Strain Fitness in Variovorax sp. SCN45 around GFF922

Experiment: M9 with Supernatant from Cyptococcus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF921 and GFF922 are separated by 22 nucleotidesGFF922 and GFF923 are separated by 177 nucleotidesGFF923 and GFF924 are separated by 100 nucleotides GFF921 - Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19), at 234,042 to 235,331 GFF921 GFF922 - hypothetical protein, at 235,354 to 235,749 GFF922 GFF923 - Chromosome partition protein smc, at 235,927 to 236,310 GFF923 GFF924 - hypothetical protein, at 236,411 to 237,208 GFF924 Position (kb) 235 236Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 234.516 kb on + strand, within GFF921at 234.516 kb on + strand, within GFF921at 234.516 kb on + strand, within GFF921at 234.516 kb on + strand, within GFF921at 234.517 kb on - strand, within GFF921at 234.517 kb on - strand, within GFF921at 234.517 kb on - strand, within GFF921at 234.517 kb on - strand, within GFF921at 234.696 kb on + strand, within GFF921at 234.696 kb on + strand, within GFF921at 234.696 kb on + strand, within GFF921at 234.696 kb on + strand, within GFF921at 234.696 kb on + strand, within GFF921at 234.696 kb on + strand, within GFF921at 234.696 kb on + strand, within GFF921at 234.696 kb on + strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.697 kb on - strand, within GFF921at 234.822 kb on + strand, within GFF921at 234.945 kb on + strand, within GFF921at 234.945 kb on + strand, within GFF921at 234.946 kb on - strand, within GFF921at 235.403 kb on + strand, within GFF922at 235.403 kb on + strand, within GFF922at 235.403 kb on + strand, within GFF922at 235.403 kb on + strand, within GFF922at 235.404 kb on - strand, within GFF922at 235.404 kb on - strand, within GFF922at 235.404 kb on - strand, within GFF922at 235.404 kb on - strand, within GFF922at 235.404 kb on - strand, within GFF922at 235.406 kb on + strand, within GFF922at 235.406 kb on + strand, within GFF922at 235.407 kb on - strand, within GFF922at 235.407 kb on - strand, within GFF922at 235.425 kb on - strand, within GFF922at 235.425 kb on - strand, within GFF922at 235.425 kb on - strand, within GFF922at 235.460 kb on + strand, within GFF922at 235.460 kb on + strand, within GFF922at 235.521 kb on - strand, within GFF922at 235.554 kb on + strand, within GFF922at 235.562 kb on + strand, within GFF922at 235.562 kb on + strand, within GFF922at 235.562 kb on + strand, within GFF922at 235.562 kb on + strand, within GFF922at 235.563 kb on - strand, within GFF922at 235.563 kb on - strand, within GFF922at 235.798 kb on + strandat 235.799 kb on - strandat 235.799 kb on - strandat 235.851 kb on + strandat 235.852 kb on - strandat 235.852 kb on - strandat 235.860 kb on + strandat 235.860 kb on + strandat 235.861 kb on - strandat 235.861 kb on - strandat 235.861 kb on - strandat 235.861 kb on - strandat 235.861 kb on - strandat 236.254 kb on + strand, within GFF923at 236.255 kb on - strand, within GFF923at 236.255 kb on - strand, within GFF923at 236.255 kb on - strand, within GFF923at 236.255 kb on - strand, within GFF923at 236.255 kb on - strand, within GFF923at 236.255 kb on - strand, within GFF923at 236.308 kb on + strandat 236.309 kb on - strandat 236.350 kb on + strandat 236.350 kb on + strandat 236.350 kb on + strandat 236.350 kb on + strandat 236.350 kb on + strandat 236.350 kb on + strandat 236.350 kb on + strandat 236.351 kb on - strandat 236.351 kb on - strandat 236.351 kb on - strandat 236.351 kb on - strandat 236.351 kb on - strandat 236.351 kb on - strandat 236.377 kb on + strandat 236.495 kb on + strand, within GFF924at 236.495 kb on + strand, within GFF924at 236.496 kb on - strand, within GFF924at 236.654 kb on + strand, within GFF924at 236.654 kb on + strand, within GFF924at 236.655 kb on - strand, within GFF924at 236.655 kb on - strand, within GFF924at 236.655 kb on - strand, within GFF924at 236.655 kb on - strand, within GFF924at 236.655 kb on - strand, within GFF924at 236.655 kb on - strand, within GFF924at 236.655 kb on - strand, within GFF924at 236.726 kb on + strand, within GFF924at 236.727 kb on - strand, within GFF924at 236.727 kb on - strand, within GFF924at 236.727 kb on - strand, within GFF924at 236.727 kb on - strand, within GFF924at 236.727 kb on - strand, within GFF924at 236.741 kb on + strand, within GFF924at 236.741 kb on + strand, within GFF924at 236.742 kb on - strand, within GFF924

