Experiment: M9 with Supernatant from Cyptococcus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF851 and GFF852 are separated by 223 nucleotides GFF852 and GFF853 are separated by 7 nucleotides GFF853 and GFF854 overlap by 4 nucleotides GFF854 and GFF855 are separated by 31 nucleotides
GFF851 - Two-component system sensor histidine kinase, at 159,573 to 160,619
GFF851
GFF852 - hypothetical protein, at 160,843 to 161,103
GFF852
GFF853 - hypothetical protein, at 161,111 to 162,307
GFF853
GFF854 - hypothetical protein, at 162,304 to 162,867
GFF854
GFF855 - Palmitoyl-CoA hydrolase( EC:3.1.2.2 ), at 162,899 to 163,588
GFF855
Position (kb) 161
162
163 Strain fitness (log2 ratio) -2
-1
0
1 at 160.295 kb on - strand, within GFF851 at 160.540 kb on + strand at 160.540 kb on + strand at 160.540 kb on + strand at 160.540 kb on + strand at 160.540 kb on + strand at 161.039 kb on - strand, within GFF852 at 161.203 kb on - strand at 161.308 kb on - strand, within GFF853 at 161.398 kb on - strand, within GFF853 at 161.398 kb on - strand, within GFF853 at 161.652 kb on + strand, within GFF853 at 161.761 kb on - strand, within GFF853 at 161.761 kb on - strand, within GFF853 at 161.827 kb on - strand, within GFF853 at 161.827 kb on - strand, within GFF853 at 161.827 kb on - strand, within GFF853 at 161.827 kb on - strand, within GFF853 at 161.827 kb on - strand, within GFF853 at 162.102 kb on + strand, within GFF853 at 162.389 kb on + strand, within GFF854 at 162.465 kb on - strand, within GFF854 at 162.621 kb on + strand, within GFF854 at 162.621 kb on + strand, within GFF854 at 162.791 kb on + strand, within GFF854 at 162.791 kb on + strand, within GFF854 at 162.883 kb on + strand at 162.883 kb on + strand at 162.883 kb on + strand at 162.884 kb on - strand at 163.254 kb on + strand, within GFF855 at 163.254 kb on + strand, within GFF855 at 163.255 kb on - strand, within GFF855
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Supernatant from Cyptococcus remove 160,295 - GFF851 0.69 +0.6 160,540 + +0.0 160,540 + -0.5 160,540 + -0.6 160,540 + -0.5 160,540 + -0.8 161,039 - GFF852 0.75 -1.1 161,203 - -0.2 161,308 - GFF853 0.16 -0.3 161,398 - GFF853 0.24 -0.1 161,398 - GFF853 0.24 +0.3 161,652 + GFF853 0.45 -2.0 161,761 - GFF853 0.54 -0.1 161,761 - GFF853 0.54 -0.7 161,827 - GFF853 0.60 -0.3 161,827 - GFF853 0.60 -0.2 161,827 - GFF853 0.60 -1.1 161,827 - GFF853 0.60 -0.2 161,827 - GFF853 0.60 +0.6 162,102 + GFF853 0.83 +0.3 162,389 + GFF854 0.15 -1.2 162,465 - GFF854 0.29 -0.9 162,621 + GFF854 0.56 -1.5 162,621 + GFF854 0.56 -0.5 162,791 + GFF854 0.86 -0.8 162,791 + GFF854 0.86 +0.8 162,883 + -0.4 162,883 + +0.8 162,883 + -0.3 162,884 - +0.1 163,254 + GFF855 0.51 -0.4 163,254 + GFF855 0.51 +0.1 163,255 - GFF855 0.52 -1.4
Or see this region's nucleotide sequence