF1078 0.53 -0.9
389,650 - GFF1078 0.53 -0.3
389,678 + GFF1078 0.57 -0.1
389,678 + GFF1078 0.57 -0.5
389,678 + GFF1078 0.57 -0.3
389,678 + GFF1078 0.57 -0.4
389,678 + GFF1078 0.57 -2.7
389,679 - GFF1078 0.57 +0.2
389,679 - GFF1078 0.57 +1.6
389,685 + GFF1078 0.58 -0.2
389,717 + GFF1078 0.62 -0.3
389,717 + GFF1078 0.62 -0.3
389,717 + GFF1078 0.62 -0.4
389,718 - GFF1078 0.62 +0.9
389,724 + GFF1078 0.63 +0.2
389,724 + GFF1078 0.63 +0.2
389,724 + GFF1078 0.63 +0.2
389,724 + GFF1078 0.63 -0.1
389,724 + GFF1078 0.63 -2.4
389,725 - GFF1078 0.63 +0.5
389,725 - GFF1078 0.63 -0.0
389,725 - GFF1078 0.63 -0.1
389,823 + GFF1078 0.76 -1.4
389,823 + GFF1078 0.76 -0.4
389,883 + GFF1078 0.85 -1.4
389,883 + GFF1078 0.85 -0.0
389,883 + GFF1078 0.85 -0.3
389,883 + GFF1078 0.85 +0.7
389,883 + GFF1078 0.85 -0.8
389,884 - GFF1078 0.85 -0.7
389,894 + GFF1078 0.86 -0.8
389,895 - GFF1078 0.86 +0.2
389,895 - GFF1078 0.86 -1.8
389,895 - GFF1078 0.86 +0.4
389,921 + GFF1078 0.90 -0.1
389,922 - -0.0
389,947 + -0.1
389,947 + -1.6
389,947 + -1.9
389,947 + +1.2
389,947 + -0.1
389,948 - -0.3
389,948 - +1.6
389,948 - -1.3
389,948 - -0.0
389,948 - +0.9
389,948 - -0.3
389,948 - -0.5
390,022 + -1.0
390,036 - +1.0
390,116 + +0.3
390,117 - GFF1079 0.10 -0.4
390,212 + GFF1079 0.48 -0.2
390,212 + GFF1079 0.48 -0.2
390,212 + GFF1079 0.48 -0.1
390,213 - GFF1079 0.48 -0.3
390,245 + GFF1079 0.61 -1.0
390,245 + GFF1079 0.61 -0.2
390,245 + GFF1079 0.61 -0.4
390,245 + GFF1079 0.61 +1.3
390,246 - GFF1079 0.62 +0.9
390,246 - GFF1079 0.62 -0.0
390,331 - -0.7
390,531 + +0.3
390,531 + +0.2
390,531 + +0.0
390,531 + -0.0
390,572 + GFF1080 0.17 -0.8
390,573 - GFF1080 0.18 -0.4
390,573 - GFF1080 0.18 -1.4
390,573 - GFF1080 0.18 -0.1
390,573 - GFF1080 0.18 +0.0
390,606 + GFF1080 0.30 +0.3
390,606 + GFF1080 0.30 -0.7
390,607 - GFF1080 0.31 -1.1
390,615 + GFF1080 0.34 -0.2
390,615 + GFF1080 0.34 -1.5
390,806 + -0.1
390,806 + -1.4
390,820 - -2.2
390,820 - +0.0
390,834 - +0.8
390,918 + +0.7
390,918 + -0.5
390,919 - -1.0
391,037 - -0.2
391,039 + +1.2
391,040 - -0.1
391,102 - -0.7
391,102 - +1.1
391,119 + +0.5
391,363 - GFF1081 0.14 -0.2
391,363 - GFF1081 0.14 -0.0
391,363 - GFF1081 0.14 -0.3
391,363 - GFF1081 0.14 -0.5
391,363 - GFF1081 0.14 -1.3
391,389 + GFF1081 0.16 -1.1
391,392 + GFF1081 0.16 -0.7
391,392 + GFF1081 0.16 -0.0
391,393 - GFF1081 0.16 +0.8
391,393 - GFF1081 0.16 -0.4
391,607 + GFF1081 0.29 -1.8
391,713 - GFF1081 0.35 -0.6
391,713 - GFF1081 0.35 -1.3
391,713 - GFF1081 0.35 -2.0
391,731 + GFF1081 0.36 -1.4
391,731 + GFF1081 0.36 -0.6
391,732 - GFF1081 0.36 -0.4
391,732 - GFF1081 0.36 +0.1
391,732 - GFF1081 0.36 +0.6

Or see this region's nucleotide sequence