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus
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234,516 + GFF921 0.37 -0.6
234,516 + GFF921 0.37 +0.7
234,516 + GFF921 0.37 -0.6
234,516 + GFF921 0.37 +0.6
234,517 - GFF921 0.37 -0.8
234,517 - GFF921 0.37 -0.2
234,517 - GFF921 0.37 +0.5
234,517 - GFF921 0.37 +0.0
234,696 + GFF921 0.51 -0.3
234,696 + GFF921 0.51 +0.5
234,696 + GFF921 0.51 -1.6
234,696 + GFF921 0.51 +0.3
234,696 + GFF921 0.51 +0.3
234,696 + GFF921 0.51 +0.6
234,696 + GFF921 0.51 -0.1
234,696 + GFF921 0.51 -1.7
234,697 - GFF921 0.51 -0.7
234,697 - GFF921 0.51 -2.7
234,697 - GFF921 0.51 +0.5
234,697 - GFF921 0.51 +0.0
234,697 - GFF921 0.51 +0.0
234,697 - GFF921 0.51 +0.3
234,697 - GFF921 0.51 +1.0
234,697 - GFF921 0.51 -3.1
234,697 - GFF921 0.51 +0.2
234,697 - GFF921 0.51 -0.7
234,822 + GFF921 0.60 -0.5
234,945 + GFF921 0.70 -0.2
234,945 + GFF921 0.70 +1.6
234,946 - GFF921 0.70 -0.2
235,403 + GFF922 0.12 -1.0
235,403 + GFF922 0.12 -1.2
235,403 + GFF922 0.12 -0.2
235,403 + GFF922 0.12 -0.6
235,404 - GFF922 0.13 +0.4
235,404 - GFF922 0.13 -0.3
235,404 - GFF922 0.13 -0.5
235,404 - GFF922 0.13 -0.3
235,404 - GFF922 0.13 +1.2
235,406 + GFF922 0.13 -0.6
235,406 + GFF922 0.13 -0.3
235,407 - GFF922 0.13 +0.7
235,407 - GFF922 0.13 -2.7
235,425 - GFF922 0.18 +0.8
235,425 - GFF922 0.18 -0.7
235,425 - GFF922 0.18 -0.7
235,460 + GFF922 0.27 -0.1
235,460 + GFF922 0.27 -1.0
235,521 - GFF922 0.42 -1.7
235,554 + GFF922 0.51 -0.7
235,562 + GFF922 0.53 +0.8
235,562 + GFF922 0.53 -2.4
235,562 + GFF922 0.53 -0.2
235,562 + GFF922 0.53 +0.2
235,563 - GFF922 0.53 -0.2
235,563 - GFF922 0.53 -1.0
235,798 + -1.2
235,799 - +0.6
235,799 - -1.9
235,851 + -0.5
235,852 - -1.5
235,852 - -1.0
235,860 + +0.6
235,860 + -0.6
235,861 - -0.7
235,861 - -0.2
235,861 - -0.1
235,861 - +1.8
235,861 - -1.1
236,254 + GFF923 0.85 -1.6
236,255 - GFF923 0.85 -0.1
236,255 - GFF923 0.85 -0.1
236,255 - GFF923 0.85 +0.4
236,255 - GFF923 0.85 -1.2
236,255 - GFF923 0.85 +0.2
236,255 - GFF923 0.85 -1.4
236,308 + -0.6
236,309 - +0.6
236,350 + +0.3
236,350 + +0.4
236,350 + -0.2
236,350 + -1.2
236,350 + +0.2
236,350 + +0.4
236,350 + -0.2
236,351 - -1.6
236,351 - -0.0
236,351 - -0.9
236,351 - -0.4
236,351 - -0.2
236,351 - +0.4
236,377 + +0.2
236,495 + GFF924 0.11 +0.4
236,495 + GFF924 0.11 -2.3
236,496 - GFF924 0.11 +0.7
236,654 + GFF924 0.30 -0.9
236,654 + GFF924 0.30 -1.3
236,655 - GFF924 0.31 -0.6
236,655 - GFF924 0.31 -1.3
236,655 - GFF924 0.31 -0.6
236,655 - GFF924 0.31 -0.4
236,655 - GFF924 0.31 -0.7
236,655 - GFF924 0.31 +0.2
236,655 - GFF924 0.31 +0.8
236,726 + GFF924 0.39 -0.2
236,727 - GFF924 0.40 +0.1
236,727 - GFF924 0.40 -0.9
236,727 - GFF924 0.40 -0.3
236,727 - GFF924 0.40 -0.2
236,727 - GFF924 0.40 +0.0
236,741 + GFF924 0.41 -0.7
236,741 + GFF924 0.41 -1.0
236,742 - GFF924 0.41 -0.0

Or see this region's nucleotide sequence